DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004740 rno-miR-218* 79227 Thoc6 gcgccacgaacuguCUUGGUAc ||||||| agauuuagaucuguGAACCAUa 2 9 120 141 [rn4:10:12933348-12933369:-] 0.5168 140 7 -9.14 -1.0678 MIMAT0005279 rno-miR-466c 79227 Thoc6 guacauguacguguGUAGUGu |||||| --------------CAUCACa 2 8 1 7 [rn4:10:12933482-12933488:-] 0.7316 120 6 -10.06 -0.2550 MIMAT0005333 rno-miR-742 79227 Thoc6 aaauggguuguaccaCCGAAAg |||||| caaaauaaaauuuuaGGCUUU- 2 8 165 185 [rn4:10:12933304-12933324:-] 0.5907 120 6 -8.61 -0.4792 MIMAT0000844 rno-miR-138 79227 Thoc6 gccggACUAAGUGUUGU-GGUCGa ||| ||:|||| ||||| aucugUGAACCAUAACAUCCAGCu 2 19 128 151 [rn4:10:12933338-12933361:-] 0.5168 134 0 -23.41 -1.1013 MIMAT0000886 rno-miR-216a 79227 Thoc6 aguGUC-AACGGUCGACUCUAAu ||| | |:: |||||||| ucuCAGACUCCUGUCUGAGAUUu 2 20 103 125 [rn4:10:12933364-12933386:-] 0.5079 154 7 -18.16 -0.2523 MIMAT0000903 rno-miR-320 79227 Thoc6 agcGGGAGAGUUGGGUCGAAAa || | | |:|||||||| gaaCCAUAAC-AUCCAGCUUUu 2 20 134 154 [rn4:10:12933335-12933355:-] 0.5347 153 7 -18.43 -0.8111 MIMAT0003179 rno-miR-542-3p 79227 Thoc6 aaagucAAUAGUUAGACAGUgu ||:|: |||||| cagcuuUUGUUUUCCUGUCAaa 3 17 147 168 [rn4:10:12933321-12933342:-] 0.5347 128 0 -11.21 -0.2110 MIMAT0005331 rno-miR-708 79227 Thoc6 ggGUCGAUCUAACAUUC-GAGGAa :|||| |: | | || ||||| cuUAGCUUGG-UCUCAGACUCCUg 2 22 93 115 [rn4:10:12933374-12933396:-] 0.5079 123 0 -17.20 -0.4461 MIMAT0005339 rno-miR-873 79227 Thoc6 uccucugaguguucAAGGACg |||||| auccagcuuuuguuUUCCUGu 2 8 144 164 [rn4:10:12933325-12933345:-] 0.5347 120 6 -10.51 -0.1033

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101369 Thoc6 Rattus norvegicus 79227

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Thoc6; Pdrp; wdr58 rno-miR-100 28 57 GUGUUCA---------AGCCUAGAUGCCCAA ||::|| |:|||| : |||| GACGGGUGUUUGUGUUUUGGAU--GGGGGUC Thoc6; Pdrp; wdr58 rno-miR-10a 3 37 -GUGUU------UAAG--CCUAGAUGU-CCCAU- ||||| |||| ||| ||: | ||||: UCACAAUCCUCCAUUCCAGGAGCUGGACGGGUGU Thoc6; Pdrp; wdr58 rno-miR-124a 74 99 -ACCGUAAG-UGGCGCACGGAAUU- |||| ||: :||| ||||: CUGGCCUGGAACUCUGUGGCUUAGC Thoc6; Pdrp; wdr58 rno-miR-138 137 153 CUAAGUGUUGU-GGUCGA- ||:|||| |||||| ---CCAUAACAUCCAGCUU Thoc6; Pdrp; wdr58 rno-miR-140* 74 94 -ACAGGCACCAAGAUGGGACACCAU || || ||| ||:|||||| CUGGCC-UGGA---ACUCUGUGGC- Thoc6; Pdrp; wdr58 rno-miR-145 14 32 UUCCCUAAGGACCCUUUUGACCUG- ||||| ||| :|||||| ----CAUUCCA-GGA--GCUGGACG Thoc6; Pdrp; wdr58 rno-miR-206 1 22 GGU-GUGUGAAGGAAUGUAAGGU- || |||| |||| ||||||| -CAUCACAA-UCCUC-CAUUCCAG Thoc6; Pdrp; wdr58 rno-miR-214 76 101 GACGGAC----AGACACGGA--CGACA ||||| |||||| || ||| -GGCCUGGAACUCUGUGGCUUAGCUU- Thoc6; Pdrp; wdr58 rno-miR-216 105 126 GUGUCAACGGUC-GACUCUAAU ||| || | |||||||| -UCAGACUCCUGUCUGAGAUUU Thoc6; Pdrp; wdr58 rno-miR-222 66 96 CUCUGGGUC--AUCGG-UCU----ACAUCGA- :||||| |:||| :|| |||:||| --AGCCCAGGCUGGCCUGGAACUCUGUGGCUU Thoc6; Pdrp; wdr58 rno-miR-224 79 97 AUUUGCCUUGGUGAUCACUGAAC :|||||: || |||:||| ---CUGGAACU-CU-GUGGCUUA Thoc6; Pdrp; wdr58 rno-miR-296 28 60 -UGUCCU--AACU-----CC--CCCCCGGGA- ||:|| ||| || |||||:|:| GACGGGUGUUUGUGUUUUGGAUGGGGGUCUUA Thoc6; Pdrp; wdr58 rno-miR-326 43 79 UGACCUCCUUCC------------CGGGUCU--CC- :|||| | || ||||||: || UUUGGAUGGGGGUCUUAUACUUUAGCCCAGGCUGGC Thoc6; Pdrp; wdr58 rno-miR-329 19 39 UUUUUCCAAUCGACCCA--CACAA- ||| |||||| ||||| ---CAGG--AGCUGGACGGGUGUUU Thoc6; Pdrp; wdr58 rno-miR-331 41 80 AAGAUCCUAUC---------------CGGGUCC--CCG- |:| ||||:| ||||||| ||| GUUUUGGAUGGGGGUCUUAUACUUUAGCCCAGGCUGGCC Thoc6; Pdrp; wdr58 rno-miR-336 20 37 UCUGAUCUAUACCUUCCCACU :|| |||| ||||| ----AGGAGCUGGACGGGUGU Thoc6; Pdrp; wdr58 rno-miR-337 13 31 UUUCCGUAGUAUA-UCCUCGACUU- ||| ||||||||:| -------CCAUUCCAGGAGCUGGAC Thoc6; Pdrp; wdr58 rno-miR-338 2 31 -AGUUGUUUUA--GUGA----CUACGACCU- || |||| ||: || |||||| AUC-ACAAUCCUCCAUUCCAGGA-GCUGGAC Thoc6; Pdrp; wdr58 rno-miR-339 21 56 ACUCGAG--GACCU-----------CCUGUCCCU- ||||| | || |||::|||: GGAGCUGGACGGGUGUUUGUGUUUUGGAUGGGGGU Thoc6; Pdrp; wdr58 rno-miR-340 19 35 CCGAUAUUUCAUUGACUCUGCCU- |:| |:||| |||||: ------CAGG-AGCUG-GACGGGU Thoc6; Pdrp; wdr58 rno-miR-344 52 106 UGCCAG--------------UCCGAA-------------ACCGAU-----CUAGU |||| ||||| ||||| |:|| -GGGUCUUAUACUUUAGCCCAGGCUGGCCUGGAACUCUGUGGCUUAGCUUGGUCU Thoc6; Pdrp; wdr58 rno-miR-350 25 50 CACUU--UCACAUACCCGAAACACUU ||:| :|||| || |:|||| || CUGGACGGGUGUUUGUGUUUUG-GAU Thoc6; Pdrp; wdr58 rno-miR-99a 18 36 GUGUUCUA-GCCUAGAUGCCCAA ||:|| :||| ||||| -CCAGGAGCUGGA----CGGGUG Thoc6; Pdrp; wdr58 rno-miR-99b 18 37 GCGUUC-CAGCCAAGAUGCCCAC- ||:| | :|| ||||||| -CCAGGAGCUGG----ACGGGUGU Thoc6; Pdrp; wdr58 rno-miR-100 4 35 GUGUU------CAAG--CCUAG--AUGCCCAa ||||| ||| ||| | |||||| CACAATCCTCCATTCCAGGAGCTGGACGGGTg Thoc6; Pdrp; wdr58 rno-miR-10a 4 35 GUGUU------UAAG--CCUAGA--UGUCCCAu ||||| |||| ||| || || |||| CACAATCCTCCATTCCAGGAGCTGGAC-GGGTg Thoc6; Pdrp; wdr58 rno-miR-124a 75 97 ACCGUAAGUGGCG-CACGGAAUu |||| | | | | ||| |||| TGGCCTGGAACTCTGTGGCTTAg Thoc6; Pdrp; wdr58 rno-miR-138 134 151 CUAAGUGUUGU-GGUCGA || ||:|||| |||||| GAACCATAACATCCAGCT Thoc6; Pdrp; wdr58 rno-miR-140* 75 94 ACAGGCACCAAGAUGGGACACCau || || ||| ||:|||||| TGGCC-TGG---AACTCTGTGGct Thoc6; Pdrp; wdr58 rno-miR-145 10 30 uucccUAAGGACCCUUUUGACCUG ||||| || |:|||||| cctccATTCCAGG---AGCTGGAC Thoc6; Pdrp; wdr58 rno-miR-214 95 120 gaCGGA-CAGACAC---GGAC-GACa ||:| |||| | |||| ||| taGCTTGGTCTCAGACTCCTGTCTGa Thoc6; Pdrp; wdr58 rno-miR-216 104 125 GUGUCAACGGUC-GACUCUAAu | ||| || | |||||||| CTCAGACTCCTGTCTGAGATTt Thoc6; Pdrp; wdr58 rno-miR-222 65 94 cUCUGGGUC--AUCGGUC-----UACAUCGA || ||||| |:||| | |||:||| tAG-CCCAGGCTGGCCTGGAACTCTGTGGCT Thoc6; Pdrp; wdr58 rno-miR-224 76 96 auuugCCUUGGUGAUCACUGAAc |||||: || |||:||| ggcctGGAACT-CT-GTGGCTTa Thoc6; Pdrp; wdr58 rno-miR-296 38 58 uguccuAACUCCCCCCCGGGA |||: |||||:|:| tgtgttTTGGATGGGGGTCTT Thoc6; Pdrp; wdr58 rno-miR-320 133 154 aagcGGGAGAGUUGGGUCGAAAA || | | |:||||||||| tgaaCCATAAC-ATCCAGCTTTT Thoc6; Pdrp; wdr58 rno-miR-329 16 39 uuuuUCCAAUCGA----CCCACACAa ||| |||| |||||| | ttccAGG--AGCTGGACGGGTGTTTg Thoc6; Pdrp; wdr58 rno-miR-331 57 78 AAGAUCCUAUCCGGGUCC--CCG || || || ||||||| ||| TTATACTTTA-GCCCAGGCTGGC Thoc6; Pdrp; wdr58 rno-miR-336 16 36 ucuGAUCUAUACCUUCCCACu | :|| |||| ||||| ttcCAGGAGCTGGACGGGTGt Thoc6; Pdrp; wdr58 rno-miR-337 6 29 uUUCCGUAGU-AUAUCCUCGACUU || | || | ||||||||:| cAATCCTCCATTCCAGGAGCTGGA Thoc6; Pdrp; wdr58 rno-miR-338 1 29 aGUUGUUUUA----GUGA---CUACGACCU || || ||| ||:| |: |||||| -CATCACAATCCTCCATTCCAGGAGCTGGA Thoc6; Pdrp; wdr58 rno-miR-339 12 35 acucgAGGACCU---CCUGUCCcu ||| ||| ||||:|| tccatTCCAGGAGCTGGACGGGtg Thoc6; Pdrp; wdr58 rno-miR-340 12 33 ccgauauuUCAUUGACUCUGCCu || |:||| ||||| tccattccAGGAGCTG-GACGGg Thoc6; Pdrp; wdr58 rno-miR-344 99 131 ugCC--AGUCCGA----A-AC-C--GAUCUAGu || |||| || | || | :|||||| ttGGTCTCAGACTCCTGTCTGAGATTTAGATCt Thoc6; Pdrp; wdr58 rno-miR-350 19 43 caCUUUCACAUACCCG-AAACACuu |:|: || | |||: |||||| caGGAGCTGGACGGGTGTTTGTGtt Thoc6; Pdrp; wdr58 rno-miR-99a 17 35 guGUUCUAGCCUAGAUGCCCAa ||:|| | |: |||||| tcCAGGAGCTGG---ACGGGTg Thoc6; Pdrp; wdr58 rno-miR-99b 17 35 gcGUUC-CAGCCAAGAUGCCCAC ||:| | :|| ||||||| tcCAGGAGCTGG----ACGGGTG Thoc6; Pdrp; wdr58 rno-miR-216 118 125 ---------------------GUGUCAACGGUC-GACUCUAAU | ||| || | |||||||| AACUCUGUGGCUUAGCUUGGUCUCAGACUCCUGUCUGAGAUUU Thoc6; Pdrp; wdr58 rno-miR-320 147 154 AAGCGGGAGAGU-------------------------UGGGUCGAAAA ||| || |:||||||||| -----CCUGUCUGAGAUUUAGAUCUGUGAACCAUAACAUCCAGCUUUUG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Thoc6 RAID00157317 rno-miR-138-5p miRNA MIMAT0000844 Thoc6 mRNA 79227 Prediction 0.1828 Thoc6 RAID00504572 rno-miR-542-3p miRNA MIMAT0003179 Thoc6 mRNA 79227 Prediction 0.1828 Thoc6 RAID00531565 rno-miR-873-5p miRNA MIMAT0005339 Thoc6 mRNA 79227 Prediction 0.1828 Thoc6 RAID00745431 rno-miR-218a-2-3p miRNA MIMAT0004740 Thoc6 mRNA 79227 Prediction 0.1828 Thoc6 RAID01673274 rno-miR-708-5p miRNA MIMAT0005331 Thoc6 mRNA 79227 Prediction 0.1828 Thoc6 RAID03709804 rno-miR-216a-5p miRNA MIMAT0000886 Thoc6 mRNA 79227 Prediction 0.1828 Thoc6 RAID03926019 rno-miR-320-3p miRNA MIMAT0000903 Thoc6 mRNA 79227 Prediction 0.1828