DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000550 rno-miR-323 93646 Sec31a ucuccagcuggcacAUUACAc |||||| aaaauagauuucuuUAAUGUc 2 8 344 364 [rn4:14:10522587-10522607:+] 0.6164 120 6 -4.12 -0.1005 MIMAT0000574 rno-miR-140* 93646 Sec31a ggcaccaagaugggACACCAu |||||| ggauucugacaaaaUGUGGUu 2 8 264 284 [rn4:14:10522507-10522527:+] 0.6243 120 6 -15.45 -0.2508 MIMAT0000574 rno-miR-140* 93646 Sec31a ggcaccaagaugggACACCAu |||||| ggauucugacaaaaUGUGGUu 2 8 264 284 [rn4:14:10522507-10522527:+] 0.6243 120 6 -15.45 -0.2516 MIMAT0004705 rno-let-7b* 93646 Sec31a cccuuccgucauccaACAUAUc |||||| aauugcaucuggcugUGUAUAa 2 8 313 334 [rn4:14:10522556-10522577:+] 0.6164 120 6 -8.76 -0.2083 MIMAT0004705 rno-let-7b* 93646 Sec31a cccuuccgucauccaACAUAUc |||||| aauugcaucuggcugUGUAUAa 2 8 313 334 [rn4:14:10522556-10522577:+] 0.6164 120 6 -8.76 -0.1997 MIMAT0004713 rno-miR-25* 93646 Sec31a cguUAACGGGCACAGAGGCGGa || ||: | ||||||| gccAUGACCUCCGACUCCGCCa 2 20 8 29 [rn4:14:10522251-10522272:+] 0.5237 151 7 -20.62 -0.9108 MIMAT0004713 rno-miR-25* 93646 Sec31a cguUAACGGGCACAGAGGCGGa || ||: | ||||||| gccAUGACCUCCGACUCCGCCa 2 20 8 29 [rn4:14:10522251-10522272:+] 0.5237 151 7 -20.62 -0.3616 MIMAT0004732 rno-miR-135a* 93646 Sec31a aaAGUACCGAAGGUAGGGAUGu || | | :| ||||||| uuUCUUUAAUGUCUUCCCUACc 2 21 352 373 [rn4:14:10522595-10522616:+] 0.6164 148 7 -14.04 -1.1144 MIMAT0004732 rno-miR-135a* 93646 Sec31a aaAGUACCGAAGGUAGGGAUGu || | | :| ||||||| uuUCUUUAAUGUCUUCCCUACc 2 21 352 373 [rn4:14:10522595-10522616:+] 0.6164 148 7 -14.04 -1.1240 MIMAT0003174 rno-miR-540 93646 Sec31a ggucCUAGCUGGAGACUGga || || :|||||| uccuGAGGGA-UUCUGACaa 3 17 257 275 [rn4:14:10522500-10522518:+] 0.6243 126 0 -15.76 -0.1126 MIMAT0003174 rno-miR-540 93646 Sec31a ggucCUAGCUGGAGACUGga || || :|||||| uccuGAGGGA-UUCUGACaa 3 17 257 275 [rn4:14:10522500-10522518:+] 0.6243 126 0 -15.76 -0.1130 MIMAT0003177 rno-miR-541 93646 Sec31a ucacaCUGGUUGUAGUCUUAGGGaa ||::|| :|:: |||||| gaucaGAUUAAAGUUGUAAUCCC-- 3 21 385 407 [rn4:14:10522628-10522650:+] 0.6164 144 0 -13.90 -0.2145 MIMAT0005280 rno-miR-743b 93646 Sec31a agaUAAGUC--AUACCACAGAAAg |||| | || |||||||| cccAUUCUGCAAAUAGUGUCUUUc 2 20 211 234 [rn4:14:10522454-10522477:+] 0.6243 158 7 -15.05 -0.5419 MIMAT0005280 rno-miR-743b 93646 Sec31a agaUAAGUCAUACCACAGAAag |||: | | |||||| uagAUUU-CUUUAAUGUCUUcc 3 20 348 368 [rn4:14:10522591-10522611:+] 0.6164 125 0 -7.26 -0.1101 MIMAT0005280 rno-miR-743b 93646 Sec31a agauaagUCAUACCACA-GAAAg | | |||||| |||| uuuuaaaACUUUGGUGUACUUUu 2 16 284 306 [rn4:14:10522527-10522549:+] 0.6204 123 0 -11.48 -1.0702 MIMAT0005280 rno-miR-743b 93646 Sec31a agaUAAGUC--AUACCACAGAAAg |||| | || |||||||| cccAUUCUGCAAAUAGUGUCUUUc 2 20 211 234 [rn4:14:10522454-10522477:+] 0.6243 158 7 -15.05 -0.5431 MIMAT0005280 rno-miR-743b 93646 Sec31a agaUAAGUCAUACCACAGAAag |||: | | |||||| uagAUUU-CUUUAAUGUCUUcc 3 20 348 368 [rn4:14:10522591-10522611:+] 0.6164 125 0 -7.26 -0.1074 MIMAT0005280 rno-miR-743b 93646 Sec31a agauaagUCAUACCACA-GAAAg | | |||||| |||| uuuuaaaACUUUGGUGUACUUUu 2 16 284 306 [rn4:14:10522527-10522549:+] 0.6204 123 0 -11.48 -1.0710 MIMAT0005283 rno-miR-872* 93646 Sec31a uccuccgAUGACG-UUAUCA-AGu | |||| |||||| || uuucccaUUCUGCAAAUAGUGUCu 2 16 208 231 [rn4:14:10522451-10522474:+] 0.6243 122 0 -11.22 -0.9573 MIMAT0005283 rno-miR-872* 93646 Sec31a uccuccgAUGACG-UUAUCA-AGu | |||| |||||| || uuucccaUUCUGCAAAUAGUGUCu 2 16 208 231 [rn4:14:10522451-10522474:+] 0.6243 122 0 -11.22 -0.9584 MIMAT0005328 rno-miR-673 93646 Sec31a gagguuCCUGGCCUCGACACuc | |:| | |||||| aaaauuGCAUCUG-GCUGUGua 3 17 311 331 [rn4:14:10522554-10522574:+] 0.6164 126 0 -13.62 -0.1570 MIMAT0005328 rno-miR-673 93646 Sec31a gagguuCCUGGCCUCGACACuc | |:| | |||||| aaaauuGCAUCUG-GCUGUGua 3 17 311 331 [rn4:14:10522554-10522574:+] 0.6164 126 0 -13.62 -0.1563 MIMAT0005336 rno-miR-760-5p 93646 Sec31a gcccgAGACCACCGGACUCCCc | |||| |||||||| cauagUGUGGUUUCCUGAGGGa 2 18 245 266 [rn4:14:10522488-10522509:+] 0.6243 161 7 -23.06 -0.8512 MIMAT0005336 rno-miR-760-5p 93646 Sec31a gcccgAGACCACCGGACUCCCc | |||| |||||||| cauagUGUGGUUUCCUGAGGGa 2 18 245 266 [rn4:14:10522488-10522509:+] 0.6243 161 7 -23.06 -0.8524 MIMAT0012826 rno-miR-220 93646 Sec31a ucCAGAGACUG--UGACACCAcc | :|||||| | |||||| ggGAUUCUGACAAAAUGUGGUuu 3 20 263 285 [rn4:14:10522506-10522528:+] 0.6243 142 0 -24.90 -0.2128 MIMAT0012826 rno-miR-220 93646 Sec31a ucCAGAGACUG--UGACACCAcc | :|||||| | |||||| ggGAUUCUGACAAAAUGUGGUuu 3 20 263 285 [rn4:14:10522506-10522528:+] 0.6243 142 0 -24.90 -0.2134 MIMAT0012837 rno-miR-632 93646 Sec31a aggcCGUCCUUUGUCUGug |:| |||||||| cuguGUAUAAAACAGACcu 3 16 325 343 [rn4:14:10522568-10522586:+] 0.6164 135 0 -14.98 -0.1900 MIMAT0012837 rno-miR-632 93646 Sec31a aggcCGUCCUUUGUCUGug |:| |||||||| cuguGUAUAAAACAGACcu 3 16 325 343 [rn4:14:10522568-10522586:+] 0.6164 135 0 -14.98 -0.1784 MIMAT0012844 rno-miR-665 93646 Sec31a ucccuggagucGGAGGACCa ::|||||| caaauagugucUUUCCUGGa 2 10 220 239 [rn4:14:10522463-10522482:+] 0.6243 125 6 -13.09 -0.1539 MIMAT0012844 rno-miR-665 93646 Sec31a ucccuggagucGGAGGACCa ::|||||| caaauagugucUUUCCUGGa 2 10 220 239 [rn4:14:10522463-10522482:+] 0.6243 125 6 -13.09 -0.1545 MIMAT0000606 rno-miR-7a 93646 Sec31a ugUUGUUU-UAGUGAU--CAGAAGGu ||:|:| || :|| ||||||| aaAAUAGAUUUCUUUAAUGUCUUCCc 2 22 344 369 [rn4:14:10522587-10522612:+] 0.6164 155 7 -13.60 -1.2158 MIMAT0000606 rno-miR-7a 93646 Sec31a ugUUGUUU-UAGUGAU--CAGAAGGu ||:|:| || :|| ||||||| aaAAUAGAUUUCUUUAAUGUCUUCCc 2 22 344 369 [rn4:14:10522587-10522612:+] 0.6164 155 7 -13.60 -1.2196 MIMAT0000611 rno-miR-135b 93646 Sec31a aguguauccUUACUUUUCGGUAu || | |||||||| cacuucuccAAAG-AAAGCCAUg 2 15 28 49 [rn4:14:10522271-10522292:+] 0.5740 148 7 -13.70 -0.3040 MIMAT0000611 rno-miR-135b 93646 Sec31a aguguauccUUACUUUUCGGUAu || | |||||||| cacuucuccAAAG-AAAGCCAUg 2 15 28 49 [rn4:14:10522271-10522292:+] 0.5740 148 7 -13.70 -0.3048 MIMAT0000780 rno-miR-7b 93646 Sec31a ugUUGUUUUA--GUGUU-CAGAAGGu ||:|:| | : :|| ||||||| aaAAUAGAUUUCUUUAAUGUCUUCCc 2 22 344 369 [rn4:14:10522587-10522612:+] 0.6164 151 7 -14.83 -1.2158 MIMAT0000780 rno-miR-7b 93646 Sec31a ugUUGUUUUA--GUGUU-CAGAAGGu ||:|:| | : :|| ||||||| aaAAUAGAUUUCUUUAAUGUCUUCCc 2 22 344 369 [rn4:14:10522587-10522612:+] 0.6164 151 7 -14.83 -1.2196 MIMAT0000792 rno-miR-23a 93646 Sec31a ccUUUAGGGACCG--UUACACUa ::|| :||| | ||||||: agGGAU-UCUGACAAAAUGUGGu 2 20 262 283 [rn4:14:10522505-10522526:+] 0.6243 132 0 -17.44 -0.1527 MIMAT0000792 rno-miR-23a 93646 Sec31a ccUUUAGGGACCG--UUACACUa ::|| :||| | ||||||: agGGAU-UCUGACAAAAUGUGGu 2 20 262 283 [rn4:14:10522505-10522526:+] 0.6243 132 0 -17.44 -0.1532 MIMAT0000793 rno-miR-23b 93646 Sec31a ccaUUAGGGACCG--UUACACUa :|| :||| | ||||||: aggGAU-UCUGACAAAAUGUGGu 2 19 262 283 [rn4:14:10522505-10522526:+] 0.6243 131 0 -16.07 -0.1527 MIMAT0000793 rno-miR-23b 93646 Sec31a ccaUUAGGGACCG--UUACACUa :|| :||| | ||||||: aggGAU-UCUGACAAAAUGUGGu 2 19 262 283 [rn4:14:10522505-10522526:+] 0.6243 131 0 -16.07 -0.1532 MIMAT0000841 rno-miR-135a 93646 Sec31a aguguauccuUAUUUUUCGGUAu | |:|||||||| ccacuucuccAAAGAAAGCCAUg 2 14 27 49 [rn4:14:10522270-10522292:+] 0.5740 153 7 -16.19 -0.3040 MIMAT0000841 rno-miR-135a 93646 Sec31a aguguauccuUAUUUUUCGGUAu | |:|||||||| ccacuucuccAAAGAAAGCCAUg 2 14 27 49 [rn4:14:10522270-10522292:+] 0.5740 153 7 -16.19 -0.3048 MIMAT0000863 rno-miR-186 93646 Sec31a ucGGGUUUUCCUCUUAAGAAAc ||:|||| ||| |||||| gaCCUAAAA-UAGAUUUCUUUa 2 21 339 359 [rn4:14:10522582-10522602:+] 0.6164 142 6 -13.49 -0.2953 MIMAT0000863 rno-miR-186 93646 Sec31a ucGGGUUUUCCUCUUAAGAAAc ||:|||| ||| |||||| gaCCUAAAA-UAGAUUUCUUUa 2 21 339 359 [rn4:14:10522582-10522602:+] 0.6164 142 6 -13.49 -0.2849 MIMAT0001626 rno-miR-431 93646 Sec31a acgUACUGCCGG-ACG-UUCUGu | || ||| ||| ||||| ccaAAGAAAGCCAUGCUAAGACu 2 19 35 57 [rn4:14:10522278-10522300:+] 0.5740 121 0 -15.80 -0.1350 MIMAT0001626 rno-miR-431 93646 Sec31a acgUACUGCCGG-ACG-UUCUGu | || ||| ||| ||||| ccaAAGAAAGCCAUGCUAAGACu 2 19 35 57 [rn4:14:10522278-10522300:+] 0.5740 121 0 -15.80 -0.1354 MIMAT0003119 rno-miR-224 93646 Sec31a auuugccUUGGUGAUCAC-UGAAc || | :|:||| |||| guuuuuaAAACUUUGGUGUACUUu 2 17 282 305 [rn4:14:10522525-10522548:+] 0.6204 120 0 -10.36 -1.0446 MIMAT0003119 rno-miR-224 93646 Sec31a auuugccUUGGUGAUCAC-UGAAc || | :|:||| |||| guuuuuaAAACUUUGGUGUACUUu 2 17 282 305 [rn4:14:10522525-10522548:+] 0.6204 120 0 -10.36 -1.0455 MIMAT0003176 rno-miR-539 93646 Sec31a ugUGUGGUUCCUAU-UAAAGAGg | ||| | ||| ||||||: acAGACCUAAAAUAGAUUUCUUu 2 21 336 358 [rn4:14:10522579-10522601:+] 0.6164 143 0 -13.25 -0.1058 MIMAT0003176 rno-miR-539 93646 Sec31a ugUGUGGUUCCUAU-UAAAGAGg | ||| | ||| ||||||: acAGACCUAAAAUAGAUUUCUUu 2 21 336 358 [rn4:14:10522579-10522601:+] 0.6164 143 0 -13.25 -0.1054 MIMAT0003193 rno-miR-494 93646 Sec31a uccaaAGGGCACAUACAAAGu || : | ||||||| gccccUCAUUAGCAUGUUUCc 2 17 65 85 [rn4:14:10522308-10522328:+] 0.6243 144 7 -8.78 -0.1288 MIMAT0003193 rno-miR-494 93646 Sec31a uccaaAGGGCACAUACAAAGu || : | ||||||| gccccUCAUUAGCAUGUUUCc 2 17 65 85 [rn4:14:10522308-10522328:+] 0.6243 144 7 -8.78 -0.1292 MIMAT0005310 rno-miR-384-3p 93646 Sec31a uaaCACUUGUUAAAGAUCCUUa ||| || |||:|||||| uugGUGUAC--UUUUUAGGAAa 2 20 294 313 [rn4:14:10522537-10522556:+] 0.6164 148 6 -13.92 -0.2056 MIMAT0005310 rno-miR-384-3p 93646 Sec31a uaaCACUUGUUAAAGAUCCUUa ||| || |||:|||||| uugGUGUAC--UUUUUAGGAAa 2 20 294 313 [rn4:14:10522537-10522556:+] 0.6164 148 6 -13.92 -0.2063

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G097865 Sec31a Rattus norvegicus 93646

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Sec31a; Sec31l1; rCG_37919 rno-miR-125a 244 268 -GUGUC-CAAUUUCCCAGAG---UCCCU- ||:|| || |||:|| ||||| ACAUAGUGU-----GGUUUCCUGAGGGAU Sec31a; Sec31l1; rCG_37919 rno-miR-125b 242 268 AGUGU-UCAAUCCCAGAG---UCCCU- |||| ||| |||:|| ||||| ACACAUAGUGU-GGUUUCCUGAGGGAU Sec31a; Sec31l1; rCG_37919 rno-miR-127 42 65 -UCGGUUCGAGUCUG-CCUAGGCU ||||| ||| |||| ||: || AAGCCAUGCUAAGACUGGGACCA- Sec31a; Sec31l1; rCG_37919 rno-miR-130a 296 325 -UACG-GGAAAAUUG---UAACGU-GAC- :||: |:|||||: |||||| ||| GGUGUACUUUUUAGGAAAAUUGCAUCUGG Sec31a; Sec31l1; rCG_37919 rno-miR-130b 296 325 -UACG-GGAAAGUAG---UAACGU-GAC- :||: |:|||:| |||||| ||| GGUGUACUUUUUAGGAAAAUUGCAUCUGG Sec31a; Sec31l1; rCG_37919 rno-miR-132 43 60 GCUGGUACCGACAUCUGACAAU :||||| || |||||| -AGCCAUG-CUA-AGACUGG-- Sec31a; Sec31l1; rCG_37919 rno-miR-133a 45 67 UGU-CGACCAACUUCCCCUGGUU- || ||| || |||||||: CCAUGCUAA--GACUGGGACCAGC Sec31a; Sec31l1; rCG_37919 rno-miR-133b 48 67 AUCGACCAACUUCCCCUGGUU- ||| || |||||||: -UGCUAA--GACUGGGACCAGC Sec31a; Sec31l1; rCG_37919 rno-miR-135a 27 51 AGUGUAUCCUUAUUUUUCGGUAU- ||| |:||||||||: CCACUUCUCCAAAGAAAGCCAUGC Sec31a; Sec31l1; rCG_37919 rno-miR-135b 27 51 -GUGUAUCCUUACUUUUCGGUAU- ||| :||||||||: CCACUUCUCCAAAGAAAGCCAUGC Sec31a; Sec31l1; rCG_37919 rno-miR-140* 249 266 ACAGGCACCAAGAUGGGACACCAU :|||||| :|||| || ---GUGUGGUU---UCCUGAGGG- Sec31a; Sec31l1; rCG_37919 rno-miR-151* 47 73 -AUGA-UCUGACAC---UCGAGGAGCU |:|| |||||| ||| |||| AUGCUAAGACUGGGACCAGCCCCUCA- Sec31a; Sec31l1; rCG_37919 rno-miR-20b* 101 126 -GUCUUCACGAGUGUG-----ACGUCA |||:| |||: || ||||| CCAGGA--GCUUUGACAUUUCUGCAGG Sec31a; Sec31l1; rCG_37919 rno-miR-212 48 64 CCGGCACUGACCUCUGACAAU ||: |||||| ||| UGCUAAGACUGG-GACC---- Sec31a; Sec31l1; rCG_37919 rno-miR-24 44 66 GACAAGG-ACGAC-UUGACUC-GGU- || |||| :||||:| ||| ----GCCAUGCUAAGACUGGGACCAG Sec31a; Sec31l1; rCG_37919 rno-miR-28 52 72 GAGUUAUCUGACAC---UCGAGGAA |||||| ||| ||| -----AAGACUGGGACCAGCCCCUC Sec31a; Sec31l1; rCG_37919 rno-miR-291-5p 260 301 UCUCUC---------------CCGGAGG---UGAAACUAC |||:| ||::|:: ||||||:|| UGAGGGAUUCUGACAAAAUGUGGUUUUUAAAACUUUGGUGU Sec31a; Sec31l1; rCG_37919 rno-miR-320 151 178 AAGCGGGAGAGU----UGGGU-CGAAAA | ||||| || :|||: ||||| -CCCCCCUCCCACCCCGCCCGUGCUUUC Sec31a; Sec31l1; rCG_37919 rno-miR-324-5p 241 283 -UGUG-GUUACG-----GGAUCCCCU-----------ACGC |||| :|:||: |||: |||| ||:| UACACAUAGUGUGGUUUCCUGAGGGAUUCUGACAAAAUGUGG Sec31a; Sec31l1; rCG_37919 rno-miR-327 60 74 -UGGGAGUACGGGGAGUUCC ||| |||||||| GACCA----GCCCCUCAU-- Sec31a; Sec31l1; rCG_37919 rno-miR-330 115 148 -AGAGACGUCCG-------GGAC----ACGAAACG |:||||||||| ||| ||||| AUUUCUGCAGGCAAACUCCCCUAGAACUGCUUG-- Sec31a; Sec31l1; rCG_37919 rno-miR-347 249 269 -AC-CCGCUGGGUCUCCCUGU || ||: :|| ||||||: GUGUGGUU-UCCUGAGGGAUU Sec31a; Sec31l1; rCG_37919 rno-miR-351 248 268 GUCCGAGUUUCCCGAGGAGUCCCU- |: || |||| ||||| --AGUGU---GGUUUCCUGAGGGAU Sec31a; Sec31l1; rCG_37919 rno-miR-361 255 274 CAUGGGGAC-CUCUAAGACUAUU ::|||| |:|||||||| --UUUCCUGAGGGAUUCUGAC-- Sec31a; Sec31l1; rCG_37919 rno-miR-363-5p 78 98 UUUAACGUAGC-ACUAGGUGGGC- ||: || ||: ||||||| ---AUGUUUCCAUGG-CCACCCGC Sec31a; Sec31l1; rCG_37919 rno-miR-370 100 128 UUGGUCCAAG-----GUGGGGUCGUCCG- ||||| ||:::| |||||| -CCCAGGAGCUUUGACAUUUCUGCAGGCA Sec31a; Sec31l1; rCG_37919 rno-miR-485 55 72 CUUAAGUAGUGCC-GGUCGGAGA- | || |||||| || -------ACUGGGACCAGCCCCUC Sec31a; Sec31l1; rCG_37919 rno-miR-539 95 124 -UGUGUGGUUCCUAU------UAAAGAGG- :| |||| |||| |||||| | CGC-CACCCAGGAGCUUUGACAUUUCUGCA Sec31a; Sec31l1; rCG_37919 rno-miR-7b 345 370 -UUGUUUU----AGUGUUCAGAAGGU ||:|:| |:| ||||||| AAAUAGAUUUCUUUAAU-GUCUUCCC Sec31a; Sec31l1; rCG_37919 rno-miR-125a 243 266 GUGUCCAAUUUC-CCA---GAGUCCCU |||| ||: | ||| || ||||| CACA---TAGTGTGGTTTCCTGAGGGA Sec31a; Sec31l1; rCG_37919 rno-miR-127 43 66 UCGGUUCGAGUCUG--CCUAGGCu ||||| ||| |||| ||| | | AGCCATGCTAAGACTGGGACCAGc Sec31a; Sec31l1; rCG_37919 rno-miR-130a 297 323 uACGGGAAAA----UUGUAACGU-GAC ||: ||||| || |||||| ||| gTGTACTTTTTAGGAAAATTGCATCTG Sec31a; Sec31l1; rCG_37919 rno-miR-130b 297 323 uACGGGAAAG----UAGUAACGU-GAC ||: ||||: | |||||| ||| gTGTACTTTTTAGGAAAATTGCATCTG Sec31a; Sec31l1; rCG_37919 rno-miR-132 42 61 gcuGGUACCGACAUCUGACaau |||| ||| |||||| aagCCAT-GCT-AAGACTGgga Sec31a; Sec31l1; rCG_37919 rno-miR-133a 41 65 UGUCG--ACCA-ACUUCCCCUGGUu | ||| || | || ||||||| AAAGCCATGCTAAGACTGGGACCAg Sec31a; Sec31l1; rCG_37919 rno-miR-133b 42 65 aUCG--ACCA-ACUUCCCCUGGUu ||| || | || ||||||| aAGCCATGCTAAGACTGGGACCAg Sec31a; Sec31l1; rCG_37919 rno-miR-135a 27 49 aGUGUAUCCUUAUUUUUCGGUAu ||| | | |:|||||||| cCACTTCTCCAAAGAAAGCCATg Sec31a; Sec31l1; rCG_37919 rno-miR-140* 255 284 ACAGG-CACC--AAGAUGG---GACACCAu | ||| | || ||||: | |||||| TTTCCTGAGGGATTCTGACAAAATGTGGTt Sec31a; Sec31l1; rCG_37919 rno-miR-140* 227 256 ACAG---GCACCAAGAUG-G---GACACCAu |||| | ||| | ||| | |||||| TGTCTTTCCTGGAT-TACACATAGTGTGGTt Sec31a; Sec31l1; rCG_37919 rno-miR-151* 48 73 AUGA-UCUGACAC---UCGAGGAGcu |:|| |||||| | ||| |||| TGCTAAGACTGGGACCAGCCCCTCat Sec31a; Sec31l1; rCG_37919 rno-miR-20b* 102 125 GUCUUCACGAGUG---UGACGUCa |||:|| :| || |||||| CAGGAGCTTTGACATTTCTGCAGg Sec31a; Sec31l1; rCG_37919 rno-miR-212 43 61 cCGGCACUGACCUCUGACaau ||| || || |||||| aGCCATG-CT-AAGACTGgga Sec31a; Sec31l1; rCG_37919 rno-miR-24 40 64 gacaaGG-ACGACU-UGACUC-GGU || |||| | ||||:| ||| gaaagCCATGCTAAGACTGGGACCA Sec31a; Sec31l1; rCG_37919 rno-miR-28 47 71 gaguuaUCUGACAC---UCGAGGAa |||||| | ||| ||| atgctaAGACTGGGACCAGCCCCTc Sec31a; Sec31l1; rCG_37919 rno-miR-291-5p 275 299 ucucucCCGGAGG---UGAAACUAC ||::|:: ||||||:|| aaatgtGGTTTTTAAAACTTTGGTG Sec31a; Sec31l1; rCG_37919 rno-miR-320 154 177 aaGCGGGAGAGUUGGGU-CGAAAa | ||| | | :|||: ||||| ccCTCCCACCCCGCCCGTGCTTTc Sec31a; Sec31l1; rCG_37919 rno-miR-324-5p 242 270 UGUG-GUUAC-----GGGAUCCCCUACGc |||| :|:|| :|||: ||||| | ACACATAGTGTGGTTTCCTGAGGGATTCt Sec31a; Sec31l1; rCG_37919 rno-miR-327 58 75 ugggaGUACGGGGAGUucc || |||||||| gggacCA-GCCCCTCAtta Sec31a; Sec31l1; rCG_37919 rno-miR-330 116 149 AGAGACGUCC-------GGGA-C---ACGAAacg |:|||||||| |||| | ||||| TTTCTGCAGGCAAACTCCCCTAGAACTGCTTgaa Sec31a; Sec31l1; rCG_37919 rno-miR-346 103 131 UCUCCG--UCCGU---GA-GUCCGUCUGu ||: || | || || |||||| || AGGAGCTTTGACATTTCTGCAGGCAAACt Sec31a; Sec31l1; rCG_37919 rno-miR-347 248 268 aCCCGCU--GGGUCUCCCUgu | |:|: :|| |||||| aGTGTGGTTTCCTGAGGGAtt Sec31a; Sec31l1; rCG_37919 rno-miR-351 235 266 GUCC----GAGUUUC---CC-GAGGAGUCCCU | || | || || || :|||| ||||| CTGGATTACACATAGTGTGGTTTCCTGAGGGA Sec31a; Sec31l1; rCG_37919 rno-miR-361 254 275 CAUGGGGAC-CUCUAAGACUAUU || ::|||| |:|||||||| || GT-TTCCTGAGGGATTCTGACAA Sec31a; Sec31l1; rCG_37919 rno-miR-363-5p 79 96 uuuAACGUAGCACUAGGUGGGC || ||| | ||||||| tgtTTCCATGG----CCACCCG Sec31a; Sec31l1; rCG_37919 rno-miR-370 99 126 UUGGUCC---AAG--GUGGGGUCGUCCG | ||||| ||: ||:::| |||||| ACCCAGGAGCTTTGACATTTCTGCAGGC Sec31a; Sec31l1; rCG_37919 rno-miR-485 45 70 cuUAAG-UAGUG--CC-GGUCGGAGA || | | || || |||||| || ccATGCTAAGACTGGGACCAGCCCCT Sec31a; Sec31l1; rCG_37919 rno-miR-133a 58 65 U----------------------GU-CGACCAACUUCCCCUGGUU || ||| || |||||||: UCCGCCACUUCUCCAAAGAAAGCCAUGCUAA--GACUGGGACCAGC Sec31a; Sec31l1; rCG_37919 rno-miR-133b 58 65 AU------------------------CGACCAACUUCCCCUGGUU ||| || |||||||: UCCGCCACUUCUCCAAAGAAAGCCAUGCUAA--GACUGGGACCAGC Sec31a; Sec31l1; rCG_37919 rno-miR-135a 42 49 A--------------------GUGUAUCCUUAUUUUUCGGUAU ||| |:||||||||: UGCCAUGACCUCCGACUCCGCCACUUCUCCAAAGAAAGCCAUGC Sec31a; Sec31l1; rCG_37919 rno-miR-135b 42 49 ---------------------GUGUAUCCUUACUUUUCGGUAU ||| :||||||||: UGCCAUGACCUCCGACUCCGCCACUUCUCCAAAGAAAGCCAUGC Sec31a; Sec31l1; rCG_37919 rno-miR-7b 362 369 -------------------UUGUUUU-AGU-GUU-CAGAAGGU ||:|:| || :|| ||||||| GUGUAUAAAACAGACCUAAAAUAGAUUUCUUUAAUGUCUUCCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sec31a RAID01293339 rno-miR-23a-3p miRNA MIMAT0000792 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID01336613 rno-miR-511-3p miRNA MIMAT0017358 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID01649220 rno-miR-7b miRNA MIMAT0000780 Sec31a mRNA 93646 Prediction 0.2202 Sec31a RAID01687466 rno-miR-431 miRNA MIMAT0001626 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID01892740 rno-miR-186-5p miRNA MIMAT0000863 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID01958525 rno-miR-494-3p miRNA MIMAT0003193 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID02015048 rno-miR-3561-3p miRNA MIMAT0017831 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID02162789 rno-miR-135a-3p miRNA MIMAT0004732 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID02494749 rno-miR-9a-5p miRNA MIMAT0000781 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID02540363 rno-miR-135a-5p miRNA MIMAT0000841 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID02610326 rno-miR-384-3p miRNA MIMAT0005310 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID03058327 rno-miR-539-5p miRNA MIMAT0003176 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID03385134 rno-miR-135b-5p miRNA MIMAT0000611 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID03597131 rno-miR-23b-3p miRNA MIMAT0000793 Sec31a mRNA 93646 Prediction 0.1828 Sec31a RAID03644709 rno-miR-7a-5p miRNA MIMAT0000606 Sec31a mRNA 93646 Prediction 0.2202 Sec31a RAID03889288 rno-miR-224-5p miRNA MIMAT0003119 Sec31a mRNA 93646 Prediction 0.1828