DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Kctd3; rCG_20458 rno-let-7a 683 698 UUGAUAUGUUGGAUGAUGGAGU- |::|:||||:||| --------CAUUUGCUACUUCAG Kctd3; rCG_20458 rno-let-7b 666 698 UUGGUGUGU----------UGGAUGAUGGAGU- :|||| : |::|:||||:||| -UUCACAGGGAAUCUCCCCAUUUGCUACUUCAG Kctd3; rCG_20458 rno-let-7d 491 509 -UGAUACGUUGGAUGAUGGAGA- ||||||| ||||| ||| CACUAUGC-----ACUACGUCUU Kctd3; rCG_20458 rno-let-7d* 294 321 -UCU------UUCCGUCGUCCAGCAUAUC ||| :||||||| || ||||| UAGAGCAUGUGAGGCAGC-GGCCGUAUU- Kctd3; rCG_20458 rno-let-7i 274 297 UGUCGUGUU-UGAUGAUGGAGU- |||||| | || |||||:| CCAGCACCACAGUAGUACCUUAG Kctd3; rCG_20458 rno-miR-1* 207 232 CCCAUGUAUU---UCUUCAUACACG || ||:|: || |||:|||| AGGCACGUGUGACAGCAGUGUGUGA Kctd3; rCG_20458 rno-miR-103 144 174 AGUAUCGGGA-------CAUGUUACGACGA || ||||| ||:||:|| ||| GCAGAGCCCACUCCCCGGUGCAGUGAUGCC Kctd3; rCG_20458 rno-miR-107 141 174 ACUA---UCGGGA-------CAUGUUACGACGA || ||||| ||:||:|| ||| GGAGCAGAGCCCACUCCCCGGUGCAGUGAUGCC Kctd3; rCG_20458 rno-miR-10a 645 676 GUGUUUA------AG-CCUAGA--UGUCCCAU |||:| || ||:| | |||||| GACAGAGGGGAAGUCUGGGUGUUCACAGGGA- Kctd3; rCG_20458 rno-miR-10b 74 97 UGUGUUUAAGCCAAGAUGUCCC- :||| ||||||||| UUACAUCAAAAACUCUACAGGGC Kctd3; rCG_20458 rno-miR-125a 646 677 -GUGUCCAAUUU---CCCAGA---GUCCCU- || ||| ||: |||| | |||||| ACAGAGGGGAAGUCUGGGUGUUCACAGGGAA Kctd3; rCG_20458 rno-miR-125b 652 677 AGUGUUCAAUCCCAGA---GUCCCU- : |||| |||| | |||||| -GGGAAGUCUGGGUGUUCACAGGGAA Kctd3; rCG_20458 rno-miR-126 143 166 -CGUAAUAA-UGAGU-GCCAUGCU ||| |||| ||||:| AGCAGAGCCCACUCCCCGGUGCA- Kctd3; rCG_20458 rno-miR-128a 510 533 UUUUCUCUGGCCA-----AGUGACACU- |: :||| |||:||||: -----CGGGUGGUUUAUUUCAUUGUGGG Kctd3; rCG_20458 rno-miR-128b 510 533 CUUUCUCUGGCCA-----AGUGACACU- |: :||| |||:||||: -----CGGGUGGUUUAUUUCAUUGUGGG Kctd3; rCG_20458 rno-miR-130a 395 415 UACGGGAAAAUUGUAACGUGAC- ||||| |: |||||| || -AGCCCU--UGUGAUUGCAGUGU Kctd3; rCG_20458 rno-miR-130b 395 415 UACGGGAAAGUAGUAACGUGAC- |||||| :| |||||| || -AGCCCUU--GUGAUUGCAGUGU Kctd3; rCG_20458 rno-miR-132 93 118 GCUG-GU--ACCGACAUCUGACAAU |:| || ||||||| | |||| GGGCACAGUUGGCUGUUUAGUGUUU Kctd3; rCG_20458 rno-miR-134 251 286 -GGGAG------------ACCAGUUGGUCA--GUGU- ||||| ||||| |||| |||| GCCCUCCCUGCUGGUGUUUGGUC--CCAGCACCACAG Kctd3; rCG_20458 rno-miR-136 840 861 AGGUAGU-AGUUUUGUUUACCUCA ||| || :||||||||| -ACAUAUUUCU--GCAAAUGGAGA Kctd3; rCG_20458 rno-miR-140 697 716 -GAUGGUAUCCCAUUUUGGUGA- ||||: ||| |:||||| GCUACUUU-GGG---AGCCACUG Kctd3; rCG_20458 rno-miR-140* 341 367 -ACAGG----CACCAAGAUGGGACACCAU ||||: ||||| ||||| ||| CUGUCUUGCAGUGGU---ACCCUAAGGUU Kctd3; rCG_20458 rno-miR-144 417 448 -GAUCA-UGUAGUA------GAUAUGACAU- |||| |||| || ||||:||||: ACUAGCCACAUGAUGAGGUGCUAUGCUGUGA Kctd3; rCG_20458 rno-miR-146 4 27 UUGGGUACCUUAA-GUCAAGAGU ||||| |||||||: CACCCAGUGCAUGGCAGUUCUUC Kctd3; rCG_20458 rno-miR-152 333 356 -GGGUUCAAGACAGUACGUGACU- ||||:| ||||| |||| ||: GCCCAGGC-CUGUCUUGCAGUGGU Kctd3; rCG_20458 rno-miR-15b 411 441 -ACAU----UUGGU--ACUACACGACGAU- ||| |:||| ||||| | ||||| GUGUUUACUAGCCACAUGAUGAGGUGCUAU Kctd3; rCG_20458 rno-miR-16 420 446 GCGGU-UAUAAAUGCACGA--CGAU- |||| ||: | ||||| |||: AGCCACAUGAUGAGGUGCUAUGCUGU Kctd3; rCG_20458 rno-miR-18 270 297 AUAGA--CGUGA--UCUACGUGGAAU- :|| |||| || |:|||||| GGUCCCAGCACCACAGUAGUACCUUAG Kctd3; rCG_20458 rno-miR-183 408 443 -GUCACUUAAGAUGG-------------UCACGGUAU- ||||| |:|||: :||||:||: GCAGUG---UUUACUAGCCACAUGAUGAGGUGCUAUGC Kctd3; rCG_20458 rno-miR-184 156 179 UGGGAAUAGUCAAGA-GGCAGGU ||| |||| |||||| CCCCGGUGCAGUGAUGCCGUCCU Kctd3; rCG_20458 rno-miR-189 182 214 -UGA-CUAUAGUCGAG-UCA-----UCCGUG- :|| |: ::|||| ||| |||||| AGCUCGGAAGUGGCUCUAGUCCUGCAGGCACG Kctd3; rCG_20458 rno-miR-192 511 537 -CCGACAGUU-AAGUA---UCCAGUC ||: ||: ||||| :||||| GGGUGGUUUAUUUCAUUGUGGGUCAU Kctd3; rCG_20458 rno-miR-199a 648 676 CUUGUCCAUCAGACUU----GUGACCC- :| :|| ||||||:: ||| ||| AGAGGGGAAGUCUGGGUGUUCACAGGGA Kctd3; rCG_20458 rno-miR-200a 383 417 -UGUAGCAAUGGUC-----------UGUCACAAU |||| | |||| :||||||| AACAUGGGCUCCAGCCCUUGUGAUUGCAGUGUUU Kctd3; rCG_20458 rno-miR-204 651 678 -UCCGUAU--CCUACU-GUUUCCCUU- :|| ||:|| || |||||| GGGGAAGUCUGGGUGUUCACAGGGAAU Kctd3; rCG_20458 rno-miR-207 120 141 UUCCCUCCUCUCGGUCCUCUUCG- ||| ||||| | |||||| -UGGGCC--GAGCCUGUAGAAGCA Kctd3; rCG_20458 rno-miR-20b* 185 210 -GUCUUCA-CGAGU---GUGACGUCA |:||||| |||| | |||||| UCGGAAGUGGCUCUAGUC-CUGCAGG Kctd3; rCG_20458 rno-miR-211 629 657 UCCGUUUCCUA-----CUGUUUCCCUU- ||:||| ||||:||||:| UGGUAAAUAUAAUAACGACAGAGGGGAA Kctd3; rCG_20458 rno-miR-214 245 265 -GACGGACAGACACGGACGACA ||||| || ||||||| CCUGCCGCCCUC--CCUGCUGG Kctd3; rCG_20458 rno-miR-25 120 170 AGUCUGGCUC---------------UGU------------ UCACGUUAC :|:||||| :|| :|||||:|| -UGGGCCGAGCCUGUAGAAGCAGGAGCAGAGCCCACUCCCCGGUGCAGUGA Kctd3; rCG_20458 rno-miR-27a 703 719 CGCCUUGAAUCGGUGACACUU :||: |||||||||| UUGGG----AGCCACUGUGU- Kctd3; rCG_20458 rno-miR-27b 694 719 CGUCU-UGAA----UCGGUGACACUU ||| |||| |||||||||| UCAGCUACUUUGGGAGCCACUGUGU- Kctd3; rCG_20458 rno-miR-292-3p 193 214 UGUGAGUUUUGGACCG-CCGUGAA :||| |||| | ||||| -GGCUCUAGUCCUG-CAGGCACG- Kctd3; rCG_20458 rno-miR-298 234 264 CCUUCU--------UGUCGGGAGGAGACGG- |:|| :| ||||||| ||||: AGGAGUCUUGCCCUGCCGCCCUCC-CUGCUG Kctd3; rCG_20458 rno-miR-29a 419 441 -UUGGCUAAAGUCUACCACGAU- |:|| || ||||||| UAGCCACAUGAUGA-GGUGCUAU Kctd3; rCG_20458 rno-miR-29b 422 441 UUGUG-ACUAAAGUUUACCACGAU- ||| |||| ||||||| -CCACAUGAUGA-----GGUGCUAU Kctd3; rCG_20458 rno-miR-30b 655 677 -UC-GACUCACA-----UCCUACAAAUGU || |||:|||| :||| AAGUCUGGGUGUUCACAGGGAA------- Kctd3; rCG_20458 rno-miR-30c 648 673 CGACUCUCA--CAU-CCUACAAAUGU- |||:| || ||:|||| ||| --AGAGGGGAAGUCUGGGUGUUCACAG Kctd3; rCG_20458 rno-miR-30e 655 673 AGGUCAGUUCCUACAAAUGU- |||| ||:|||| ||| --AAGUCU-GGGUGUUCACAG Kctd3; rCG_20458 rno-miR-31 218 247 -GUCG--AUACGGUCGU----AGAACGGA |||| |:||: |||| ||||||| ACAGCAGUGUGUGAGCAGGAGUCUUGCCC Kctd3; rCG_20458 rno-miR-32 708 728 -CGUUGAAUCAUUACACGUUAU- || ||| :||||||:|: AGCCACUGU---GUGUGCAGUGU Kctd3; rCG_20458 rno-miR-324-3p 282 315 GGUCGUCGUGG----------ACCCCGUCACC- |||:||:||| || ||||| || ACAGUAGUACCUUAGAGCAUGUGAGGCAGCGGC Kctd3; rCG_20458 rno-miR-327 588 611 UGGGAGUACGGGGAGU---UCC- |||| | |:||:|| :|| UCCCUGAAGUCCUUCCAGUGGGA Kctd3; rCG_20458 rno-miR-331 469 490 AAGAUCCUAUCCGGGUCCCCG- ||| || ||:||: |||| -ACUAUCAUUGGUCCGCGGGCU Kctd3; rCG_20458 rno-miR-333 262 285 UUUUCAUUGAUCG----UGUGGUG- :||: :|:|: :|||||| --UGGUGUUUGGUCCCAGCACCACA Kctd3; rCG_20458 rno-miR-339 651 677 ACUCGA-GGACCUCC---UGUCCCU- |:| :||||: | ||||||| GGGGAAGUCUGGGUGUUCACAGGGAA Kctd3; rCG_20458 rno-miR-342 509 534 CUGCCCACGC--UAAAGACACACUCU |||||| ||||| ||||:| -CCGGGUGGUUUAUUUCAUUGUGGGU Kctd3; rCG_20458 rno-miR-343 657 677 -AGACCCGU--GUGCCUCCCUCU ||||||: ||| ||||| GUCUGGGUGUUCAC--AGGGAA- Kctd3; rCG_20458 rno-miR-345 259 281 CGUGACCUGAUCCCCAG--UCGU- :|||| | |||| |||| -UGCUGGUGUUU-GGUCCCAGCAC Kctd3; rCG_20458 rno-miR-347 659 677 -ACCCGCUGGGUCUCCCUGU ||||:| ::|| ||||| CUGGGUG-UUCACAGGGAA- Kctd3; rCG_20458 rno-miR-349 294 316 -UCUCCA--AUUCUGUCGUCCCGAC |||| |:||:|||| ||| UAGAGCAUGUGAGGCAGC--GGCC- Kctd3; rCG_20458 rno-miR-34c 687 713 -CGUU--AGUCGAUUGAUGUGACGGA || ||||||| :| : ||| UGCUACUUCAGCUACUUUGGGAGCCA Kctd3; rCG_20458 rno-miR-351 651 677 GUCCG--AGUUUCC-CGAGGAGUCCCU- :|| || :|| |:|| |||||| GGGGAAGUCU-GGGUGUUCA-CAGGGAA Kctd3; rCG_20458 rno-miR-352 491 509 AUGAUACGUUGGAUGAUGAGA- |||||||| |||| ||| CACUAUGCA--CUACG--UCUU Kctd3; rCG_20458 rno-miR-376c 604 626 GCACUUUAAA-GGAGAUACAA- |||::| | |||:|||| AGUGGGAACAGCGUCUGUGUUU Kctd3; rCG_20458 rno-miR-381 387 406 CUCUCGAA--CGGGAACAUAU |:||| ||||||||: -UGGGCUCCAGCCCUUGUGA- Kctd3; rCG_20458 rno-miR-421 295 310 GUUGUUUGUAAAUUACUCCGG :|:||| :|||||| ---AGAGCAU---GUGAGGCA Kctd3; rCG_20458 rno-miR-424 421 446 AGGUUUUGUACUUAACGA--CGAC- ||| | |||| |||| |||| GCCACAUGAUGAGGUGCUAUGCUGU Kctd3; rCG_20458 rno-miR-485 117 133 CUUAAGUAGUGCCGG-UCGGAGA || |||| ||||| ------UUCUGGGCCGAGCCUG- Kctd3; rCG_20458 rno-miR-493 276 296 GACCGU-GUGUCAUC-UGGAAGU ||| |||||||| ||||| --AGCACCACAGUAGUACCUUA- Kctd3; rCG_20458 rno-miR-505 606 630 -CCUUUGGUCGUU--CAC-AACUG- ||:|| ||||: ||| ||||: UGGGAA-CAGCGUCUGUGUUUGAUU Kctd3; rCG_20458 rno-miR-7 491 513 UUGUUUUAGUGAU-CAGAAGGU- || ||||| |||||||: CACUAUG-CACUACGUCUUCCGG Kctd3; rCG_20458 rno-miR-7b 491 513 UUGUUUUAGUGUU-CAGAAGGU- || ||| |||||||: CACUAUG-CACUACGUCUUCCGG Kctd3; rCG_20458 rno-miR-92 120 170 GUCCGGC--------------CCU-GU-------------UCACGUUAU :||||| ||| || :|||||:|: UGGGCCGAGCCUGUAGAAGCAGGAGCAGAGCCCACUCCCCGGUGCAGUGA Kctd3; rCG_20458 rno-miR-98 683 698 UUGUUAUGUUGAAUGAUGGAGU- |:||:||||:||| --------CAUUUGCUACUUCAG Kctd3; rCG_20458 rno-miR-99b 481 517 -GCGUUCCAGCCA-----------AGAU-GCCCAC- |||::| || ||| |||||| CCGCGGGCUCCACUAUGCACUACGUCUUCCGGGUGG Kctd3; rCG_20458 rno-let-7a 675 696 uugauauGUUGGAUGAUGGAGU | |::|:||||:||| aatctccCCATTTGCTACTTCA Kctd3; rCG_20458 rno-let-7b 675 696 UUGGUGUGUUGGAUGAUGGAGU ||:| | | |::|:||||:||| AATCTCCCCATTTGCTACTTCA Kctd3; rCG_20458 rno-let-7d 492 507 UGAUACGUUGGAUGAUGGAGA ||||||| ||||| ||| ACTATGC-----ACTACGTCT Kctd3; rCG_20458 rno-let-7d* 301 321 uCUUUCCGUCGUCCAGCAUAuc | :||||||| || ||||| tGTGAGGCAGC-GGCCGTATtc Kctd3; rCG_20458 rno-miR-103 151 173 aGUAUCGGGACAUGUUACGACGa || ||| ||:||:|| ||| cCACTCCCCGGTGCAGTGATGCc Kctd3; rCG_20458 rno-miR-107 151 173 acuaucGGGACAUGUUACGACGa ||| ||:||:|| ||| ccactcCCCGGTGCAGTGATGCc Kctd3; rCG_20458 rno-miR-10a 652 676 gugUUUAAGCCUAGA--UGUCCCau ||:| :||:| | |||||| gggAAGTCTGGGTGTTCACAGGGaa Kctd3; rCG_20458 rno-miR-10b 76 95 UGU-GUUUAAGCCAAGAUGUCCC ||| |||| | ||||||||| ACATCAAAAAC---TCTACAGGG Kctd3; rCG_20458 rno-miR-125a 647 675 GUGUCCAAUUU---CCC---AGAGUCCCU || ||| ||: ||| || |||||| CAGAGGGGAAGTCTGGGTGTTCACAGGGA Kctd3; rCG_20458 rno-miR-125b 651 675 agugUUCAAUCCC---AGAGUCCCU |||| ||| || |||||| ggggAAGTCTGGGTGTTCACAGGGA Kctd3; rCG_20458 rno-miR-126 145 166 cguaauaaUGA-GUGCCAUGcu ||| | ||||:| cagagcccACTCCCCGGTGCag Kctd3; rCG_20458 rno-miR-128a 701 718 uuuuCUCUGGCCAAGUGACACu |:|| | ||||||| ctttGGGAGC----CACTGTGt Kctd3; rCG_20458 rno-miR-128b 701 718 cuuuCUCUGGCCAAGUGACACu |:|| | ||||||| ctttGGGAGC----CACTGTGt Kctd3; rCG_20458 rno-miR-130a 394 413 uaCGGGAAAAUUGUAACGUGAC |||||| |: |||||| || caGCCCTTGTG--ATTGCAGTG Kctd3; rCG_20458 rno-miR-130b 394 413 uaCGGGAAAGUAGUAACGUGAC |||||| :| |||||| || caGCCCTT--GTGATTGCAGTG Kctd3; rCG_20458 rno-miR-132 87 110 gcugGUACC--GACAUCUGACAAu || || | || |:||||| tctaCAGGGCACAGTTGGCTGTTt Kctd3; rCG_20458 rno-miR-134 264 281 gggAGACCAGUUGGUCAGUGu |:||||| |||| ||| gtgTTTGGTC--CCAG-CACc Kctd3; rCG_20458 rno-miR-136 839 860 AGGUAGUAGUUUUGUUUACCUCa | ||| ||: :||||||||| TACAT-ATTTCTGCAAATGGAGa Kctd3; rCG_20458 rno-miR-140 698 714 GAUGGUAUCCCAUUUUGGUGA ||||: | || :|:||||| CTACTTT--GG--GAGCCACT Kctd3; rCG_20458 rno-miR-140* 332 356 ACAGGCACCAAGAUGG---GACACCAU || || || ||::| | |||||| TG-CCCAGG-CCTGTCTTGCAGTGGTA Kctd3; rCG_20458 rno-miR-144 418 446 GAUC-AUGUAGUA------GAUAUGACAu |||| |||| || ||||:|||| CTAGCCACATGATGAGGTGCTATGCTGTg Kctd3; rCG_20458 rno-miR-152 334 354 GGGUUCAAGACAGUACGUGACu ||||:| ||||| |||| || CCCAGG-CCTGTCTTGCAGTGg Kctd3; rCG_20458 rno-miR-15b 417 444 acAUUUG-GUACUA---CACG--ACGAu ||: | |||||| |||| |||| acTAGCCACATGATGAGGTGCTATGCTg Kctd3; rCG_20458 rno-miR-18 272 295 auaGACGUG--AUCUACGUGGAAU | |||| || |:|||||| tccCAGCACCACAGTAGTACCTTA Kctd3; rCG_20458 rno-miR-183 409 441 GUCACUUAAGAU-GGU---------CACGGUAu ||||| | ||| ||| ||||:|| CAGTGTTTACTAGCCACATGATGAGGTGCTATg Kctd3; rCG_20458 rno-miR-184 155 178 uGGGAAUA-GUCAAGA-GGCAGGu ||| :| |||| | |||||| tCCCCGGTGCAGTGATGCCGTCCt Kctd3; rCG_20458 rno-miR-189 190 212 UGACUAUAGUCGAGUCAUCCGUG | ||: :||: | | |||||| AGTGGCTCTAGTCCTGCAGGCAC Kctd3; rCG_20458 rno-miR-199a 649 674 CUUGUCCAUCAGACU----UGUGACCC ||: :|| ||||||: ||| ||| GAG-GGGAAGTCTGGGTGTTCACAGGG Kctd3; rCG_20458 rno-miR-200a 567 585 uGUA-GCAAUGGUCUGUCACAAu ||| ||| || ||||||| gCATGCGT--CC--CCAGTGTTt Kctd3; rCG_20458 rno-miR-204 656 676 UCCGUAUCCUAC-UGUUUCCCUU || | | ||:|| || |||||| AGTC-T-GGGTGTTCACAGGGAA Kctd3; rCG_20458 rno-miR-204 629 655 uCCG--UAUCCUA---CUGUUUCCCuu ||: ||| || ||||:|||| tGGTAAATATAATAACGACAGAGGGga Kctd3; rCG_20458 rno-miR-207 117 139 uuccCUCCUCUCGGUCCUCUUCG |:| ||||| | |||||| ttctGGGCCGAGCCTGTAGAAGC Kctd3; rCG_20458 rno-miR-207 136 167 UUC--CCUCCUCUC-GGU------CCUCUUCg ||| |||| |||| ||| || | || AAGCAGGAGCAGAGCCCACTCCCCGGTGCAGt Kctd3; rCG_20458 rno-miR-20b* 186 209 GUCUUCA-CGAG--UGUGACGUCa |:||||| |||| :: |||||| CGGAAGTGGCTCTAGTCCTGCAGg Kctd3; rCG_20458 rno-miR-211 650 676 UCCGUUU----CCUAC-UGUUUCCCUU ||| :|| ||:|| || |||||| AGGGGAAGTCTGGGTGTTCACAGGGAA Kctd3; rCG_20458 rno-miR-214 246 264 GACGGACAGACACGGACGACa ||||| | | | ||||||| CTGCC-G-CCCTCCCTGCTGg Kctd3; rCG_20458 rno-miR-25 144 168 aGUCU-GGCU--CUGUUCACGUUAC |||| || | | :|||||:|| gCAGAGCCCACTCCCCGGTGCAGTG Kctd3; rCG_20458 rno-miR-27a 695 719 cgccuUGAA----UCGGUGACACuu |||| |||||||||| cagctACTTTGGGAGCCACTGTGtg Kctd3; rCG_20458 rno-miR-27b 694 719 cGUC-UUGAA----UCGGUGACACuu ||| |||| |||||||||| tCAGCTACTTTGGGAGCCACTGTGtg Kctd3; rCG_20458 rno-miR-292-3p 192 214 uguGAGUUUUGGACCGCCGUGaa ||| |: |||| ||||| tggCTCTAGTCCTGCAGGCACgt Kctd3; rCG_20458 rno-miR-298 242 262 ccuucuuGUCGGGAGGAGACGg | ||||||| |||| tgccctgCCGCCCTCC-CTGCt Kctd3; rCG_20458 rno-miR-29b 421 439 uuGUG-ACUAAAGUUUACCACGAU ||| |||| :| ||||||| gcCACATGAT---GA--GGTGCTA Kctd3; rCG_20458 rno-miR-30b 650 671 UCGAC-UCACAUCCUACAAAUGU || | ||| | ||:|||| ||| AGGGGAAGTCT-GGGTGTTCACA Kctd3; rCG_20458 rno-miR-30c 646 671 cGACUC----UCACAUCCUACAAAUGU | ||| ||| | ||:|||| ||| aCAGAGGGGAAGTCT-GGGTGTTCACA Kctd3; rCG_20458 rno-miR-30e 653 671 aggUCAGUUCCUACAAAUGU |||| ||:|||| ||| ggaAGTC-TGGGTGTTCACA Kctd3; rCG_20458 rno-miR-31 219 246 GUCG--AUACGGUCGU----AGAACGGa |||| |:||: |||| ||||||| CAGCAGTGTGTGAGCAGGAGTCTTGCCc Kctd3; rCG_20458 rno-miR-32 709 726 CGUUGAAUCAUUACACGUUAu || ||| || :||||||:| GCCACT--GT-GTGTGCAGTg Kctd3; rCG_20458 rno-miR-324-3p 291 313 GG--UCGUCGUGGACCCCGUCACC || || ||||: || ||||| || CCTTAG-AGCATGTGAGGCAGCGG Kctd3; rCG_20458 rno-miR-329 647 669 uUUUUCCAAUC-GACCCACAcaa |:|:|| || |||||||| cAGAGGGGAAGTCTGGGTGTtca Kctd3; rCG_20458 rno-miR-331 468 488 aaGAUCCUAUCCGGGUCCCCG ||| || ||:||: |||| caCTATCATTGGTCCGCGGGC Kctd3; rCG_20458 rno-miR-333 260 283 uuuuCAUUGAUC---GU-GUGGUG ||: :|:| || |||||| gctgGTGTTTGGTCCCAGCACCAC Kctd3; rCG_20458 rno-miR-339 653 675 aCUCGAGGACCUC--CUGUCCCU || ||: || | ||||||| gGAAGTCTGGGTGTTCACAGGGA Kctd3; rCG_20458 rno-miR-342 208 233 CUGCCCACGCUAAAG--ACACACUCu |:| |||:|| | |||||||| GGCACGTGTGACAGCAGTGTGTGAGc Kctd3; rCG_20458 rno-miR-342 508 533 cuGCCCAC--GCUAAAGACACACUCu |||||| : ||||| ||||:| tcCGGGTGGTTTATTTCATTGTGGGt Kctd3; rCG_20458 rno-miR-343 658 677 AGACCCGU--GUGCCUCCCUcu ||||||:: ||| ||||| TCTGGGTGTTCAC--AGGGAat Kctd3; rCG_20458 rno-miR-345 255 279 cGUGACCUGAUC-C---CCA--GUCGU | ||| ||:| | ||| ||||| tCCCTG--CTGGTGTTTGGTCCCAGCA Kctd3; rCG_20458 rno-miR-347 660 677 ACCCGCUGGGUCUCCCUgu ||||:| ::|| ||||| TGGGTG-TTCACAGGGAat Kctd3; rCG_20458 rno-miR-349 295 316 UCUCCAAUUCUGUCGUC-CCGac |||| |: || :|||| ||| AGAGCATGTGA-GGCAGCGGCcg Kctd3; rCG_20458 rno-miR-34c 688 718 CGUU--AGUCGAUUGA----U--GUGACgga || | ||||||| :| | ||||| GCTACTTCAGCTACTTTGGGAGCCACTGtgt Kctd3; rCG_20458 rno-miR-351 655 675 gUCCGAGUUUCCCG-AGGAGUCCCU || || |||: |:| |||||| aAGTCT----GGGTGTTCACAGGGA Kctd3; rCG_20458 rno-miR-381 978 996 cucucgaACGGGAACAUAu | ||||||||| acacaaaTTCCCTTGTATt Kctd3; rCG_20458 rno-miR-381 386 406 cuCUCGA--ACGGGAACAuau |:||| |||||||| atGGGCTCCAGCCCTTGTgat Kctd3; rCG_20458 rno-miR-421 292 309 guuguUUGUAAAUUACUCCGg |:||| :|||||| cttagAGCAT---GTGAGGCa Kctd3; rCG_20458 rno-miR-485 112 133 CUUAAGUAGUGCCGG-UCGGAga | :||: || |||| ||||| GTGTTT-TCTGGGCCGAGCCTgt Kctd3; rCG_20458 rno-miR-493 274 296 gacCGU-GUGUCAUC-UGGAAgu ||| |||||||| ||||| ccaGCACCACAGTAGTACCTTag Kctd3; rCG_20458 rno-miR-505 607 628 CCUUUGGUCGU--UCAC-AACUg ||:|| ||||: ||| |||| GGGAA-CAGCGTCTGTGTTTGAt Kctd3; rCG_20458 rno-miR-542-5p 893 916 gCACUGUACUAC---U-AGGGGcuc |||: |||||| | ||||| aGTGG-ATGATGTATATTCCCCatt Kctd3; rCG_20458 rno-miR-7 489 511 uuGUUUUA-GUGAU-CAGAAGGu || || ||||| ||||||| tcCACTATGCACTACGTCTTCCg Kctd3; rCG_20458 rno-miR-7b 489 511 uuGUUUUA-GUG-UUCAGAAGGu || || ||| | ||||||| tcCACTATGCACTACGTCTTCCg Kctd3; rCG_20458 rno-miR-92 139 168 GUC--CGGCCCUGUU-------CACGUUAu ||| || | | | | |||||:| CAGGAGCAGAGCCCACTCCCCGGTGCAGTg Kctd3; rCG_20458 rno-miR-98 675 696 uuguuauGUUGAAUGAUGGAGU | |:||:||||:||| aatctccCCATTTGCTACTTCA Kctd3; rCG_20458 rno-miR-99b 498 515 GCGUUCCAGCCAAGAUGCCCAC | | | ||| :| |||||| CACTACGTC----TTCCGGGTG Kctd3; rCG_20458 rno-miR-10b 88 95 U---------------------GUGUUUAAGCCAAGAUGUCCC :||| ||||||||| CUGGGUUUCAGUCAUUGGCUUUUACAUCAAAAACUCUACAGGGC Kctd3; rCG_20458 rno-miR-128a 711 718 UUUU-------------------------CUCUGGCCAAGUGACACU |:|| | ||||||| AUCUCCCCAUUUGCUACUUCAGCUACUUUGGGAGC----CACUGUGU Kctd3; rCG_20458 rno-miR-128b 711 718 CUUU-------------------------CUCUGGCCAAGUGACACU |:|| | ||||||| AUCUCCCCAUUUGCUACUUCAGCUACUUUGGGAGC----CACUGUGU Kctd3; rCG_20458 rno-miR-136 853 860 -AGGUAG--UAGUUU-----------------UGUUUACCUCA |:|||: ||||:| :||||||||| UUUCAUUUAAUCAGAAUGGUUUACAUAUUUCUGCAAAUGGAGA Kctd3; rCG_20458 rno-miR-200a 409 416 ----------UGUAGCAAUGGUC-----------UGUCACAAU |||| | |||| :||||||| UAGUCUUGGAACAUGGGCUCCAGCCCUUGUGAUUGCAGUGUUU Kctd3; rCG_20458 rno-miR-200a 578 585 UGU-AGCAAUGGUCU--------------------GUCACAAU |:|||: :|| ||||||| CUUCUUGUUGUUGGAGUCAAUAUAGCAUGCGUCCCCAGUGUUU Kctd3; rCG_20458 rno-miR-214 257 264 ------------------------GACGGACAGACACGGACGACA ||||| || ||||||| CAGUGUGUGAGCAGGAGUCUUGCCCUGCCGCCCUC--CCUGCUGG Kctd3; rCG_20458 rno-miR-31 239 246 ---------------GUCG--AUACGGUCG----UAGAACGGA |||| |:||: ||| :||||||| UGCAGGCACGUGUGACAGCAGUGUGUGAGCAGGAGUCUUGCCC Kctd3; rCG_20458 rno-miR-342 226 233 -----------------CUGCCCACGCUAAAG--ACACACUCU |:| |||:|| | |||||||| GUGGCUCUAGUCCUGCAGGCACGUGUGACAGCAGUGUGUGAGC Kctd3; rCG_20458 rno-miR-381 989 996 CUCUCGAAC------------------------GGGAACAUAU ||||||||| GUUUACUAUAUUGCCAGUGGUUUCACACAAAUUCCCUUGUAUU Kctd3; rCG_20458 rno-miR-7 504 511 U----------------------UGUUUUAGUGAU-CAGAAGGU || ||||| |||||||: ACUAUCAUUGGUCCGCGGGCUCCACUAUG-CACUACGUCUUCCGG Kctd3; rCG_20458 rno-miR-7b 504 511 U----------------------UGUUUUAGUGUU-CAGAAGGU || ||| |||||||: ACUAUCAUUGGUCCGCGGGCUCCACUAUG-CACUACGUCUUCCGG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Kctd3 RAID00021855 rno-miR-150-5p miRNA MIMAT0000853 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID01900692 rno-miR-29b-3p miRNA MIMAT0000801 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID02103172 rno-miR-471-5p miRNA MIMAT0005318 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID02237870 rno-miR-29c-3p miRNA MIMAT0000803 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID02303072 rno-miR-381-3p miRNA MIMAT0003199 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID02545150 rno-miR-294 miRNA MIMAT0012848 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID03022182 rno-miR-141-3p miRNA MIMAT0000846 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID03446316 rno-miR-539-3p miRNA MIMAT0017212 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID03529467 rno-miR-186-5p miRNA MIMAT0000863 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID03718410 rno-miR-29a-3p miRNA MIMAT0000802 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID03758330 rno-miR-200a-3p miRNA MIMAT0000874 Kctd3 mRNA 305055 Prediction 0.1828 Kctd3 RAID04011772 rno-miR-742-3p miRNA MIMAT0005333 Kctd3 mRNA 305055 Prediction 0.1828