DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000576 rno-miR-336 360605 Epn3 ucUGAUCUAUACCUUCCCACu :| | | || ||||||| ugGCGACACAU--AAGGGUGa 2 20 559 577 [rn4:10:83129956-83129974:-] 0.4906 144 7 -14.06 -0.5667 MIMAT0000599 rno-miR-349 360605 Epn3 ucuccaauucugucGUCCCGAc ||||||| gccaaacucugcucCAGGGCUg 2 9 1421 1442 [rn4:10:83129091-83129112:-] 0.5232 140 7 -17.84 -0.1666 MIMAT0000603 rno-miR-20a* 360605 Epn3 acauucacgagcaUUACGUCa ||||||| guuuaggaaaccaAAUGCAGa 2 9 1117 1137 [rn4:10:83129396-83129416:-] 0.5232 140 7 -8.79 -0.2741 MIMAT0000610 rno-miR-352 360605 Epn3 augauacguuGGAUGAUGAGa |:|||||||| acaggccuuuCUUACUACUCc 2 12 706 726 [rn4:10:83129807-83129827:-] 0.5232 151 7 -15.85 -0.1616 MIMAT0004717 rno-miR-29b-2* 360605 Epn3 gauucggugguacACUUUGGUc |||||||| cccugacagauccUGAAACCAa 2 10 77 98 [rn4:10:83130435-83130456:-] 0.4498 145 7 -12.74 -0.3031 MIMAT0004717 rno-miR-29b-2* 360605 Epn3 gauucggugguacaCUUUGGUc ||||||| auugcaggguuuagGAAACCAa 2 9 1109 1130 [rn4:10:83129403-83129424:-] 0.5232 140 7 -9.93 -0.5201 MIMAT0004738 rno-miR-199a-3p 360605 Epn3 auUGGUUACACGUCUGA-UGACa ||||| | :|||| |||| aaACCAAGCUAGGGACUGACUGc 2 21 92 114 [rn4:10:83130419-83130441:-] 0.4886 128 0 -17.71 -0.1957 MIMAT0004739 rno-miR-204* 360605 Epn3 uugcagggaaacgGAAGGGUCg |||||||| cuaaagguccaaaCUUCCCAGg 2 10 675 696 [rn4:10:83129837-83129858:-] 0.5232 145 7 -22.73 -0.2546 MIMAT0004743 rno-miR-300-5p 360605 Epn3 uguuuccuAUUGGAGAG-AAGUu || :||||| |||| ccuccuccUACUCUCUCAUUCAu 2 15 317 339 [rn4:10:83130194-83130216:-] 0.5273 122 0 -11.40 -0.1683 MIMAT0003175 rno-miR-543* 360605 Epn3 ucUUC-ACGUGGCGCU-UACAAa ||| |:|| |:|| ||||| ucAAGAGGUACAGUGACAUGUUc 2 20 750 772 [rn4:10:83129761-83129783:-] 0.5232 126 0 -15.15 -0.3336 MIMAT0003197 rno-miR-376a* 360605 Epn3 gagUAUCU-UCCUCUUAGAUGg ||| | | :|||||||| cuaAUAAAGACUGGAAUCUACg 2 19 141 162 [rn4:10:83130371-83130392:-] 0.5273 153 7 -13.13 -0.1271 MIMAT0005281 rno-miR-871 360605 Epn3 acacuggccgugGUUAGACUUAu ||:||||||| gaaacuccuugaCAGUCUGAAUu 2 12 245 267 [rn4:10:83130266-83130288:-] 0.5273 151 7 -15.44 -0.1170 MIMAT0005281 rno-miR-871 360605 Epn3 acaCUGGCCGUGGUUA-GACUUAu |:|| :||| || |||||| uaaGGCC-CUACCUAUGCUGAAUa 2 21 483 505 [rn4:10:83130028-83130050:-] 0.5273 126 6 -19.06 -0.4817 MIMAT0012831 rno-miR-544 360605 Epn3 cucGAACGAUUU---UUACGUCUUa :|| :|||| || |||||| uuuUUUUUUAAAGAUAAGGCAGAAg 2 20 641 665 [rn4:10:83129868-83129892:-] 0.5069 130 6 -11.21 -0.1113 MIMAT0012835 rno-miR-615 360605 Epn3 cuaGGCUCGUGGCC------CCUGGGGg ::|||||::|| ||||||| aagUUGAGCAUUGGAUCUGUGGACCCCu 2 20 53 80 [rn4:10:83130453-83130480:-] 0.4498 150 7 -32.81 -0.1226 MIMAT0012853 rno-miR-761 360605 Epn3 acacaGUCAAAGUGGGACGACg :| | |:| ||||||| gcaccUAUUAUUA-CCUGCUGa 2 18 220 240 [rn4:10:83130293-83130313:-] 0.5273 147 7 -15.26 -0.8585 MIMAT0000575 rno-miR-335 360605 Epn3 ugUAAAAAGCAAU-AACGAGAACu || | |||| | ||||||| uaAUGAGUGGUUAGUCGCUCUUGa 2 22 1464 1487 [rn4:10:83129046-83129069:-] 0.5234 156 7 -16.08 -0.2105 MIMAT0000581 rno-miR-338 360605 Epn3 aguuguuuuagugacUACGACCu ||||||| gcugucuuggacaaaAUGCUGGg 2 9 870 892 [rn4:10:83129641-83129663:-] 0.5232 140 7 -14.52 -0.1881 MIMAT0000596 rno-miR-346 360605 Epn3 ucuccGUCCGUGA---GUCCGUCUGu |||| || | ||||||| ggaccCAGGAUCUGACCUGGCAGACa 2 19 1190 1215 [rn4:10:83129318-83129343:-] 0.5232 149 7 -23.28 -0.2713 MIMAT0000777 rno-let-7e 360605 Epn3 uugauauguuGGAGGAUG-GAGu |||||||| ||| cuggugcccuCCUCCUACUCUCu 2 13 310 332 [rn4:10:83130201-83130223:-] 0.5273 124 0 -21.82 -0.1933 MIMAT0000782 rno-miR-10a-5p 360605 Epn3 guGUUUAAGCCUAGAUGU-CCCAu |||| :||| : ||| |||| caCAAAGCUGGAGUAACAUGGGUc 2 22 778 801 [rn4:10:83129732-83129755:-] 0.5232 129 0 -21.78 -0.2389 MIMAT0000787 rno-miR-18a 360605 Epn3 gauAGAC-GUGAUCUACGUGGAAu |:|| |:| ||||||||| uucUUUGACGCGCUAUGCACCUUa 2 21 401 424 [rn4:10:83130109-83130132:-] 0.5273 159 7 -22.38 -0.6470 MIMAT0000827 rno-miR-122 360605 Epn3 guuUGUGGUAACAGUG-UGAGGu | :|| || |:|| ||||| cacAGGCCUUUCUUACUACUCCu 2 20 705 727 [rn4:10:83129806-83129828:-] 0.5232 127 0 -15.98 -0.1988 MIMAT0000885 rno-miR-214 360605 Epn3 gacGGACAGACACGGACGACa ||| |: | ||||||| gcaCCUAUUAUUACCUGCUGa 2 19 220 240 [rn4:10:83130293-83130313:-] 0.5273 154 7 -16.65 -0.8851 MIMAT0000887 rno-miR-217 360605 Epn3 uaggucagucaaggacUACGUCAu ||||||| ccuaccuaugcugaauAUGCAGUg 2 9 489 512 [rn4:10:83130021-83130044:-] 0.5273 140 7 -13.82 -0.3374 MIMAT0001534 rno-miR-448 360605 Epn3 uacccuGUAGGAUGUAUACGUu :|| ||: ||||||| ccuaccUAUGCUGAAUAUGCAg 2 17 489 510 [rn4:10:83130023-83130044:-] 0.5273 156 7 -14.09 -0.2617 MIMAT0005284 rno-miR-874 360605 Epn3 agccAGGGAGCCCGGU-CCCGUc |:||| || || ||||| guccUUCCUAGGUACAUGGGCAg 2 19 1312 1334 [rn4:10:83129199-83129221:-] 0.5232 126 0 -26.98 -0.1086 MIMAT0005299 rno-miR-181d 360605 Epn3 uggguggcuguUGUUACU-UACAa |||:||| |||| uuucaagagguACAGUGACAUGUu 2 13 748 771 [rn4:10:83129762-83129785:-] 0.5232 120 0 -15.96 -0.1925 MIMAT0005335 rno-miR-758 360605 Epn3 ccaaucACCUGGUCCAGUGUUu || |:| ||||||| gugacaUGUUCUAAGUCACAAa 2 17 762 783 [rn4:10:83129750-83129771:-] 0.5232 152 7 -13.77 -0.6573

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055228 Epn3 Rattus norvegicus 360605

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Epn3 rno-miR-127 29 51 UCGGUUCGAG--UCUGCCUAGGCU ||| ||| :|:||||||| CGCCUC-CUCGAGGGCGGAUCCU- Epn3 rno-miR-133a 97 129 UGUCGA-CCA--ACUUC-------CCCUGGUU- |||| || ||| ||||:|:| -AAGCUAGGGACUGACUGCAUCUUGGGAUCGAG Epn3 rno-miR-133b 97 129 AUCGA-CCA--ACUUC-------CCCUGGUU- |||| || ||| ||||:|:| AAGCUAGGGACUGACUGCAUCUUGGGAUCGAG Epn3 rno-miR-151* 17 41 AUGA--UCUGACACUCGAGGAGCU- :| ||:| |||||||| CGCGCGAGGCCCCGC-CUCCUCGAG Epn3 rno-miR-18 88 122 AUAGACG------UGAUCU-------ACGUGGAAU- ||| :||||: ||||:|||: --CCUGAAACCAAGCUAGGGACUGACUGCAUCUUGG Epn3 rno-miR-199a 39 68 -CUUGUCCAUCA-----GACUUGUGACCC |::|:| :|||:||:||| AGGGCGGAUCCUGCAAGUUGAGCAUUGGA Epn3 rno-miR-24 46 63 GACAAGGACGACUUGACUCGGU |||||| :||||| ---AUCCUGCAAG-UUGAGCA- Epn3 rno-miR-324-3p 6 47 -GGUCGU-----CGUGGAC---------------CCCGUCACC :||||: ||:| | ||||:| UUCAGCGCCUGCGCGCGAGGCCCCGCCUCCUCGAGGGCGGA-- Epn3 rno-miR-327 24 43 -UGGGAGUACGG-GGAGUUCC- :||| ||| ||||:||| GGCCCC---GCCUCCUCGAGGG Epn3 rno-miR-346 21 49 UCUCCGUC-CGUGAG-----UCCGUCUGU ||||| || ||| :|||:||: CGAGGCCCCGC-CUCCUCGAGGGCGGAUC Epn3 rno-miR-347 39 70 ACCCGC-UGGGU-------CUC----CCUGU ||||| |:|| ||| |||: AGGGCGGAUCCUGCAAGUUGAGCAUUGGAUC Epn3 rno-miR-34a 92 116 UUGUUGG-UCGAUUCUG---UGACGGU |||| |||||:|: ||||| --AAACCAAGCUAGGGACUGACUGCA- Epn3 rno-miR-351 7 44 -GUC-CGA--GU---UUCCC-----GAGGAG-UCCCU ||| || |: :||| |||||| |||| UCAGCGCCUGCGCGCGAGGCCCCGCCUCCUCGAGGGC Epn3 rno-miR-363-5p 111 141 UUUAACGUAGCA--CUAG--------GUGGGC- |||||| |||| |:|||| ---CUGCAUCUUGGGAUCGAGGACUACGCCCGC Epn3 rno-miR-431 37 64 ACGUACUGCC--GGACGUUC----UGU- | |:||| |||||||| :|| CGAG-GGCGGAUCCUGCAAGUUGAGCAU Epn3 rno-miR-485 5 36 CUUAAGUAGUG----------CCGGU-CGGAGA |||| |:| |||| ||||| --CUUCAGCGCCUGCGCGCGAGGCCCCGCCUCC Epn3 rno-miR-540 64 85 GGUCCUAG----CUGGAGACUGGA ||||| |||| ||||| --UGGAUCUGUGGACCCCUGACA- Epn3 rno-miR-542-5p 23 42 GCACUGUACUACUAGGGGCUC- |:| |||:|||| --AGGCCCCGCC-UCCUCGAGG Epn3 rno-miR-127 29 51 uCGGUUCGAG--UCUGCCUAGGcu ||| ||| :|:||||||| cGCC-TCCTCGAGGGCGGATCCtg Epn3 rno-miR-127 49 72 ucgGUUCGAGUC-U-GCCUAGGCU ||||:| || | :|||||:| ctgCAAGTTGAGCATTGGATCTGT Epn3 rno-miR-133a 82 110 UGUC---GAC-CAACUUC---CCCUGGUU |||| ||| ||| |||||::| ACAGATCCTGAAACCAAGCTAGGGACTGA Epn3 rno-miR-133b 101 127 AUC---GACCAACUU---CCCCUGGUU ||| ||| || | ||||:|:| TAGGGACTGACTGCATCTTGGGATCGA Epn3 rno-miR-151* 19 39 auGAUCUGACACUCGAGGAGCU | ||:| | |||||||| cgCGAGGCCCCG-CCTCCTCGA Epn3 rno-miR-18 97 120 aUAGA--CGUGAUCUACGUGGAAu | || | |||: ||||:||| aAGCTAGGGACTGACTGCATCTTg Epn3 rno-miR-199a 46 67 cuuGUCCAUCAGACUUGUGACCc | | ||| |||:||:||| atcCTGCAAGT-TGAGCATTGGa Epn3 rno-miR-24 43 63 GACAAGGACGACUUGACUCGgu | | |||||| |::||||| CGGATCCTGC-AAGTTGAGCat Epn3 rno-miR-31 97 123 gUCGAU-----ACGGUCGUAGAACgga ||||| || | |||||||| aAGCTAGGGACTGACTGCATCTTGgga Epn3 rno-miR-324-3p 27 48 GGUCGUCGUGGA-C-CCCGUCacc || || | ||| | ||||:| CCCGC--CTCCTCGAGGGCGGatc Epn3 rno-miR-327 25 41 uGGGAGUACGG-GGAGUUCC ||| | ||| ||||:||| gCCC-C--GCCTCCTCGAGG Epn3 rno-miR-347 27 45 accCGCUGGGUCUCCCugu || ||: ||||| cccGCCTCCTCGAGGGcgg Epn3 rno-miR-34a 90 116 uugUUGG-UCGAU-UCUG--UGACGgu |||| ||||| :||| ||||| tgaAACCAAGCTAGGGACTGACTGCat Epn3 rno-miR-351 14 43 GUC-CGAGUUUC----CCGAGGAG-UCCCu | | || |:|:| | |||||| |||| CTGCGCGCGAGGCCCCGCCTCCTCGAGGGc Epn3 rno-miR-363-5p 116 139 uuuAACGUAGCACU--AGGUGGGC | | |||| |: | |:|||| tctTGGGATCGAGGACTACGCCCG Epn3 rno-miR-431 36 58 acgUACUGCC--GGACGUUCugu | |:||| |||||||| tcgAGGGCGGATCCTGCAAGttg Epn3 rno-miR-485 13 35 cuuaaguaGUGCC-GGUCGGAGa |: || || ||||| cctgcgcgCGAGGCCCCGCCTCc Epn3 rno-miR-540 62 85 gguCCUAG----CUGGAGACUGga ||||| |||| ||||| attGGATCTGTGGACCCCTGACag Epn3 rno-miR-542-5p 20 40 gcacuguacuacuAGGGGCUC |||:|||| gcgaggccccgccTCCTCGAG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Epn3 RAID00212931 rno-miR-29b-5p miRNA MIMAT0004717 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID00215451 rno-miR-3551-3p miRNA MIMAT0017810 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID00367150 rno-miR-10a-5p miRNA MIMAT0000782 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID00380998 rno-miR-1224 miRNA MIMAT0012827 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID00384113 rno-miR-1956-3p miRNA MIMAT0035736 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID00430947 rno-miR-761 miRNA MIMAT0012853 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID00641887 rno-miR-346 miRNA MIMAT0000596 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID00892299 rno-let-7e-5p miRNA MIMAT0000777 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID01009722 rno-miR-338-3p miRNA MIMAT0000581 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID01197453 rno-miR-758-3p miRNA MIMAT0005335 Epn3 mRNA 360605 Prediction 0.2202 Epn3 RAID01411979 rno-miR-6333 miRNA MIMAT0025074 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID01560592 rno-miR-448-3p miRNA MIMAT0001534 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID01666243 rno-miR-122-5p miRNA MIMAT0000827 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID01747891 rno-miR-18a-5p miRNA MIMAT0000787 Epn3 mRNA 360605 Prediction 0.2202 Epn3 RAID01904862 rno-miR-214-3p miRNA MIMAT0000885 Epn3 mRNA 360605 Prediction 0.2202 Epn3 RAID02663952 rno-miR-335 miRNA MIMAT0000575 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID02803517 rno-miR-336-5p miRNA MIMAT0000576 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID02957815 rno-miR-326-5p miRNA MIMAT0017028 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID03160046 rno-miR-874-3p miRNA MIMAT0005284 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID03284493 rno-miR-349 miRNA MIMAT0000599 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID03469254 rno-miR-181d-5p miRNA MIMAT0005299 Epn3 mRNA 360605 Prediction 0.1828 Epn3 RAID03481864 rno-miR-217-5p miRNA MIMAT0000887 Epn3 mRNA 360605 Prediction 0.2202 Epn3 RAID03503108 rno-miR-615 miRNA MIMAT0012835 Epn3 mRNA 360605 Prediction 0.1828