DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000561 rno-miR-327 29545 Uchl1 ugggaguacgGGGAGUUCc :||||||| guuugucuagUCCUCAAGa 2 10 263 281 [rn4:14:44114417-44114435:-] 0.5847 141 7 -13.68 -1.0644 MIMAT0004708 rno-miR-9* 29545 Uchl1 ugaaAGCCAAUAGAUCGAAAUa |:|||| | ||||||| gcccUUGGUU-UGCAGCUUUAg 2 19 55 75 [rn4:14:44114623-44114643:-] 0.5847 156 7 -13.89 -0.1031 MIMAT0003209 rno-miR-363* 29545 Uchl1 uuUAACGUAGCA--CUAGGUGGGc | ||| ||| ||||||| cuACUGCCCCGUCCCCUCCACCCc 2 21 107 130 [rn4:14:44114568-44114591:-] 0.5847 147 7 -18.83 -0.1371 MIMAT0012825 rno-miR-105 29545 Uchl1 uggugucUGUAG-ACUCGUGAAc :|| | | ||||||| uugguuuGCAGCUUUAGCACUUa 2 16 59 81 [rn4:14:44114617-44114639:-] 0.5847 146 7 -11.85 -0.9767 MIMAT0012827 rno-miR-1224 29545 Uchl1 gaggUGGAGGGGUCAGGAGUg :::| :|:|||||||| ugugGUUUGUCUAGUCCUCAa 2 18 259 279 [rn4:14:44114419-44114439:-] 0.5847 157 7 -22.36 -1.0058 MIMAT0000581 rno-miR-338 29545 Uchl1 agUUGUUUUAGUGACUACGACCu ||:|||| | :| |||||| agAAUAAAA-CUUUUCUGCUGGc 2 22 285 306 [rn4:14:44114392-44114413:-] 0.5847 135 6 -13.21 -0.1946 MIMAT0000837 rno-miR-130b 29545 Uchl1 uacggGAAAGUAGUAA-CGUGAc :|| || | || ||||| cuuggUUUGCAGCUUUAGCACUu 2 18 58 80 [rn4:14:44114618-44114640:-] 0.5847 121 0 -8.86 -0.7377 MIMAT0000895 rno-miR-291a-3p 29545 Uchl1 ccguguguuucaccuUCGUGAAa ||||||| uugguuugcagcuuuAGCACUUa 2 9 59 81 [rn4:14:44114617-44114639:-] 0.5847 140 7 -13.95 -0.9767 MIMAT0000896 rno-miR-292-5p 29545 Uchl1 guuuucuCGGGGGUCAAAC-UCa ||||:::||||| || cugccccGCCCUUGGUUUGCAGc 2 16 48 70 [rn4:14:44114628-44114650:-] 0.5847 127 0 -18.47 -0.1898 MIMAT0000903 rno-miR-320 29545 Uchl1 agCGGGAGAGUUGGGUCGAAAa |||||: : ||||||| ccGCCCUUGGUUUGCAGCUUUa 2 21 53 74 [rn4:14:44114624-44114645:-] 0.5847 152 7 -23.39 -0.3998

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G013524 Uchl1 Rattus norvegicus 29545

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Uchl1 rno-let-7a 89 119 -UUGAUA------UGUUGGAUGAUGGAGU- |:||:| :|: :|||||:|| |: CAGCUGUCUUCUUGCGUUCUACUGCCCCGU Uchl1 rno-let-7b 83 119 -UUGGUG------------UGUUGGAUGAUGGAGU- |||||| :|: :|||||:|| |: CAACCACAGCUGUCUUCUUGCGUUCUACUGCCCCGU Uchl1 rno-let-7c 83 119 -UUGGU------------AUGUUGGAUGAUGGAGU- ||||| |:|: :|||||:|| |: CAACCACAGCUGUCUUCUUGCGUUCUACUGCCCCGU Uchl1 rno-let-7d 90 118 -UGAU------ACGUUGGAUGAUGGAGA :||: |||: :|||||:|| | AGCUGUCUUCUUGCGUUCUACUGCCCCG Uchl1 rno-let-7f 89 119 -UUGAUA------UGUUAGAUGAUGGAGU- |:||:| :|: ||||||:|| |: CAGCUGUCUUCUUGCGUUCUACUGCCCCGU Uchl1 rno-miR-103 27 53 AGUAUCGGGACAUGUUA-----CGACGA ||| ||||| :||: ||||| CCAU--CCCUGGGCAGGCGCGCGCUGCC Uchl1 rno-miR-106b 61 82 -UAGACGU-GACAGUCGUGAAAU :|:|||| || |:||||||| GGUUUGCAGCU-UUAGCACUUA- Uchl1 rno-miR-128a 134 158 UUUUCUCUGG----CCAA-GUGACACU- ||:|| || | |||||| ----CAGGCCACCAGGGAGCUCUGUGAC Uchl1 rno-miR-128b 134 158 CUUUCUCUGG----CCAA-GUGACACU- ||:|| || | |||||| ----CAGGCCACCAGGGAGCUCUGUGAC Uchl1 rno-miR-130a 54 81 UACGGGAAAAU--UGUAA----CGUGAC |||||| :|| ||||| -CGCCCUUGGUUUGCAGCUUUAGCACUU Uchl1 rno-miR-130b 54 81 UACGGGAAA-----GUAGUAA-CGUGAC |||||| || || ||||| -CGCCCUUGGUUUGCAGCUUUAGCACUU Uchl1 rno-miR-140* 225 266 ACAGGC--ACCAA-GA----------UGGG----ACACCAU |||: ||||| || :||: |||||| GGUCUCUUUGGUUUCUGUAAGUUACGGCCUUGGAUGUGGUU Uchl1 rno-miR-151 226 275 -GGAGUU-CC--------------UCGGAGU--------- CAGAUCA :||| || :||||:: ||||||| GUCUCUUUGGUUUCUGUAAGUUACGGCCUUGGAUGUGGUUUGUCUAGUC Uchl1 rno-miR-152 25 52 -GGGUUCAAGACA-GUA----CGUGACU |||| ||| || ||:||| CCCCAUCC-CUGGGCAGGCGCGCGCUGC Uchl1 rno-miR-17 46 82 -UGAUGG------------ACGU-GACAUUCGUGAAAC :||:|| |||| || ||||||| CGCUGCCCCGCCCUUGGUUUGCAGCUUU-AGCACUUA- Uchl1 rno-miR-184 84 122 -UGGGA---AUAGU------CAAGA------GGCAGGU ||| |:|| ||||| |||||| AACCACAGCUGUCUUCUUGCGUUCUACUGCCCCGUCCC Uchl1 rno-miR-194 137 160 AGGUGUA-CCUCAACGACAAUGU- |||| |||| |||| ||| GCCACCAGGGAGCU-CUGUGACAG Uchl1 rno-miR-20a 47 82 -GAUGG------------ACGU-GAUAUUCGUGAAAU ||:|| |||| || ||||||| GCUGCCCCGCCCUUGGUUUGCAGCUUU-AGCACUUA- Uchl1 rno-miR-217 237 266 UAGG---UCAGUCAAGGA--CUACGUCAU ||: |||:| ||| ||||::|| UUCUGUAAGUUACGGCCUUGGAUGUGGUU Uchl1 rno-miR-22 165 192 UGUCAA----GAAGUUGACCG--UCGAA |||| |||||: ||| |||| CCAGUGUGAACUUCAGA-GGCUAAGCUC Uchl1 rno-miR-224 144 159 AUUUGCCUUGGUGAUCACUGAAC |||:|: || ||||| ----GGGAGCU-CU-GUGACA-- Uchl1 rno-miR-28 176 195 GAGUUAUCUGACACUCGAGGAA |||: ||:|| |||||:| UUCAG-AGGCUA--AGCUCUUA Uchl1 rno-miR-290 48 71 UUUUUCACGGGG-GU--AUCAAAC-UC- |||||| | |:||||| || -----CUGCCCCGCCCUUGGUUUGCAGC Uchl1 rno-miR-291-3p 39 82 -CCGUGUGUUUC---------ACCU----------UCGUGAAA |||:|:|: | ||| ||||||| AGGCGCGCGCUGCCCCGCCCUUGGUUUGCAGCUUUAGCACUUA Uchl1 rno-miR-292-3p 19 46 UGUGAGUUUU---GGACCG--CCGUGAA |:||| ||||| |||:| CCGCUCCCCCAUCCCUGGGCAGGCGCG- Uchl1 rno-miR-298 281 305 -CCUUCUUGUCGGGAGGAGACGG- |||||||:| ||::|||||: AGGAAGAAUAAAACUUUUCUGCUG Uchl1 rno-miR-31 88 116 -GUCGAUACGGU---CGU-AGA--ACGGA |||||:| |: ||: ||| |||| ACAGCUGU-CUUCUUGCGUUCUACUGCCC Uchl1 rno-miR-320 53 75 AAGCGGGAGAGUUGGGUCGAAAA ||||||: : ||||||| -CCGCCCUUGGUUUGCAGCUUUA Uchl1 rno-miR-324-3p 14 42 -GGUCGUCGU--------GGACCCCGUCACC ||||| || ||| |||||| ACCAGCCGCUCCCCCAUCCCU-GGGCAGG-- Uchl1 rno-miR-324-5p 129 157 UGUGGUUACGGGAUCCCCU----ACGC- |||| ||| |||| ||:| CCACCCAGGCCACCAGGGAGCUCUGUGA Uchl1 rno-miR-328 2 20 UGCCUUCCCGUCUCUCCCGGUC- |||| |||||| |||| ----UAGGG-AGAGAGAACCAGC Uchl1 rno-miR-330 235 270 -AGAGACGU------CCGGG----ACACGAAACG- |:||||:| ||||: |||| ||||: GUUUCUGUAAGUUACGGCCUUGGAUGUGGUUUGUC Uchl1 rno-miR-331 134 151 AAGAUCCUAUCCG--GGUCCC-CG- |||| |||||| || --------CAGGCCACCAGGGAGCU Uchl1 rno-miR-333 152 169 UUUUCAUUGAUCG-UGUGGUG ||:|| ||| |||||| ---UGUGAC-AGCCACACCAG Uchl1 rno-miR-339 20 43 ACUCGAGGACCU-----CCUGUCCCU ||||| ||:|||| --CGCUCCCCCAUCCCUGGGCAGGC- Uchl1 rno-miR-346 8 45 -UCUCC--GUCCGUGAG----------UCCGUCUGU- |||| ||| |:||| :|||||:|: GAGAGAACCAGCCGCUCCCCCAUCCCUGGGCAGGCGC Uchl1 rno-miR-34a 9 54 -UUGUUGGUCG--------------AUUC-------UGUGACGGU :| ||||||| |::| :|:||||| AGAGAACCAGCCGCUCCCCCAUCCCUGGGCAGGCGCGCGCUGCCC Uchl1 rno-miR-34c 33 54 CGUUAGUCGAUUGA-UGUGACGGA | :|| ::| :|:||||| ---CUGGGCAGGCGCGCGCUGCCC Uchl1 rno-miR-351 133 161 -GUCCGAGU--UUCC-CGAGGA---GUCCCU ||||| || |:|| ||||: ||| CCAGGC-CACCAGGGAGCUCUGUGACAGC-- Uchl1 rno-miR-363-5p 110 131 UUUAACGUAGCACU--AGGUGGGC ||| ||| ||||||| ---CUGCCCCGUCCCCUCCACCCC Uchl1 rno-miR-370 12 44 -UUGGUCCAA-----GGUGGGG--UCGUCCG- |||||| |||:||| :|||||| GAACCAGCCGCUCCCCCAUCCCUGGGCAGGCG Uchl1 rno-miR-449 13 54 -UGGUCGAU---------------UGUUA---UGUGACGGU |||||| : :||: :|:||||| AACCAGCCGCUCCCCCAUCCCUGGGCAGGCGCGCGCUGCCC Uchl1 rno-miR-493 158 181 GACCGUGU-GUCAU-CUGGAAGU- | |||| ||||: || ||||| -AGCCACACCAGUGUGAACUUCAG Uchl1 rno-miR-503 37 69 -GUCA-----UGACAAGGGCG--------ACGAU ||| :||| ||||| ||| GCAGGCGCGCGCUGC-CCCGCCCUUGGUUUGCA- Uchl1 rno-miR-7* 249 270 AUACCG---UCUGACACUAAACAAC ||| :|| ||||:||||| --CGGCCUUGGA-UGUGGUUUGUC- Uchl1 rno-miR-7b 80 102 -UUGUUUUAGUGUU--CAGAAGGU ||||| ||||: ||||||: UAACAAC--CACAGCUGUCUUCUU Uchl1 rno-let-7a 97 117 uuGAUAUGUUGGAUGAUGGAGu || |:|: :|||||:|| | ttCT-TGCGTTCTACTGCCCCg Uchl1 rno-let-7b 84 117 UUGGUGU------------GUUGGAUGAUGGAGu ||||||| |: :|||||:|| | AACCACAGCTGTCTTCTTGCGTTCTACTGCCCCg Uchl1 rno-let-7c 96 117 uugGUAUGUUGGAUGAUGGAGu | |:|: :|||||:|| | cttCTTGCGTTCTACTGCCCCg Uchl1 rno-let-7d 98 117 uGAUACGUUGGAUGAUGGAGa || |||: :|||||:|| | tCT-TGCGTTCTACTGCCCCg Uchl1 rno-let-7f 97 117 uuGAUAUGUUAGAUGAUGGAGu || |:|: ||||||:|| | ttCT-TGCGTTCTACTGCCCCg Uchl1 rno-miR-106b 62 82 uAGACGU-GACAGUCGUGAAau |:|||| || |:||||||| gTTTGCAGCT-TTAGCACTTaa Uchl1 rno-miR-128a 133 156 uuUUCUCUGG--CCAAGUGACACU |:| ||| || | |||||| ccAGGCCACCAGGGAGCTCTGTGA Uchl1 rno-miR-128b 133 156 cuUUCUCUGG--CCAAGUGACACU |:| ||| || | |||||| ccAGGCCACCAGGGAGCTCTGTGA Uchl1 rno-miR-130a 53 80 uaCGGGAA--AAUUGU----AACGUGAc |||||| || :|| | ||||| ccGCCCTTGGTTTGCAGCTTTAGCACTt Uchl1 rno-miR-130b 53 80 uaCGGG----AAA-GUAGUAA-CGUGAc |||| ||| || | || ||||| ccGCCCTTGGTTTGCAGCTTTAGCACTt Uchl1 rno-miR-140* 208 237 ACA-GGCACCA-AGAU----GGGACACCAu ||| || || | |||| |:|| |||| TGTACCTTGCTCTCTATGGTCTCTTTGGTt Uchl1 rno-miR-140* 236 265 ACAGGCA-CCAA-GAUGG----GACACCAu | ||:|| ||| | :|| |||||| TTTCTGTAAGTTACGGCCTTGGATGTGGTt Uchl1 rno-miR-151 252 273 GGAG--UUCCUCGGAGUCAGAUCA |||: | | :|::| ||||||| CCTTGGATGTGGTTT--GTCTAGT Uchl1 rno-miR-152 31 51 GGGUUCAAGACAGUACGUGACu ||| :| | | |: ||:||| CCCTGG-GCAGGCGCGCGCTGc Uchl1 rno-miR-17 59 82 ugauggACGU-GACAUUCGUGAAac |||| || | ||||||| ttggttTGCAGCT-TTAGCACTTaa Uchl1 rno-miR-184 100 121 ugggaauagucaagaGGCAGGu |||||| ttgcgttctactgccCCGTCCc Uchl1 rno-miR-20a 60 82 gauggACGU-GAUAUUCGUGAAau |||| || | ||||||| tggttTGCAGCT-TTAGCACTTaa Uchl1 rno-miR-217 236 265 uAGGUCAGUCAA----GGA--CUACGUCAu |:| || |||| ||| ||||::|| tTTCTGTAAGTTACGGCCTTGGATGTGGTt Uchl1 rno-miR-224 139 160 auuugCCUUGGUGAUCACUGaac ||:| | || ||||| caccaGGGAGCTCT-GTGACagc Uchl1 rno-miR-28 175 194 GAGUUAUCUGACACUCGAGGAa ||: | ||:| | |||||:| CTTCAGAGGC--TAAGCTCTTa Uchl1 rno-miR-290 43 68 uuuuucACGG---GGGUAUCAAACuc |||| ||| |:||||| gcgcgcTGCCCCGCCCTTGGTTTGca Uchl1 rno-miR-292-3p 27 50 uGUGAGUUUUGGACCGC-CGUGAa ||: | :: | |||| ||:|| cCATCCCTGGGCAGGCGCGCGCTg Uchl1 rno-miR-298 282 303 CCUUCUUGUCGGGAGGAGACGg |||||||:| ||::||||| GGAAGAATAAAACTTTTCTGCt Uchl1 rno-miR-31 89 105 GUCGAUACGGUCGUAGAACGga |||||:| | |||||| CAGCTGT-----CTTCTTGCgt Uchl1 rno-miR-320 52 74 aaGCGGGAGAGUUGGGUCGAAAa ||||||: : ||||||| ccCGCCCTTGGTTTGCAGCTTTa Uchl1 rno-miR-320 72 97 AAGCG-GGAGAGUUGG-GUCGAAAA- || || |:| ||||| ||||| | TTAGCACTTAACAACCACAGCTGTCT Uchl1 rno-miR-324-3p 15 43 GGUCGUC------GU-GGACCCCGUCacc ||||| | || || |||||| CCAGCCGCTCCCCCATCCCTGGGCAGgcg Uchl1 rno-miR-328 1 18 ugcCUUCCCGUCUCUCCCGGUC | |||| |||||| |||| ---GTAGGG-AGAGAGAACCAG Uchl1 rno-miR-330 236 268 AGAGACGU------CCGGG----ACACGAAACg |:||||:| ||||: |||| |||| TTTCTGTAAGTTACGGCCTTGGATGTGGTTTGt Uchl1 rno-miR-331 126 148 aagauccuaUCCG--GGUCCCcg |||| |||||| accccacccAGGCCACCAGGGag Uchl1 rno-miR-333 149 168 uuuuCAUUGAUCGUGUGGUg ||:|| : ||||||| ctctGTGACAGCCACACCAg Uchl1 rno-miR-339 18 43 acuCGAGGACCU-----CCUGUCCcu ||||| | ||:|||| gccGCTCCCCCATCCCTGGGCAGGcg Uchl1 rno-miR-346 11 43 UCUCCGUCCGUGAG----------UCCGUCUGu ||| ||| |:||| :|||||:| AGAACCAGCCGCTCCCCCATCCCTGGGCAGGCg Uchl1 rno-miR-34a 26 53 uuGUUGG---UCGAUUC---UGUGACGGu || || :|| |:| :|:||||| ccCATCCCTGGGC-AGGCGCGCGCTGCCc Uchl1 rno-miR-34a 10 27 uUGUUGGUCGAUUCUGUGACGGu | ||||||| |:|| || gAGAACCAGC-----CGCTCCCc Uchl1 rno-miR-34c 26 53 cGUUAG----UCGAUUG-AUGUGACGGa | ||| :|| ::| :|:||||| cCCATCCCTGGGCAGGCGCGCGCTGCCc Uchl1 rno-miR-351 128 147 guccGAGUUUCCCGAGGAGUCCCU | || ||| | |||||| cccaCCCA---GGCCAC-CAGGGA Uchl1 rno-miR-363-5p 107 130 uuUAACGUAGCA--CUAGGUGGGc | ||| ||| ||||||| ctACTGCCCCGTCCCCTCCACCCc Uchl1 rno-miR-370 13 42 UUGGUC--CAA---GGUGGGG--UCGUCCG |||||| | | |||:||| :|||||| AACCAGCCGCTCCCCCATCCCTGGGCAGGC Uchl1 rno-miR-449 31 53 uGG--UCGAUUGUUAUGUGACGGu || :|| ::| : :|:||||| cCCTGGGCAGGC-GCGCGCTGCCc Uchl1 rno-miR-493 157 179 GACCGUGU-GUCAU-CUGGAAGU | | |||| ||||: || ||||| CAGCCACACCAGTGTGAACTTCA Uchl1 rno-miR-503 38 53 GUCAUGACAAGGGCGACGau ||| | | |||||| CAG----GCGCGCGCTGCcc Uchl1 rno-miR-7* 247 270 AUACCG--UCUGACACUAAACAac || ||| |: ||||:||||| TACGGCCTTGGATGTGGTTTGTct Uchl1 rno-miR-7b 81 101 UUGUUUUAGUGUU--CAGAAGgu ||| || ||||: |||||| AAC--AACCACAGCTGTCTTCtt Uchl1 rno-miR-291-3p 74 81 -CCGUGUGUUUC---------ACCU----------UCGUGAAA |||:|:|: | ||| ||||||| AGGCGCGCGCUGCCCCGCCCUUGGUUUGCAGCUUUAGCACUUA Uchl1 rno-miR-320 67 74 AA--------------------GCGGGAGAGUUGGGUCGAAAA ||||||: : ||||||| CCUGGGCAGGCGCGCGCUGCCCCGCCCUUGGUUUGCAGCUUUA Uchl1 rno-miR-333 161 168 UUUU-----------------------CAUUGAUC-GUGUGGUG ||:|| || ||||||| ACCCCACCCAGGCCACCAGGGAGCUCUGUGAC-AGCCACACCAG Uchl1 rno-miR-363-5p 123 130 UUUA-------------------ACGUAGCACU--AGGUGGGC ||| ||| ||||||| ACAGCUGUCUUCUUGCGUUCUACUGCCCCGUCCCCUCCACCCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Uchl1 RAID00230247 rno-miR-338-3p miRNA MIMAT0000581 Uchl1 mRNA 29545 Prediction 0.1828 Uchl1 RAID01236244 rno-miR-497-3p miRNA MIMAT0017230 Uchl1 mRNA 29545 Prediction 0.1828 Uchl1 RAID01609675 rno-miR-320-3p miRNA MIMAT0000903 Uchl1 mRNA 29545 Prediction 0.1828 Uchl1 RAID01661907 rno-miR-130b-3p miRNA MIMAT0000837 Uchl1 mRNA 29545 Prediction 0.1828 Uchl1 RAID02877224 rno-miR-291a-3p miRNA MIMAT0000895 Uchl1 mRNA 29545 Prediction 0.1828 Uchl1 RAID03010515 rno-miR-292-5p miRNA MIMAT0000896 Uchl1 mRNA 29545 Prediction 0.1828 Uchl1 RAID03699823 rno-miR-327 miRNA MIMAT0000561 Uchl1 mRNA 29545 Prediction 0.1828