Ubxn4
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0004639rno-miR-325-3p304766Ubxn4aacUAUCCUCCACGAGUUAUUu ||| | || :|||| || uaaAUA-AAAGUUUUCAAAAAa220459479[rn4:13:40980442-40980462:+]0.60511210-4.85-0.1281
MIMAT0000561rno-miR-327304766Ubxn4uggGAGUACGGGGAGUUcc ||||| |||||| gcaCUCAUCAGCCUCAAaa317407425[rn4:13:40980390-40980408:+]0.60511360-14.56-0.1922
MIMAT0000607rno-miR-7a*304766Ubxn4uaccgucugacacuaAACAACa |||||| gccucaaaaaaaaucUUGUUGu28417438[rn4:13:40980400-40980421:+]0.60511206-5.87-0.3210
MIMAT0005445rno-miR-29b-1*304766Ubxn4uuUAGAUUUGGUGGUAUACUUu |||| | ::| |||| || uaAUCUUACUUA-AAUAUUAAa221442462[rn4:13:40980425-40980445:+]0.60511220-7.46-0.1325
MIMAT0004719rno-miR-30c-1*304766Ubxn4ccUCAUUUGUUGGGAGA--GGGUc | | |||:|||||| |||| agACUUCACAGCCCUCUAGCCCAg221252275[rn4:13:40980235-40980258:+]0.60511200-27.95-0.4528
MIMAT0004720rno-miR-30e*304766Ubxn4cgacauuugUAGGCUGACUUUc |||: ||| ||| uuguuucuaAUCUUACUUAAAu214435456[rn4:13:40980418-40980439:+]0.60511210-6.69-0.1423
MIMAT0004720rno-miR-30e*304766Ubxn4cgacauuuguaggcuGACUUUc |||||| guuaaguuguuuaacCUGAAAa28120141[rn4:13:40980103-40980124:+]0.60511206-8.88-0.1734
MIMAT0004722rno-miR-30d*304766Ubxn4cgucguuugUAGACUGACUUUc |||| ||| ||| uuguuucuaAUCUUACUUAAAu214435456[rn4:13:40980418-40980439:+]0.60511250-4.69-0.1423
MIMAT0004722rno-miR-30d*304766Ubxn4cgucguuuguagacuGACUUUc |||||| guuaaguuguuuaacCUGAAAa28120141[rn4:13:40980103-40980124:+]0.60511206-7.73-0.1734
MIMAT0000809rno-miR-30a*304766Ubxn4cgacguuugUAGGCUGACUUUc |||: ||| ||| uuguuucuaAUCUUACUUAAAu214435456[rn4:13:40980418-40980439:+]0.60511210-5.90-0.1423
MIMAT0000809rno-miR-30a*304766Ubxn4cgacguuuguaggcuGACUUUc |||||| guuaaguuguuuaacCUGAAAa28120141[rn4:13:40980103-40980124:+]0.60511206-8.09-0.1734
MIMAT0004726rno-miR-101a*304766Ubxn4cgUAGUCGUGACACUAUUGACu ||||| |||||||||| uaAUCAG----GUGAUAACUGa221371388[rn4:13:40980354-40980371:+]0.60511597-21.23-0.4456
MIMAT0003204rno-miR-409-5p304766Ubxn4guuucaacgAGCCCAUUGGa | |||||||| ucuaaucaaUAGGGUAACCa212178197[rn4:13:40980161-40980180:+]0.60511477-13.78-0.9205
MIMAT0005282rno-miR-872304766Ubxn4ggACUUGAUU--GUUCAUUGGAa |||::||| :: |||||| ugUGAGUUAAGUUGUUUAACCUg220115137[rn4:13:40980098-40980120:+]0.60511266-11.24-0.1121
MIMAT0005286rno-miR-878304766Ubxn4agaUGGGUCAU--ACC--ACAGU-ACg || ||||| ||| ||||| || gccACACAGUAAUUGGUAUGUCACUGa220314340[rn4:13:40980297-40980323:+]0.60511250-16.04-0.7550
MIMAT0005287rno-miR-879304766Ubxn4ccGAAUCUCGA-UAUUCGGAGa ||| | || || |||||| cuCUUUGCACUCAUCAGCCUCa220401422[rn4:13:40980384-40980405:+]0.60511306-11.83-0.2744
MIMAT0012825rno-miR-105304766Ubxn4ugguGUCUGUAGACUCGUGAAc | || | |||||||| uaguCUGAGCCCCGAGCACUUa219342363[rn4:13:40980325-40980346:+]0.60511507-13.06-0.3581
MIMAT0012825rno-miR-105304766Ubxn4uggugUCU-GUAGACUCGUGAAc :|| | || ||||||| cuuuaGGAUCCACUCAGCACUUu2182850[rn4:13:40980011-40980033:+]0.61651487-12.53-0.2132
MIMAT0001619rno-miR-322304766Ubxn4agGUUUUGUACUUAACGACGac :|::||| ||||||| uuUAGGACACUUUUUGCUGCaa321283304[rn4:13:40980266-40980287:+]0.60511360-15.77-0.1062
MIMAT0000552rno-miR-301a304766Ubxn4cgAAACUGUUAUGA-UAACGUGAc ||| :|: | || ||||||| ugUUUAGCGUUUCUCUUUGCACUc222389412[rn4:13:40980372-40980395:+]0.60511567-11.46-0.8803
MIMAT0000573rno-miR-140304766Ubxn4gauGGUAUCCCAUUUUGGU-GAc | ||||||| ||||| || aauCAAUAGGGU--AACCAGCUg220181201[rn4:13:40980164-40980184:+]0.60511280-22.84-0.5075
MIMAT0000600rno-miR-129304766Ubxn4cguucgGGUCUGGCGUUUUUc :||| || |||||| cacucaUCAG-CCUCAAAAAa216408427[rn4:13:40980391-40980410:+]0.60511256-11.20-0.1432
MIMAT0000600rno-miR-129304766Ubxn4cguucgggucuggcGUUUUUc |||||| uaaauaaaaguuuuCAAAAAa28459479[rn4:13:40980442-40980462:+]0.60511206-4.62-0.6381
MIMAT0000602rno-miR-20a304766Ubxn4gauggACGUGAUAUUCGUGAAAu | ||| | |||||||| uaggaUCCAC--UCAGCACUUUu2193151[rn4:13:40980014-40980034:+]0.61081517-14.32-0.4229
MIMAT0000602rno-miR-20a304766Ubxn4gaugGACGUGAUAUUC-GUGAAAu :| ||:| ||:| |||||| agcgUUUCAUU-UAGGACACUUUu220274296[rn4:13:40980257-40980279:+]0.60511256-12.38-0.6241
MIMAT0000784rno-miR-15b304766Ubxn4acAUUUGGUACUACACGACGau ||:: || | |||||| uuUAGGACACUUUUUGCUGCaa321283304[rn4:13:40980266-40980287:+]0.60511320-9.15-0.1072
MIMAT0000785rno-miR-16304766Ubxn4gcggUUAUAAAUGCACGACGau :| | || : |||||| uuagGACACUU-UUUGCUGCaa319284304[rn4:13:40980267-40980287:+]0.60511240-8.13-0.1062
MIMAT0000786rno-miR-17-5p304766Ubxn4gauggACGUGACAUUCGUGAAAc | ||| | |||||||| uaggaUCCAC--UCAGCACUUUu2193151[rn4:13:40980014-40980034:+]0.61081517-13.39-0.4229
MIMAT0000786rno-miR-17-5p304766Ubxn4gaugGACGUGACAUUC-GUGAAAc :| ||:| ||:| |||||| agcgUUUCAUU-UAGGACACUUUu220274296[rn4:13:40980257-40980279:+]0.60511256-10.79-0.6241
MIMAT0000788rno-miR-19b304766Ubxn4aguCAAAACGU--ACCUAAACGUGu |||| ||: | ||||||| gauGUUUAGCGUUUCUCUUUGCACu221387411[rn4:13:40980370-40980394:+]0.60511517-13.07-0.5010
MIMAT0000789rno-miR-19a304766Ubxn4aguCAAAACGU--AUCUAAACGUGu |||| ||: | ||||||| gauGUUUAGCGUUUCUCUUUGCACu221387411[rn4:13:40980370-40980394:+]0.60511517-13.77-0.5010
MIMAT0000794rno-miR-24304766Ubxn4gaCAAGGAC-GACUUGACUCGGu || ||| | : ||||||| auGUCACUGAGUAGUCUGAGCCc221331353[rn4:13:40980314-40980336:+]0.60511477-19.86-0.3788
MIMAT0000817rno-miR-93304766Ubxn4gauggACGUGCUUGUCGUGAAAc | ||| ||||||||| uaggaUCCAC--UCAGCACUUUu2193151[rn4:13:40980014-40980034:+]0.61081517-15.38-0.4293
MIMAT0000824rno-miR-103304766Ubxn4aguaucgggacauguuACGACGa |||||| cauuuaggacacuuuuUGCUGCa28281303[rn4:13:40980264-40980286:+]0.60511206-8.90-0.1450
MIMAT0000825rno-miR-106b304766Ubxn4uagACGUGACAGUCGUGAAAu | ||| |||||||||| ggaUCCAC--UCAGCACUUUu2193351[rn4:13:40980016-40980034:+]0.61081597-17.31-0.4229
MIMAT0000826rno-miR-107304766Ubxn4acuaucgggacauguuACGACGa |||||| cauuuaggacacuuuuUGCUGCa28281303[rn4:13:40980264-40980286:+]0.60511206-8.90-0.1450
MIMAT0000836rno-miR-130a304766Ubxn4uacggGAAAAUUGUAACGUGAc | ||| | ||||||| uuuagCGUUUCUCUUUGCACUc218391412[rn4:13:40980374-40980395:+]0.60511537-11.56-0.8700
MIMAT0000837rno-miR-130b304766Ubxn4uacgGGAAAGUAGUAACGUGAc | |||| || ||||||| uuagCGUUUC-UCUUUGCACUc219392412[rn4:13:40980375-40980395:+]0.60511607-14.68-0.8665
MIMAT0000844rno-miR-138304766Ubxn4gcCGGACUAAGUGUU--GUG-GUCGa ||:| ||:| :| ||| |||| cuGCUUCCUUUAGGAUCCACUCAGCa2222146[rn4:13:40980004-40980029:+]0.61651200-12.68-0.3085
MIMAT0000852rno-miR-146a304766Ubxn4uuggGUACCUUA-AGUCAAGAGu :|| ||| ||||:|| uaaaUAUUAAAUAAAAGUUUUCa219452474[rn4:13:40980435-40980457:+]0.60511290-9.78-0.2978
MIMAT0000854rno-miR-152304766Ubxn4gguUCA-AGACAGUAC-GUGACu ||| :|| :||| ||||| cacAGUAAUUGGUAUGUCACUGa219318340[rn4:13:40980301-40980323:+]0.60511210-17.12-0.7587
MIMAT0000856rno-miR-154304766Ubxn4gcUUCCGUUGUGCCUAUUGGAu :|| :|| :| |||||| guGAGUUAAGUUGUUUAACCUg221116137[rn4:13:40980099-40980120:+]0.60511246-12.88-0.1132
MIMAT0000895rno-miR-291a-3p304766Ubxn4ccguguguuucaccUUCGUGAAa :||||||| guagucugagccccGAGCACUUa210341363[rn4:13:40980324-40980346:+]0.60511417-10.26-0.3581
MIMAT0000895rno-miR-291a-3p304766Ubxn4ccguguguuucaccuUCGUGAAa ||||||| cuuuaggauccacucAGCACUUu292850[rn4:13:40980011-40980033:+]0.61651407-12.65-0.2171
MIMAT0003193rno-miR-494304766Ubxn4uccaaAGGGCACAUACAAAGu ||: | |||||||| gugggUCUGCUCUAUGUUUCc2176383[rn4:13:40980046-40980066:+]0.60511527-14.20-0.5905
MIMAT0003193rno-miR-494304766Ubxn4uccaaagggcacauACAAAGu |||||| aaaaaaaaucuuguUGUUUCu28422442[rn4:13:40980405-40980425:+]0.60511206-10.52-0.2098
MIMAT0003194rno-miR-376c304766Ubxn4ugCACUUUAAAGGAGAUACAa ||| ::| | |||||||| aaGUG-GGUCUGCUCUAUGUu2206180[rn4:13:40980044-40980063:+]0.60511577-17.98-0.2931
MIMAT0003203rno-miR-485304766Ubxn4cuuAAGUAGUG-CCGGUCGGAGa ||:: ||| :||||||| cucUUUG-CACUCAUCAGCCUCa220401422[rn4:13:40980384-40980405:+]0.60511447-17.39-1.2593
MIMAT0003211rno-miR-20b-5p304766Ubxn4uggACGUGAUACUCGUGAAAc | ||| | |||||||| ggaUCCAC--UCAGCACUUUu2193351[rn4:13:40980016-40980034:+]0.61081517-13.14-0.4229
MIMAT0003213rno-miR-503304766Ubxn4gacguCAUGACAAGGGCGACGAu |||| | ||||||||| ggaguGUACGCUCCCCGCUGCUu219426[rn4:13:40979987-40980009:+]0.68581667-25.57-0.7728
MIMAT0003383rno-miR-497304766Ubxn4auGUUUGGUGUCACACGACGac :|:: ||| | |||||| uuUAGGACACUUUUUGCUGCaa321283304[rn4:13:40980266-40980287:+]0.60511360-13.20-0.1062
MIMAT0005304rno-miR-301b304766Ubxn4cgAAACUGUUAUG-GUAACGUGAc ||| :|: | | | ||||||| ugUUUAGCGUUUCUCUUUGCACUc222389412[rn4:13:40980372-40980395:+]0.60511567-11.33-0.8803
MIMAT0005595rno-miR-146b304766Ubxn4ugucggAUACCUUA-AGUCAAGAGu ||| ||| ||||:|| cuuaaaUAUUAAAUAAAAGUUUUCa219450474[rn4:13:40980433-40980457:+]0.60511330-9.46-0.2978
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G101600Ubxn4Rattus norvegicus304766
DNA & RNA Element - miRNAMap
Gene NameMature miRNATarget StartTarget EndmiRNA 3-5AlignmentTarget 5-3
Ubxn4; Ubxd2; Ubxdc1rno-let-7a590611UUGAUAUGUUGGA----UGAUGGAGU |||||: |||:|||:-----AACAACUGACUGACUGCCUUU
Ubxn4; Ubxd2; Ubxdc1rno-let-7i583611UGUCGUGU------UUGA-UGAUGGAGU ||||| :||| |||:|||:UCAGCAAAACAACUGACUGACUGCCUUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-101a510534-GAAGU-CAAUAGUGUCAUGACAU- |||: |||:| |||| :|||||UCUUUUUGUUGU-ACAGGGCUGUAC
Ubxn4; Ubxd2; Ubxdc1rno-miR-101b510534-GAAGU-CGAUAGUGUCAUGACAU- |||: |:|:| |||| :|||||UCUUUUUGUUGU-ACAGGGCUGUAC
Ubxn4; Ubxd2; Ubxdc1rno-miR-10a149195-GUGUUUAA---GCCU-------------AGA-----UGUCCCAU ||::|| :||| ||| |:||||||ACAUGAAGUAGCUGGAUGCUAGGUCCUUGUCUAAUCAAUAGGGUAA
Ubxn4; Ubxd2; Ubxdc1rno-miR-10b506529-UGUGUUUAAGCCAAGAUGUCCC- :||: ||: ||| |||||||AGCAUCU-UUUUGUUGUACAGGGC
Ubxn4; Ubxd2; Ubxdc1rno-miR-128a320341UUUUCUCUGGCCA---AGUGACACU || |::||| ||||||--CAGUAAUUGGUAUGUCACUGA--
Ubxn4; Ubxd2; Ubxdc1rno-miR-128b320341CUUUCUCUGGCCA---AGUGACACU || |::||| ||||||--CAGUAAUUGGUAUGUCACUGA--
Ubxn4; Ubxd2; Ubxdc1rno-miR-129*510531UACGAAAAACCCCAU-UCCCGAA ||||||| ||| ||||||--UCUUUUUGUUGUACAGGGCUG
Ubxn4; Ubxd2; Ubxdc1rno-miR-130a377413-UACG---GGA---AAAUUGUA-------ACGUGAC :|| |: ||||:|:| ||||||GGUGAUAACUGAUGUUUAGCGUUUCUCUUUGCACUC
Ubxn4; Ubxd2; Ubxdc1rno-miR-1342549-GGGAGA-CC-AGUUG-GUCAGUGU :|||:| || || || ||| |||UUCCUUUAGGAUCCACUCAG-CACU
Ubxn4; Ubxd2; Ubxdc1rno-miR-140181205GAUGG-UAUCCCAUU--UUGGUGA- |:| ||||||||| |:|::||-AAUCAAUAGGGUAACCAGCUGCUC
Ubxn4; Ubxd2; Ubxdc1rno-miR-192525543-CCGACAGUUAAGUAUCCAGUC |||||| | ||||||GGGCUGUA----CCGAGGUCAC
Ubxn4; Ubxd2; Ubxdc1rno-miR-196a582610-GGUUGU--UGU--ACU--UUGAUGGAU :||:|| ||| ||| :|||:|||GUCAGCAAAACAACUGACUGACUGCCUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-196b589610GGUUGUUGUCCU-UUGAUGGAU |||||| | :|||:|||-AAACAACUGACUGACUGCCUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-19a389412AGUCAAAACGUAUCU--AAACGUGU |||| ||:| |||||||--UGUUUAGCGUUUCUCUUUGCACU
Ubxn4; Ubxd2; Ubxdc1rno-miR-19b389412AGUCAAAACGUACCU--AAACGUGU |||| ||:| |||||||--UGUUUAGCGUUUCUCUUUGCACU
Ubxn4; Ubxd2; Ubxdc1rno-miR-20b344364UGGACGUGAUACUCGUGAAAC :||| :| ||||||||GUCUGAGCCCCGAGCACUUA-
Ubxn4; Ubxd2; Ubxdc1rno-miR-214568603-GAC-GGAC--AGACA--CG-------GAC-GACA ||| |||| ||||| || ||| |||GCUGCCCUGAUUCUGUCAGCAAAACAACUGACUGA
Ubxn4; Ubxd2; Ubxdc1rno-miR-222145172CUCUGGG---UCAUCGGUCUAC-AUCGA ||| | ||||||::|||| |||CAGAACAUGAAGUAGCUGGAUGCUAGG-
Ubxn4; Ubxd2; Ubxdc1rno-miR-292-3p4372-UGUGAGUUU-UGGAC----CGCCGUGAA :||||: :|: |:|| ||AGCACUUUUCUGCUGGGGAAGUGGGUCUG
Ubxn4; Ubxd2; Ubxdc1rno-miR-298251274CCUUCU----UGUCGGGAGGAGACGG- ||| |||||||||: |||--CAGACUUCACAGCCCUCUA--GCCC
Ubxn4; Ubxd2; Ubxdc1rno-miR-29c*4271CUUGUGGU-------CCUCUUUAGCCAGU |:|||: ||:|||:| ||||CAGCACUUUUCUGCUGGGGAAGUGGGUCU
Ubxn4; Ubxd2; Ubxdc1rno-miR-30b5386UCGACUCA--CAUCC--------UACAAAUGU- ||||:| ||:|| |||||| ||UGCUGGGGAAGUGGGUCUGCUCUAUGUUUCCAG
Ubxn4; Ubxd2; Ubxdc1rno-miR-30c5386-CGACUCUCACAUCC--------UACAAAUGU- ||||:|: ||:|| |||||| ||UGCUGGGGAAGUGGGUCUGCUCUAUGUUUCCAG
Ubxn4; Ubxd2; Ubxdc1rno-miR-31156182-GUCGA--UACGGUCGUAGAACGGA- :|||| ||||:|| ||||:||GUAGCUGGAUGCUAGGUCCUUGUCUA
Ubxn4; Ubxd2; Ubxdc1rno-miR-320261278AAGCGGGAGAGUUGGGUCGAAAA ||||||| |:||||||--AGCCCUCU-AGCCCAGCG---
Ubxn4; Ubxd2; Ubxdc1rno-miR-324-3p4068-GGUCGUC----GUGGACCCCGUCACC- :||||| | |||||| |||||CUCAGCACUUUUCUGCUGGGGAAGUGGG
Ubxn4; Ubxd2; Ubxdc1rno-miR-324-5p4367-UGUGGUU--ACGGGAUCCCCUACGC- :|||: |||: ||||| |:|AGCACUUUUCUGCU---GGGGAAGUGG
Ubxn4; Ubxd2; Ubxdc1rno-miR-3252261UGUGAA------------UGACUCGUG----GAUGAUCC- :||| ||| ||||| ||:||:||-UGCUUCCUUUAGGAUCCACUCAGCACUUUUCUGCUGGGG
Ubxn4; Ubxd2; Ubxdc1rno-miR-327261290-UGGGAGUACGGGG-----AGU---UCC- :||||| |||| ||| |||AGCCCUCUAGCCCAGCGUUUCAUUUAGGA
Ubxn4; Ubxd2; Ubxdc1rno-miR-337139166-UUUCCGUA--GUAUAUCCUCGACUU- |||| || |||: || |||||:|AAAAGUCAGAACAUGAAGUAGCUGGAU
Ubxn4; Ubxd2; Ubxdc1rno-miR-3455374CGUGACCUGAUC-CCCAGUCGU :||||: || ||||| ||-UGCUGGGGAAGUGGGUCUGCU
Ubxn4; Ubxd2; Ubxdc1rno-miR-349516532UCUCCAAUUCUGUCGUCCCGAC- |||: ||||||||---UGUUGUA----CAGGGCUGU
Ubxn4; Ubxd2; Ubxdc1rno-miR-34a191230UUGUUGGUCGAU-----------UCUG------UGACGGU :||||||||: ||| :|||||-GUAACCAGCUGCUCAGCCUAAAAGAAGCCAAGGCUGCCC
Ubxn4; Ubxd2; Ubxdc1rno-miR-34b581610GUUAGUCGAUUAA-----UG--UGACGGAU :||||| || |||||||-UGUCAGCAAAACAACUGACUGACUGCCUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-34c581610CGUUAGUCG--------AUUGAUGUGACGGA- :||||| |:|||: |||||||--UGUCAGCAAAACAACUGACUG-ACUGCCUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-351167208-GUCCG----------AGUU-UCCCG-------AGGAGUCCCU :|||: |||| ||||: | |||||CUAGGUCCUUGUCUAAUCAAUAGGGUAACCAGCUGCUCAGC--
Ubxn4; Ubxd2; Ubxdc1rno-miR-352190206AUGAUACGUUGGAUGAUGAGA |:|||| :||:|||-----GGUAACCAGCUGCUCA
Ubxn4; Ubxd2; Ubxdc1rno-miR-363-5p2144UUUAACGUAGCA----CUAGGUGGGC ||| || |||||||:|---CUGCUUCCUUUAGGAUCCACUCA
Ubxn4; Ubxd2; Ubxdc1rno-miR-376b6180-UCACCUACAAGGAGAUACUA |||||:| | |||||||AAGUGGGUC-UGCUCUAUGU-
Ubxn4; Ubxd2; Ubxdc1rno-miR-376c6282GCACUUUAAAGGAGAUACAA- |||:: | |||||||||AGUGGGUC-UGCUCUAUGUUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-381161183CUCU-CGAA-CGGGAACAUAU- :|| ||| |:|||||| ||UGGAUGCUAGGUCCUUGUCUAA
Ubxn4; Ubxd2; Ubxdc1rno-miR-409-5p168198GUUUCA---AC-GAG-------CCCAUUGGA |:|| || || ||||||||-UAGGUCCUUGUCUAAUCAAUAGGGUAACCA
Ubxn4; Ubxd2; Ubxdc1rno-miR-412364383-UGC-CGAUCACCUGGUCCACUUCA :|| |||| |:|||||||AGCGAGCUA----AUCAGGUGAU--
Ubxn4; Ubxd2; Ubxdc1rno-miR-449193230-UGGUCGAU---------------UGUUAUGUGACGGU |||||||: :| | :|||||AACCAGCUGCUCAGCCUAAAAGAAGCCA-AGGCUGCCC
Ubxn4; Ubxd2; Ubxdc1rno-miR-485401423CUUAAGUA--GUGCC-GGUCGGAGA || ||| :|||||||---CUCUUUGCACUCAUCAGCCUCA
Ubxn4; Ubxd2; Ubxdc1rno-miR-4946484-UCCAAA-GGGCACAUACAAAGU :||| |:| ||||||||UGGGUCUGCUC---UAUGUUUCC
Ubxn4; Ubxd2; Ubxdc1rno-miR-499330349UUUGUAGUGACGU-UCAGAAUU |::|||||| |||||-UAUGUCACUGAGUAGUCUG--
Ubxn4; Ubxd2; Ubxdc1rno-miR-503827GUCAUGACAAGGGCGACGAU |||| |||||||||-UGUACGCUCCCCGCUGCUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-542-3p319339AAGUCAAUAGUUAGACAGUGU |||| ||: | ||||||-ACAGUAAUUGGUAUGUCACU
Ubxn4; Ubxd2; Ubxdc1rno-miR-542-5p331359-GCACUGUACU------ACUAGGGGCUC- :|| || ||| ||| |||||||AUGUCAC-UGAGUAGUCUGAGCCCCGAGC
Ubxn4; Ubxd2; Ubxdc1rno-miR-932352-GAUGGACGUGCUU-----GUCGUGAAAC || ||| :| || |||||||||GCUUCCUUUAGGAUCCACUCAGCACUUUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-98584611-UUGUUAUGUUGAA----UGAUGGAGU |:||| |||||| |||:|||:CAGCAAAACAACUGACUGACUGCCUUU
Ubxn4; Ubxd2; Ubxdc1rno-let-7a585610UUGAUAUGUUG---GA-UGAUGGAgu|:| | ||||| || |||:|||AGCAAAACAACTGACTGACTGCCTtt
Ubxn4; Ubxd2; Ubxdc1rno-miR-101a512532gAAGUCAAUAGUGUCAUGACAU ||: |||:| |||| :|||||tTTTTGTTGT-ACAGGGCTGTA
Ubxn4; Ubxd2; Ubxdc1rno-miR-101b512532gAAGUCGAUAGUGUCAUGACAU ||: |:|:| |||| :|||||tTTTTGTTGT-ACAGGGCTGTA
Ubxn4; Ubxd2; Ubxdc1rno-miR-106b3551UAGACGUGACAGUCGUGAAAu||| ||| ||||||||||ATC--CAC--TCAGCACTTTt
Ubxn4; Ubxd2; Ubxdc1rno-miR-10a171193guguuuaAGCCUAGAUGUCCCAU || ||| |:||||||gtccttgTCTAATCAATAGGGTA
Ubxn4; Ubxd2; Ubxdc1rno-miR-128a318342uUUUCUCUGGCCA---AGUGACACu | || |::||| |||||| |cACAGTAATTGGTATGTCACTGAGt
Ubxn4; Ubxd2; Ubxdc1rno-miR-128b318342cUUUCUCUGGCCA---AGUGACACu | || |::||| |||||| |cACAGTAATTGGTATGTCACTGAGt
Ubxn4; Ubxd2; Ubxdc1rno-miR-129*508530uacGAAAAACCCCAU-UCCCGAa ||||||| ||| ||||||catCTTTTTGTTGTACAGGGCTg
Ubxn4; Ubxd2; Ubxdc1rno-miR-130b392412uacgGGAAAGUAGUAACGUGAc | |||| || |||||||ttagCGTTTC-TCTTTGCACTc
Ubxn4; Ubxd2; Ubxdc1rno-miR-1342748GGGAGACC-AGUUG-GUCAGUGu||:|: || || || ||| |||CCTTTAGGATCCACTCAG-CACt
Ubxn4; Ubxd2; Ubxdc1rno-miR-140179199GAU--GGUAUCCCAUUUUGGUga||| | ||||||| |||||CTAATCAATAGGGT--AACCAgc
Ubxn4; Ubxd2; Ubxdc1rno-miR-172351uGAUGGA----C---GUGACAUUCGUGAAAc || ||| | ||| | ||||||||gCTTCCTTTAGGATCCAC--TCAGCACTTTt
Ubxn4; Ubxd2; Ubxdc1rno-miR-192526542CCGACAGUUAAGUAUCCAGUc|||||| | | ||||||GGCTGT--A--CCGAGGTCAc
Ubxn4; Ubxd2; Ubxdc1rno-miR-196a588609ggUUGUUGUACU--UUGAUGGAu |||||| ||| :|||:|||aaAACAAC-TGACTGACTGCCTt
Ubxn4; Ubxd2; Ubxdc1rno-miR-196b588609ggUUGUUGUC-CUUUGAUGGAu |||||| | :|||:|||aaAACAACTGACTGACTGCCTt
Ubxn4; Ubxd2; Ubxdc1rno-miR-20a2451GAUGGA---CGU-GAU-AUUCGUGAAAu|| ||| | | | | | ||||||||CTTCCTTTAGGATCCACTCAGCACTTTt
Ubxn4; Ubxd2; Ubxdc1rno-miR-20b344364ugGACGUGAUACUCGUGAAac ||| :| ||||||||gtCTGAGCCCCGAGCACTTaa
Ubxn4; Ubxd2; Ubxdc1rno-miR-214560583GACGGACA-GACACGGAC---GACA|| || || ||| |||| ||||CTCCCAGTGCTG-CCCTGATTCTGT
Ubxn4; Ubxd2; Ubxdc1rno-miR-222139161cUCUGGGUCAUCGGUCUACAUCGA | | :||| | | || ||||||aAAAGTCAG-AACATGAAGTAGCT
Ubxn4; Ubxd2; Ubxdc1rno-miR-24331353gACAAGGAC-GACUUGACUCGGu ||| ||| | : |||||||aTGTCACTGAGTAGTCTGAGCCc
Ubxn4; Ubxd2; Ubxdc1rno-miR-291-3p328363CCGU---GUGUUUCA-C---CU------UCGUGAAa||:| ||| :||| | || |||||||GGTATGTCACTGAGTAGTCTGAGCCCCGAGCACTTa
Ubxn4; Ubxd2; Ubxdc1rno-miR-292-3p2649uGUGAGUUUU-GGACCGCCGUGAA | :|:|::| || | ||||||tCCTTTAGGATCCACTCAGCACTT
Ubxn4; Ubxd2; Ubxdc1rno-miR-298253272ccuucuUGUCGGGAGGAGA-CGG ||||| ||||| |||gacttcACAGC---CCTCTAGCC
Ubxn4; Ubxd2; Ubxdc1rno-miR-29c*4970cuugugGUCCUCUUUAGCCAGu | ||:|||:| ||||tttctgCTGGGGAAGTGGGTCt
Ubxn4; Ubxd2; Ubxdc1rno-miR-30c5484CGACUCUCACAUCC--------UACAAAUGU||||:|: ||:|| |||||| ||GCTGGGGAAGTGGGTCTGCTCTATGTTTCCA
Ubxn4; Ubxd2; Ubxdc1rno-miR-31157180gUCGA--UACGGUCGUAGAACGGA |||| ||||:|| ||||:||tAGCTGGATGCTAGGTCCTTGTCT
Ubxn4; Ubxd2; Ubxdc1rno-miR-320256280AAG---CGGGAGAGUUGGGUCGAAAA||| ||||||| |:|||||| |||TTCACAGCCCTCT-AGCCCAGCGTTT
Ubxn4; Ubxd2; Ubxdc1rno-miR-324-3p3766GGU-CGUCGUG-------GACCCCGUCACC||| |||||| |||||| |||||CCACTCAGCACTTTTCTGCTGGGGAAGTGG
Ubxn4; Ubxd2; Ubxdc1rno-miR-324-5p4165uGUGGUUACGGGAU--CCCCUACGC || || | ::||: ||||| |:|tCAGCACTTTTCTGCTGGGGAAGTG
Ubxn4; Ubxd2; Ubxdc1rno-miR-3253359ugugaaUGACUCGUG----GAUGAUCC ||| ||||| ||:||:||ggatccACTCAGCACTTTTCTGCTGGG
Ubxn4; Ubxd2; Ubxdc1rno-miR-327253271ugGGAGUACGGGGAGUUCc |:||| ||||| ||gaCTTCACAGCCCTCTAGc
Ubxn4; Ubxd2; Ubxdc1rno-miR-337140164UUUCCG--UAGUAUAUCCUCGACUU|||| | | |||: || |||||:|AAAGTCAGAACATGAAGTAGCTGGA
Ubxn4; Ubxd2; Ubxdc1rno-miR-3455273cguGACCUGAUC-CCCAGUCGu ||||: || ||||| ||ctgCTGGGGAAGTGGGTCTGCt
Ubxn4; Ubxd2; Ubxdc1rno-miR-349509530ucuccaauucugucGUCCCGAC ||||||||atctttttgttgtaCAGGGCTG
Ubxn4; Ubxd2; Ubxdc1rno-miR-34a213241UUGUUGGU--CGAU----UCUGUGACGGu|: |:||| |||: | ||| |||AGAAGCCAAGGCTGCCCCCGCCACCGCCa
Ubxn4; Ubxd2; Ubxdc1rno-miR-34a190209uugUUGGUCGAUUCUGUGACGGu |||||||| :| | |||ggtAACCAGCT---GCTCAGCCt
Ubxn4; Ubxd2; Ubxdc1rno-miR-34b580609GUUAGUCGAUU-----AAUG--UGACGGAu| :||||| || | || |||||||CTGTCAGCAAAACAACTGACTGACTGCCTt
Ubxn4; Ubxd2; Ubxdc1rno-miR-34c586608CG-UUAGUCGAUUGAUGUGACGGA|| || || ||:||| |||||||GCAAAACAACTGACT-GACTGCCT
Ubxn4; Ubxd2; Ubxdc1rno-miR-351187209gUCCGAGUUUCCCGAGGAGUCccu ||| | || ||| |||||tAGGGT-AACCAGCTGCTCAGcct
Ubxn4; Ubxd2; Ubxdc1rno-miR-352185205augauaCGUUGGAUGAUGAGa |:|||| :||:|||aataggGTAACCAGCTGCTCa
Ubxn4; Ubxd2; Ubxdc1rno-miR-363-5p1843uuuaACGUAGCA----CUAGGUGGGc ||| || | |||||||:|ccgcTGCTTCCTTTAGGATCCACTCa
Ubxn4; Ubxd2; Ubxdc1rno-miR-376b6280UCACCUACAAGGAGAUACua|||||:| | |||||||AGTGGGT-CTGCTCTATGtt
Ubxn4; Ubxd2; Ubxdc1rno-miR-376c6280gCACUUUAAAGGAGAUACAA ||| ::| | |||||||||aGTG-GGTCTGCTCTATGTT
Ubxn4; Ubxd2; Ubxdc1rno-miR-409-5p178197guuucaacgAGCCCAUUGGa | ||||||||tctaatcaaTAGGGTAACCa
Ubxn4; Ubxd2; Ubxdc1rno-miR-412362384ugcCGAUCACCUGGUCCACUuca || || |:|||||||taaGCGAGCTAATCAGGTGAtaa
Ubxn4; Ubxd2; Ubxdc1rno-miR-449217241uGGU--CGAUUGUUAU-GUGACGGU ||| |||: | : ||| ||||gCCAAGGCTGCCCCCGCCACCGCCA
Ubxn4; Ubxd2; Ubxdc1rno-miR-485395422CUUAAGUAGUGCCG------GUCGGAGa| :||: || : || |||||||GCGTTTCTCTTTGCACTCATCAGCCTCa
Ubxn4; Ubxd2; Ubxdc1rno-miR-499329350uuUGUAGUGACGU-UCAGAAUu |::|||||| : ||||| |gtATGTCACTGAGTAGTCTGAg
Ubxn4; Ubxd2; Ubxdc1rno-miR-503726guCAUGACAAGGGCGACGAu |||| | |||||||||gtGTACGCTCCCCGCTGCTt
Ubxn4; Ubxd2; Ubxdc1rno-miR-542-3p318338aaGUCAAUAGUUAGACAGUGu |||| ||:::| ||||||caCAGTAATTGGTATGTCACt
Ubxn4; Ubxd2; Ubxdc1rno-miR-542-5p330357gcACUGU-ACU------ACUAGGGGCUC || || ||| ||| |||||||taTGTCACTGAGTAGTCTGAGCCCCGAG
Ubxn4; Ubxd2; Ubxdc1rno-miR-932451GAUGGACGUGCU---U--GUCGUGAAAc|| ||| :| || | |||||||||CTTCCTTTAGGATCCACTCAGCACTTTt
Ubxn4; Ubxd2; Ubxdc1rno-miR-98585610UUGUUAUGUUGA---A-UGAUGGAgu|:||| |||||| | |||:|||AGCAAAACAACTGACTGACTGCCTtt
Ubxn4; Ubxd2; Ubxdc1rno-miR-106b4451U-----AGACGUGAC-----------------AGUCGUGAAAU || |:||| ||||||||||GUACGCUCCCCGCUGCUUCCUUUAGGAUCCACUCAGCACUUUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-130a405412--------UACG---GGA---AAAUUGU-------AACGUGAC :|| |: ||||:|: |||||||CUAAUCAGGUGAUAACUGAUGUUUAGCGUUUCUCUUUGCACUC
Ubxn4; Ubxd2; Ubxdc1rno-miR-130b405412------------------UACG----GGAAAGUAGUAACGUGAC |||: | |||| || |||||||CUAAUCAGGUGAUAACUGAUGUUUAGCGUUUC-UCUUUGCACUC
Ubxn4; Ubxd2; Ubxdc1rno-miR-174451-----------UGAUGGAC----------GUGACAUUCGUGAAAC :||:|:| |||| ||||||||GUACGCUCCCCGCUGCUUCCUUUAGGAUCCACUC--AGCACUUUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-19a404411AGU------------------CAAAACGUAUCU--AAACGUGU |||| ||:| |||||||GCUAAUCAGGUGAUAACUGAUGUUUAGCGUUUCUCUUUGCACU
Ubxn4; Ubxd2; Ubxdc1rno-miR-19b404411AGU------------------CAAAACGUACCU--AAACGUGU |||| ||:| |||||||GCUAAUCAGGUGAUAACUGAUGUUUAGCGUUUCUCUUUGCACU
Ubxn4; Ubxd2; Ubxdc1rno-miR-20a4451------------GAUGGAC----------GUGAUAUUCGUGAAAU ||:|:| |||| ||||||||GUACGCUCCCCGCUGCUUCCUUUAGGAUCCACUC--AGCACUUUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-24346353G--------------------ACAAGGACGACUU-GACUCGGU ||| ||| |||||||CAAGCCACACAGUAAUUGGUAUGUCACUGAGUAGUCUGAGCCC
Ubxn4; Ubxd2; Ubxdc1rno-miR-291-3p356363-------CCGU---GUGUUUCACC----------UUCGUGAAA ||:| ||| :||| | :|||||||AGUAAUUGGUAUGUCACUGAGUAGUCUGAGCCCCGAGCACUUA
Ubxn4; Ubxd2; Ubxdc1rno-miR-349523530UCUCCAAUUCUGUC---------------------GUCCCGAC ||||||||AUCUUAUUUUUGCUGUAAAGCAUCUUUUUGUUGUACAGGGCUGU
Ubxn4; Ubxd2; Ubxdc1rno-miR-34b602609GU-------------UAGUCG--------AUUAAUGUGACGGAU :||||| |:| |: |||||||UGCUGCCCUGAUUCUGUCAGCAAAACAACUGACUG-ACUGCCUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-376c7380G------------------------CACUUUAAAGGAGAUACAA |||:: | |||||||||CACUCAGCACUUUUCUGCUGGGGAAGUGGGUC-UGCUCUAUGUUU
Ubxn4; Ubxd2; Ubxdc1rno-miR-409-5p190197GUU----UCAACGAG-------------------CCCAUUGGA :| |||| ||||||||AGUAGCUGGAUGCUAGGUCCUUGUCUAAUCAAUAGGGUAACCA
Ubxn4; Ubxd2; Ubxdc1rno-miR-485415422CUUA------------------AGUA--GUGCC-GGUCGGAGA || ||| :|||||||GAUAACUGAUGUUUAGCGUUUCUCUUUGCACUCAUCAGCCUCA
Ubxn4; Ubxd2; Ubxdc1rno-miR-4947683------------------------UCCAAA-GGGCACAUACAAAGU :||| |:| ||||||||UCAGCACUUUUCUGCUGGGGAAGUGGGUCUGCUC---UAUGUUUCC
Ubxn4; Ubxd2; Ubxdc1rno-miR-934451---------------GAUGGACGUGCUU-----GUCGUGAAAC || ||| :| || |||||||||GUACGCUCCCCGCUGCUUCCUUUAGGAUCCACUCAGCACUUUU
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Ubxn4RAID00141367rno-miR-485-5pmiRNAMIMAT0003203Ubxn4mRNA304766Prediction0.2202
Ubxn4RAID00203322rno-miR-503-5pmiRNAMIMAT0003213Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID00643987rno-miR-130a-3pmiRNAMIMAT0000836Ubxn4mRNA304766Prediction0.2202
Ubxn4RAID00852974rno-miR-322-5pmiRNAMIMAT0001619Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID01025994rno-miR-106b-5pmiRNAMIMAT0000825Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID01325003rno-miR-138-5pmiRNAMIMAT0000844Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID01457718rno-miR-19a-3pmiRNAMIMAT0000789Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID01459514rno-miR-24-3pmiRNAMIMAT0000794Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID01459947rno-miR-16-5pmiRNAMIMAT0000785Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID01653849rno-miR-301a-3pmiRNAMIMAT0000552Ubxn4mRNA304766Prediction0.2202
Ubxn4RAID01749995rno-miR-376c-3pmiRNAMIMAT0003194Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID01785718rno-miR-15b-5pmiRNAMIMAT0000784Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID01824226rno-miR-146b-5pmiRNAMIMAT0005595Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID01933803rno-miR-152-3pmiRNAMIMAT0000854Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID02230666rno-miR-497-5pmiRNAMIMAT0003383Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID02234875rno-miR-103-3pmiRNAMIMAT0000824Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID02314105rno-miR-146a-5pmiRNAMIMAT0000852Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID02788467rno-miR-301b-3pmiRNAMIMAT0005304Ubxn4mRNA304766Prediction0.2202
Ubxn4RAID02956004rno-miR-154-5pmiRNAMIMAT0000856Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID02976584rno-miR-130b-3pmiRNAMIMAT0000837Ubxn4mRNA304766Prediction0.2202
Ubxn4RAID03035260rno-miR-129-5pmiRNAMIMAT0000600Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID03141497rno-miR-20a-5pmiRNAMIMAT0000602Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID03305812rno-miR-107-3pmiRNAMIMAT0000826Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID03451633rno-miR-494-3pmiRNAMIMAT0003193Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID03540131rno-miR-93-5pmiRNAMIMAT0000817Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID03558601rno-miR-140-5pmiRNAMIMAT0000573Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID03614867rno-miR-20b-5pmiRNAMIMAT0003211Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID03667356rno-miR-19b-3pmiRNAMIMAT0000788Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID03810868rno-miR-17-5pmiRNAMIMAT0000786Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID03871662rno-miR-409a-5pmiRNAMIMAT0003204Ubxn4mRNA304766Prediction0.1828
Ubxn4RAID04001187rno-miR-291a-3pmiRNAMIMAT0000895Ubxn4mRNA304766Prediction0.1828