DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000574 rno-miR-140* 363616 Grap ggcaccaagauGGGACACCAu ::||||||| agagagagaacUUCUGUGGUg 2 11 698 718 [rn4:10:47831353-47831373:+] 0.4966 142 7 -15.10 -0.3494 MIMAT0004645 rno-miR-148b-5p 363616 Grap ggaCUCACAUAUUGUCUUGAAg ||| : :| ||||||| agaGAGACAGAGAGAGAACUUc 2 20 690 711 [rn4:10:47831345-47831366:+] 0.4966 147 7 -14.81 -0.1362 MIMAT0004654 rno-miR-344-5p 363616 Grap ggaccuuaGAUCGGUCCUCGGACu | |||:| ||||||| agacccucCAAGCUAUGAGCCUGg 2 17 736 759 [rn4:10:47831391-47831414:+] 0.4966 160 7 -21.97 -0.1669 MIMAT0004654 rno-miR-344-5p 363616 Grap ggacCUUAGAUCGGUC--CU-CGGACu ||||| |:::| || ||||| agguGAAUCCUGUUGGAAGAGGCCUGa 2 21 390 416 [rn4:10:47831045-47831071:+] 0.4966 123 0 -22.70 -0.3966 MIMAT0004655 rno-miR-345-3p 363616 Grap agaggucugggGAUCAAGUCCc | :||||||| ccuuggcuaugCAGGUUCAGGa 2 12 480 501 [rn4:10:47831135-47831156:+] 0.4966 143 7 -15.90 -0.1782 MIMAT0000599 rno-miR-349 363616 Grap ucucCAAUUCUGUCGUCCCGAc | |:|| | ||||||| cuguGGUGAGUC--CAGGGCUg 2 19 711 730 [rn4:10:47831366-47831385:+] 0.4966 147 7 -21.72 -0.1537 MIMAT0000603 rno-miR-20a* 363616 Grap acAUUC--ACGAGCAUUACGUCa ||:| || | ||||||| gaUAGGCAUGGAAGCAAUGCAGu 2 20 415 437 [rn4:10:47831070-47831092:+] 0.4966 146 7 -13.14 -0.1040 MIMAT0004736 rno-miR-193* 363616 Grap aguagaacgggcGUUUCUGGGu | ||||||| uccagggcuguuCUAAGACCCu 2 11 721 742 [rn4:10:47831376-47831397:+] 0.4966 142 7 -17.46 -0.3169 MIMAT0005319 rno-miR-484 363616 Grap uagcccuccccugACUCGGACu |||||||| acccuccaagcuaUGAGCCUGg 2 10 738 759 [rn4:10:47831393-47831414:+] 0.4966 145 7 -16.16 -0.1718 MIMAT0012826 rno-miR-220 363616 Grap uccagagacuguGACACCACc |||||||| gagagagaacuuCUGUGGUGa 2 10 699 719 [rn4:10:47831354-47831374:+] 0.4966 145 7 -15.23 -0.3533 MIMAT0012837 rno-miR-632 363616 Grap aggccgUCCUU-UGUCUGUg :|||| ||||||| gcuuugGGGAAGACAGACAg 2 14 646 665 [rn4:10:47831301-47831320:+] 0.4966 152 7 -17.74 -0.1269 MIMAT0012837 rno-miR-632 363616 Grap aggCCGUC-CUUUGUCUGUg | ||| |:||||||| acaGACAGACAGACAGACAg 2 17 662 681 [rn4:10:47831317-47831336:+] 0.4966 151 7 -15.48 -0.3897 MIMAT0012840 rno-miR-802 363616 Grap uuccuacuuagaaaCAAUGACu ||||||| uucagguugugcaaGUUACUGg 2 9 254 275 [rn4:10:47830909-47830930:+] 0.4527 140 7 -14.53 -0.1919 MIMAT0012842 rno-miR-875 363616 Grap guGGAC-UAUUUUGACUCC-AUAu || | || ::| ||||| ||| caCCAGCAUUGGAAUGAGGUUAUa 2 21 363 386 [rn4:10:47831018-47831041:+] 0.4761 123 0 -15.42 -0.5646 MIMAT0012846 rno-miR-201 363616 Grap uucuuguuacggaAUGACUCa ||||||| uucagauugggaaUACUGAGu 2 9 603 623 [rn4:10:47831258-47831278:+] 0.4966 140 7 -12.35 -0.2053 MIMAT0001619 rno-miR-322 363616 Grap aggUUUUGUACUUAACGACGAc :|| | |||: ||||||| gagGAAUCCUGAGCUGCUGCUa 2 20 564 585 [rn4:10:47831219-47831240:+] 0.4966 163 7 -15.73 -0.1591 MIMAT0000560 rno-miR-326 363616 Grap ugaccuccuucccGGGUCUCc ||||||| ugagcugcugcuaCCCAGAGu 2 9 573 593 [rn4:10:47831228-47831248:+] 0.4966 140 7 -15.49 -0.2516 MIMAT0004641 rno-miR-330 363616 Grap cgGAUUCUGUGUC--CGGGUCUCu ||:|| ::| | ||||||| ucCUGAGCUGCUGCUACCCAGAGu 2 21 570 593 [rn4:10:47831225-47831248:+] 0.4966 151 7 -24.85 -0.2516 MIMAT0000589 rno-miR-342-3p 363616 Grap ugCCCACGC-UAAAGACA-CACUCu | | | | | |||||| ||||| caGAGAGAGAACUUCUGUGGUGAGu 2 22 697 721 [rn4:10:47831352-47831376:+] 0.4966 128 0 -15.74 -0.1009 MIMAT0000780 rno-miR-7b 363616 Grap uguuGUUUUAGU-GUUCA-GAAGGu | |: ||| |||| ||||| gggcCCAGCUCAGAAAGUGCUUCCc 2 20 193 217 [rn4:10:47830848-47830872:+] 0.4527 122 0 -13.86 -0.1682 MIMAT0000784 rno-miR-15b 363616 Grap acaUUUGGUACUACACGACGAu :||:| ||| ||||||| gagGAAUCCUGAGCUGCUGCUa 2 20 564 585 [rn4:10:47831219-47831240:+] 0.4966 163 7 -18.74 -0.1591 MIMAT0000785 rno-miR-16 363616 Grap gcggUUAUAAAUGCACGACGAu ||| | | ||||||| gaggAAUCCUGAGCUGCUGCUa 2 19 564 585 [rn4:10:47831219-47831240:+] 0.4966 150 7 -14.25 -0.1607 MIMAT0000787 rno-miR-18a 363616 Grap gauaGACGUGAUCUACGUGGAAu | | :: ||| ||||||| uaccCAGAGUCAGA-GCACCUUc 2 20 584 605 [rn4:10:47831239-47831260:+] 0.4966 149 7 -12.92 -0.2324 MIMAT0004729 rno-miR-125a-3p 363616 Grap ccgaggguucuuggAGUGGACa ||||||| cuggguuugugcuaUCACCUGc 2 9 120 141 [rn4:10:47830775-47830796:+] 0.4527 140 7 -16.41 -0.2246 MIMAT0000839 rno-miR-133a 363616 Grap gucgaccAACUUCCCCUGGUUu |||| ||||||| uccagacUUGA---GGACCAAc 2 16 162 180 [rn4:10:47830817-47830835:+] 0.4527 143 7 -14.69 -0.1545 MIMAT0000857 rno-miR-181c 363616 Grap ugaguggcuGUCCAACUUACAa || | ||||||| agcuggcauCAAG-UGAAUGUa 2 14 515 535 [rn4:10:47831170-47831190:+] 0.4966 143 7 -15.25 -0.1145 MIMAT0000858 rno-miR-181a 363616 Grap ugagUGGCUGUCG-CAACUUACAa :|:|:|| | ||||||| gacaGCUGGCAUCAAGUGAAUGUa 2 20 512 535 [rn4:10:47831167-47831190:+] 0.4966 150 7 -16.94 -0.1237 MIMAT0000859 rno-miR-181b 363616 Grap ugGGUGGCUGUCGUU-ACUUACAa | :|:|:|| ||| ||||||| gaCAGCUGGCAUCAAGUGAAUGUa 2 22 512 535 [rn4:10:47831167-47831190:+] 0.4966 168 7 -20.18 -0.1237 MIMAT0000870 rno-miR-195 363616 Grap cggUUAUAAAGAC---ACGACGAu |: | | ||| ||||||| uggAGGAAUCCUGAGCUGCUGCUa 2 19 562 585 [rn4:10:47831217-47831240:+] 0.4966 145 7 -15.09 -0.1607 MIMAT0000887 rno-miR-217 363616 Grap uaggucagucaaggacUACGUCAu ||||||| gauaggcauggaagcaAUGCAGUg 2 9 415 438 [rn4:10:47831070-47831093:+] 0.4966 140 7 -13.97 -0.1051 MIMAT0003126 rno-miR-133b 363616 Grap aucgaccAACUUCCCCUGGUUu |||| ||||||| uccagacUUGA---GGACCAAc 2 16 162 180 [rn4:10:47830817-47830835:+] 0.4527 143 7 -11.72 -0.1545 MIMAT0003383 rno-miR-497 363616 Grap augUUUGGUGUCACACGACGAc || || || ||||||| aggAAUCCUGAG-CUGCUGCUa 2 20 565 585 [rn4:10:47831220-47831240:+] 0.4966 149 7 -15.32 -0.1607 MIMAT0005299 rno-miR-181d 363616 Grap ugGGUGGCUGUUGUU-ACUUACAa | :|:|:|| ||| ||||||| gaCAGCUGGCAUCAAGUGAAUGUa 2 22 512 535 [rn4:10:47831167-47831190:+] 0.4966 168 7 -20.85 -0.1237 MIMAT0005311 rno-miR-410 363616 Grap uguccgguagacaCAAUAUAa ||||||| gcauuggaaugagGUUAUAUa 2 9 368 388 [rn4:10:47831023-47831043:+] 0.4761 140 7 -7.73 -0.3853 MIMAT0005341 rno-miR-488 363616 Grap cugguucuUUGUCGGAAAGUu || :|||||||| caucuuccAAAGGCCUUUCAg 2 14 238 258 [rn4:10:47830893-47830913:+] 0.4527 153 7 -17.76 -0.1069

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Grap RAID00237218 rno-miR-342-3p miRNA MIMAT0000589 Grap mRNA 363616 Prediction 0.1828 Grap RAID00373160 rno-miR-484 miRNA MIMAT0005319 Grap mRNA 363616 Prediction 0.1828 Grap RAID00988426 rno-miR-193a-5p miRNA MIMAT0004736 Grap mRNA 363616 Prediction 0.1828 Grap RAID01002587 rno-miR-410-3p miRNA MIMAT0005311 Grap mRNA 363616 Prediction 0.1828 Grap RAID01126655 rno-miR-125a-3p miRNA MIMAT0004729 Grap mRNA 363616 Prediction 0.1828 Grap RAID01175974 rno-miR-497-5p miRNA MIMAT0003383 Grap mRNA 363616 Prediction 0.1828 Grap RAID01274869 rno-miR-181a-5p miRNA MIMAT0000858 Grap mRNA 363616 Prediction 0.1828 Grap RAID01521260 rno-miR-322-5p miRNA MIMAT0001619 Grap mRNA 363616 Prediction 0.1828 Grap RAID01521621 rno-miR-181c-5p miRNA MIMAT0000857 Grap mRNA 363616 Prediction 0.1828 Grap RAID01619060 rno-miR-874-5p miRNA MIMAT0017290 Grap mRNA 363616 Prediction 0.1828 Grap RAID01626331 rno-miR-181b-5p miRNA MIMAT0000859 Grap mRNA 363616 Prediction 0.1828 Grap RAID01704534 rno-miR-326-3p miRNA MIMAT0000560 Grap mRNA 363616 Prediction 0.2202 Grap RAID01938406 rno-miR-16-5p miRNA MIMAT0000785 Grap mRNA 363616 Prediction 0.1828 Grap RAID01940073 rno-miR-330-5p miRNA MIMAT0004641 Grap mRNA 363616 Prediction 0.2202 Grap RAID01959332 rno-miR-18a-5p miRNA MIMAT0000787 Grap mRNA 363616 Prediction 0.1828 Grap RAID02081289 rno-miR-770-3p miRNA MIMAT0017317 Grap mRNA 363616 Prediction 0.1828 Grap RAID02458635 rno-miR-3593-5p miRNA MIMAT0017896 Grap mRNA 363616 Prediction 0.1828 Grap RAID02498996 rno-miR-6334 miRNA MIMAT0025075 Grap mRNA 363616 Prediction 0.1828 Grap RAID03416038 rno-miR-133b-3p miRNA MIMAT0003126 Grap mRNA 363616 Prediction 0.2202 Grap RAID03478463 rno-miR-133a-3p miRNA MIMAT0000839 Grap mRNA 363616 Prediction 0.2202 Grap RAID03535952 rno-miR-7b miRNA MIMAT0000780 Grap mRNA 363616 Prediction 0.1828 Grap RAID03644613 rno-miR-15b-5p miRNA MIMAT0000784 Grap mRNA 363616 Prediction 0.1828 Grap RAID03654302 rno-miR-217-5p miRNA MIMAT0000887 Grap mRNA 363616 Prediction 0.1828 Grap RAID03666340 rno-miR-181d-5p miRNA MIMAT0005299 Grap mRNA 363616 Prediction 0.1828 Grap RAID03666961 rno-miR-488-3p miRNA MIMAT0005341 Grap mRNA 363616 Prediction 0.1828 Grap RAID03958190 rno-miR-195-5p miRNA MIMAT0000870 Grap mRNA 363616 Prediction 0.1828 Grap RAID03974849 rno-miR-344a-5p miRNA MIMAT0004654 Grap mRNA 363616 Prediction 0.1828