DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004639 rno-miR-325-3p 299957 Nsmce2 aacuauccUCCACGAGUUAUUu || | | |||||| auuuuuuaAGUUACACAAUAAa 2 15 127 148 [rn4:7:96393498-96393519:+] 0.6015 122 6 -5.42 -0.3729 MIMAT0000561 rno-miR-327 299957 Nsmce2 ugGGAGU-ACGGGGAGUUCc |: || || |||||||| cuCUGCAGUGACCCUCAAGg 2 18 89 108 [rn4:7:96393460-96393479:+] 0.5360 156 7 -24.83 -0.1520 MIMAT0000594 rno-miR-345-5p 299957 Nsmce2 cgugaccUGAUCCC-CAGUCGu || :||| |||||| ccugcccACAGGGGUGUCAGCa 2 15 11 32 [rn4:7:96393382-96393403:+] 0.6674 122 6 -22.13 -0.1714 MIMAT0004720 rno-miR-30e* 299957 Nsmce2 cgacauuuguaggcuGACUUUc |||||| uuauuuucaagugcuCUGAAAu 2 8 170 191 [rn4:7:96393541-96393562:+] 0.6015 120 6 -6.56 -0.2261 MIMAT0004722 rno-miR-30d* 299957 Nsmce2 cgucguuuguagacuGACUUUc |||||| uuauuuucaagugcuCUGAAAu 2 8 170 191 [rn4:7:96393541-96393562:+] 0.6015 120 6 -9.16 -0.2261 MIMAT0000809 rno-miR-30a* 299957 Nsmce2 cgacguuuguaggcuGACUUUc |||||| uuauuuucaagugcuCUGAAAu 2 8 170 191 [rn4:7:96393541-96393562:+] 0.6015 120 6 -8.51 -0.2261 MIMAT0000847 rno-miR-142-5p 299957 Nsmce2 ucaUCACGAAAGA--UGAAAUAc ||| | || | |||||| acaAGUACAUUAUAGUCUUUAUu 2 19 152 174 [rn4:7:96393523-96393545:+] 0.6015 121 6 -6.35 -0.1449 MIMAT0000894 rno-miR-291a-5p 299957 Nsmce2 ucucucccggaggUGAAACUAc |||||||| aauuuuaaauaaaACUUUGAUa 2 10 189 210 [rn4:7:96393560-96393581:+] 0.6015 145 7 -10.27 -1.3071 MIMAT0005280 rno-miR-743b 299957 Nsmce2 agauaagucauaccaCAGAAAg |||||| cacaaguacauuauaGUCUUUa 2 8 151 172 [rn4:7:96393522-96393543:+] 0.6015 120 6 -6.69 -0.4994 MIMAT0005281 rno-miR-871 299957 Nsmce2 acacuggccgUGGUUAGACUUau | :: |||||| uuuauuuucaAGUGCUCUGAAau 3 14 169 191 [rn4:7:96393540-96393562:+] 0.6015 121 0 -8.71 -0.1878 MIMAT0005334 rno-miR-743a 299957 Nsmce2 agaugggucaaaccgCAGAAAg |||||| cacaaguacauuauaGUCUUUa 2 8 151 172 [rn4:7:96393522-96393543:+] 0.6015 120 6 -7.98 -0.5029 MIMAT0012834 rno-miR-592 299957 Nsmce2 ugUAGUAGCGUA-UAACUGUGUUa | |||: : | | | |||||| aaAGCAUUUUUUAAGUUACACAAu 2 22 122 145 [rn4:7:96393493-96393516:+] 0.6015 124 6 -9.28 -0.3010 MIMAT0012834 rno-miR-592 299957 Nsmce2 uguaguagcguauaacUGUGUUa |||||| aaguuacacaauaaaaACACAAg 2 8 134 156 [rn4:7:96393505-96393527:+] 0.6015 120 6 -6.46 -0.3217 MIMAT0012836 rno-miR-628 299957 Nsmce2 ggaGAGCAUUUAUACAGUCGUa | | |:: :|||||||| cugCCCACAGGGGUGUCAGCAg 2 20 12 33 [rn4:7:96393383-96393404:+] 0.6674 151 7 -17.03 -0.1321 MIMAT0000562 rno-let-7d 299957 Nsmce2 uugaUAC-GUUGGAUGAUGGAGa :|| ||:| ||||||| agggGUGUCAGCAGCCUACCUCc 2 19 20 42 [rn4:7:96393391-96393413:+] 0.6674 149 7 -18.15 -0.1807 MIMAT0004641 rno-miR-330 299957 Nsmce2 cggauucuGUGUCCG-GGUCUCu ||||| | |||||| uaccucccCACAGCCACCAGAGa 2 15 36 58 [rn4:7:96393407-96393429:+] 0.6674 126 6 -25.15 -0.3998 MIMAT0004650 rno-miR-340-5p 299957 Nsmce2 uuagUCA-G-AGUAAC-GAAAUAuu ||| | |:|| | |||||| cacaAGUACAUUAUAGUCUUUAUuu 3 19 151 175 [rn4:7:96393522-96393546:+] 0.6015 131 0 -7.65 -0.1288 MIMAT0000774 rno-let-7a 299957 Nsmce2 uugAUAUGUUGGAUGAUGGAGu |:| ||:| ||||||| gggUGU-CAGCAGCCUACCUCc 2 20 22 42 [rn4:7:96393393-96393413:+] 0.6674 149 7 -16.53 -0.1841 MIMAT0000775 rno-let-7b 299957 Nsmce2 uugguguGUUGGAUGAUGGAGu ||:| ||||||| gggguguCAGCAGCCUACCUCc 2 16 21 42 [rn4:7:96393392-96393413:+] 0.6674 147 7 -18.30 -0.1841 MIMAT0000776 rno-let-7c 299957 Nsmce2 uugguauGUUGGAUGAUGGAGu ||:| ||||||| gggguguCAGCAGCCUACCUCc 2 16 21 42 [rn4:7:96393392-96393413:+] 0.6674 147 7 -18.30 -0.1841 MIMAT0000777 rno-let-7e 299957 Nsmce2 uugAUAUGUUGGAGGAUGGAGu |:| ||:| |||||||| gggUGU-CAGCAGCCUACCUCc 2 20 22 42 [rn4:7:96393393-96393413:+] 0.6674 157 7 -22.65 -0.1841 MIMAT0000778 rno-let-7f 299957 Nsmce2 uugAUAUGUUAGAUGAUGGAGu |:| ||: ||||||| gggUGU-CAGCAGCCUACCUCc 2 20 22 42 [rn4:7:96393393-96393413:+] 0.6674 141 7 -13.02 -0.1858 MIMAT0000779 rno-let-7i 299957 Nsmce2 uugUCGUGUUUGAU-GAUGGAGu :|::: |:| : ||||||| aggGGUGUCAGCAGCCUACCUCc 2 20 20 42 [rn4:7:96393391-96393413:+] 0.6674 146 7 -15.71 -0.1841 MIMAT0000819 rno-miR-98 299957 Nsmce2 uuguuauGUUGAAUGAUGGAGu ||:| ||||||| gggguguCAGCAGCCUACCUCc 2 16 21 42 [rn4:7:96393392-96393413:+] 0.6674 147 7 -15.04 -0.1841 MIMAT0000843 rno-miR-137 299957 Nsmce2 gaUGCGCAUAAGAAUUCGUUAUu ::| | :||| ||||||| gaGUGAGCGUUC-ACAGCAAUAg 2 22 57 78 [rn4:7:96393428-96393449:+] 0.6674 147 7 -13.36 -0.1396 MIMAT0003208 rno-miR-374 299957 Nsmce2 gugaaucguccaacaUAAUAUa |||||| uaaaaacacaaguacAUUAUAg 2 8 145 166 [rn4:7:96393516-96393537:+] 0.6015 120 6 -4.57 -0.2699 MIMAT0003381 rno-miR-499 299957 Nsmce2 uuUGUAGUGACGUUCAGAAuu ||||:|: |||||| guACAUUAU----AGUCUUua 3 20 156 172 [rn4:7:96393527-96393543:+] 0.6015 126 0 -10.80 -0.4181

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G100438 Nsmce2 Rattus norvegicus 299957

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Nsmce2; Mms21 rno-let-7a 29 43 UUGAUAUGUUGGAUGAUGGAGU :||:||| ||||| -----AGCAGCCU---ACCUCC Nsmce2; Mms21 rno-let-7b 15 43 UUGGUGU-------GUUGGAUGAUGGAGU ||||| ||:| ||||||| -CCCACAGGGGUGUCAGCAGCCUACCUCC Nsmce2; Mms21 rno-let-7d 29 43 UGAUACGUUGGAUGAUGGAGA |||:||| ||||| ----AGCAGCCU---ACCUCC Nsmce2; Mms21 rno-let-7e 23 43 UGAUAU-GUUGGAGGAUGGAGU :|: ||:| |||||||| --GGUGUCAGCAGCCUACCUCC Nsmce2; Mms21 rno-miR-17 107 133 -UGAUGGACG-UGACAUUCGUGAAAC :||| :||: |:|| |||||:||| GGCUAAUUGUAAUUGAAAGCAUUUUU Nsmce2; Mms21 rno-miR-196a 26 42 -GGUUGUUGUACUUUGAUGGAU :||:||:| |||||| GUCAGCAGC------CUACCUC Nsmce2; Mms21 rno-miR-196b 3 39 -GGUUGU--------UGUCCUUUGA-----UGGAU- |||:| |||||:: | :|||| GCCAGCCCCCUGCCCACAGGGGUGUCAGCAGCCUAC Nsmce2; Mms21 rno-miR-20a 108 133 -GAUGGACG-UGAUAUUCGUGAAAU ||| :||: |:|: |||||:||| GCUAAUUGUAAUUGAAAGCAUUUUU Nsmce2; Mms21 rno-miR-20b* 69 99 -GUCU---UCA----CGAGUGUGACGUCA- ||| || || :| ||||||| ACAGCAAUAGGCCCGGCAAGCUCUGCAGUG Nsmce2; Mms21 rno-miR-217 80 100 UAGGUCAGUCAAGGACUACGUCAU- ||:| || |: ||||||: -CCCGG-CAAG-CUC--UGCAGUGA Nsmce2; Mms21 rno-miR-224 81 102 AUUUGCC--UUGG--UGAUCACUGAAC ||| |:|: :| |||||| ---CCGGCAAGCUCUGC-AGUGACC-- Nsmce2; Mms21 rno-miR-28 72 94 GAGUUAUCUGA-CAC-UCGAGGAA ||||||:| | |||||: -GCAAUAGGCCCGGCAAGCUCUG- Nsmce2; Mms21 rno-miR-292-3p 62 88 -UGUGAGUUUUGGA--CCG--CCGUGAA :|::||| |:| ||| |||| AGCGUUCACAGCAAUAGGCCCGGCAA-- Nsmce2; Mms21 rno-miR-298 20 52 CCUUC----UUGUCGGGAGGAGA-----CGG- | | |:|||||: |||| ||| AGGGGUGUCAGCAGCCUACCUCCCCACAGCCA Nsmce2; Mms21 rno-miR-29c* 49 71 CUUGUGGUC-CUCUUUAGCCAGU- |||||| ||| || ||| --CCACCAGAGAGUGAGCGUUCAC Nsmce2; Mms21 rno-miR-324-3p 80 100 -GGUCG-UCGUGGACCCCGUCACC ||:|| ||| :|| |||||| CCCGGCAAGC-UCU---GCAGUGA Nsmce2; Mms21 rno-miR-324-5p 2 29 UGUGGUU-----ACGGGAUCCCCUACGC :|||: ||||| |||:||: -AGCCAGCCCCCUGCCCACAGGGGUGUC Nsmce2; Mms21 rno-miR-327 87 110 -UGGGAG--UACGGGGAGUUCC- :|:|| :|| ||||||||| AGCUCUGCAGUGACCCUCAAGGC Nsmce2; Mms21 rno-miR-330 88 118 AGAGACGUC-C-GGGACA--CGA--AACG- |||||||| | |||| ||| |||: GCUCUGCAGUGACCCUCAAGGCUAAUUGUA Nsmce2; Mms21 rno-miR-339 1 26 ACUCGA-----GGACCUCCUGUCCCU- |||| |||| ||||||: -GAGCCAGCCCCCUGCCC-ACAGGGGU Nsmce2; Mms21 rno-miR-345 6 34 -CGU--GACC--UGAUCCC-CAGUCGU- || ||| || :||| ||||||| AGCCCCCUGCCCACAGGGGUGUCAGCAG Nsmce2; Mms21 rno-miR-349 19 35 -UCUCCAAUUCUGUCGUCCCGAC ||:||| |||||| CAGGGGUGU---CAGCAGC---- Nsmce2; Mms21 rno-miR-34a 1 18 UUGUUGGUCGAUUCUGUGACGGU |:||||| | ||||| --GAGCCAGCC----CCCUGCCC Nsmce2; Mms21 rno-miR-351 75 101 -GUCCGAGUUUCCCGAGGAGUCCCU- :|||| |:: ||||: ||| || AUAGGCCCGGCAAGCUCUGCAGUGAC Nsmce2; Mms21 rno-miR-370 1 24 -UUGGUCCAAGGUGGGGUCGUCCG |:|||| || |||| |||| GAGCCAGCCCCCUGCCCA-CAGGG Nsmce2; Mms21 rno-miR-378 16 35 UGUGUCCUGGACCUCAGUCCUC- |||||| || ||||| || CCACAGG----GGUGUCAGCAGC Nsmce2; Mms21 rno-miR-431 71 97 ACGUACUGCCGGA-CGUUC----UGU- ||| |||| ||||| :|| AGCAAUA-GGCCCGGCAAGCUCUGCAG Nsmce2; Mms21 rno-miR-493 82 107 GACCGUG-----UGUCAUCUGGAAGU- |||| :|||| |||| ||| -CGGCAAGCUCUGCAGU-GACCCUCAA Nsmce2; Mms21 rno-miR-9 44 60 AGUAUGUCGAUCUAUUGGUUUCU- ||||| ||||:||| ---CACAGCC-----ACCAGAGAG Nsmce2; Mms21 rno-miR-98 17 43 UUGUUAU----GUUGAAUGAUGGAGU |||: ||:| ||||||| CACAGGGGUGUCAGCAGCCUACCUCC Nsmce2; Mms21 rno-let-7a 21 42 uugauauGUUGGAUGAUGGAGu ||:| ||||||| ggggtgtCAGCAGCCTACCTCc Nsmce2; Mms21 rno-let-7b 14 42 uuGGUGU-------GUUGGAUGAUGGAGu ||||| ||:| ||||||| gcCCACAGGGGTGTCAGCAGCCTACCTCc Nsmce2; Mms21 rno-let-7d 25 42 ugauaCGUUGGAUGAUGGAGa |||:| ||||||| tgtcaGCAGC---CTACCTCc Nsmce2; Mms21 rno-let-7e 22 42 ugauauGUUGGAGGAUGGAGu ||:| |||||||| gggtgtCAGCAGCCTACCTCc Nsmce2; Mms21 rno-miR-17 108 132 uGAUGGACG-UGACAUUCGUGAAAc ||| :||: |:|| |||||:||| gCTAATTGTAATTGAAAGCATTTTt Nsmce2; Mms21 rno-miR-196a 27 41 gGUUGUUGUACUUUGAUGGAu ||:||:| |||||| tCAGCAGC------CTACCTc Nsmce2; Mms21 rno-miR-196b 15 41 GGUUGUU------GUCCUUUGAUGGAu || |||: ||| |: |||||| CCCACAGGGGTGTCAGCAGCCTACCTc Nsmce2; Mms21 rno-miR-20a 109 132 GAUGGACG-UGAUAUUCGUGAAAu ||| :||: |:|: |||||:||| CTAATTGTAATTGAAAGCATTTTt Nsmce2; Mms21 rno-miR-20b* 70 97 GUCUUCA--CGAG-----UGUGACGUCA ||| | | || | :| ||||||| CAGCAATAGGCCCGGCAAGCTCTGCAGT Nsmce2; Mms21 rno-miR-217 79 98 uaGGUCAGUCAAGGACUACGUCAu ||:| || || |||||| gcCCGGCAAGCTC----TGCAGTg Nsmce2; Mms21 rno-miR-224 78 103 auuuGCC-UUGGUGA--UCACUGaac ||| || | || |||||| ggccCGGCAAGCTCTGCAGTGACcct Nsmce2; Mms21 rno-miR-28 71 94 gaGUUAUCU--GACACUCGAGgaa ||||||: | | ||||| agCAATAGGCCCGGCAAGCTCtgc Nsmce2; Mms21 rno-miR-292-3p 63 89 uGUGAGUUUUG--GACC--GCCGUgaa |::||| |:| : || ||||| gCGTTCACAGCAATAGGCCCGGCAagc Nsmce2; Mms21 rno-miR-298 22 50 CCUUC--UUGUCG---GGA--GGAGACGG ||: | |:|||| ||| || | ||| GGGTGTCAGCAGCCTACCTCCCCACAGCC Nsmce2; Mms21 rno-miR-29c* 47 69 cuuGUGGUC-CUCUUUAGCCAGU |||||| ||| :| || ||| agcCACCAGAGAGTGAGCGTTCA Nsmce2; Mms21 rno-miR-324-3p 81 99 GGUCG-UCGUGGACCCCGUCACc ||:|| ||| :|| |||||| CCGGCAAGC-TCT---GCAGTGa Nsmce2; Mms21 rno-miR-324-5p 6 28 uguGGUUACGGGAUCCCCUACgc || ||||| |||:|| agcCCCCTGCCCACAGGGGTGtc Nsmce2; Mms21 rno-miR-327 88 108 uGGGA-GU-ACGGGGAGUUCC |:|| || || ||||||||| gCTCTGCAGTGACCCTCAAGG Nsmce2; Mms21 rno-miR-330 67 94 AGAGACG---UCCGGGAC--ACGAAACG || | || |||||| | ||| ||| TCACAGCAATAGGCCCGGCAAGCTCTGC Nsmce2; Mms21 rno-miR-339 4 24 acUCGAGGACCUCCUGUCCCu ||| || | |||||| ccAGCCCCCTGCCCACAGGGg Nsmce2; Mms21 rno-miR-345 9 32 cGUGAC--CUGAUCCC-CAGUCGU | ||| || :||| ||||||| cCCCTGCCCACAGGGGTGTCAGCA Nsmce2; Mms21 rno-miR-349 5 26 ucuccaauuCUGUCGUCCCGAC | | ||||| || cagccccctGCCCACAGGGGTG Nsmce2; Mms21 rno-miR-351 85 109 GUCCGAG-UUUCCCGAGGAGUCCCu || |||| : || | ||||| || CAAGCTCTGCAGTGACCCTCAAGGc Nsmce2; Mms21 rno-miR-370 2 35 UUGGUCCAAGG-UGGG----------GUCGUCcg |:|||| || :||| |||||| AGCCAGCCCCCTGCCCACAGGGGTGTCAGCAGcc Nsmce2; Mms21 rno-miR-493 81 105 GACCGU-----GUGUCAUCUGGAAGU | |||| ::|||| |||| ||| CCGGCAAGCTCTGCAGT-GACCCTCA Nsmce2; Mms21 rno-miR-9 41 58 aguaUGUCGAUCUAUUGGUUUCU ||||| ||||:||| ccccACAGC-----CACCAGAGA Nsmce2; Mms21 rno-miR-98 21 42 uuguuauGUUGAAUGAUGGAGu ||:| ||||||| ggggtgtCAGCAGCCTACCTCc Nsmce2; Mms21 rno-miR-327 101 108 ----------------------UGGGAG--UACGGGGAGUUCC :|:|| :|| ||||||||| UUCACAGCAAUAGGCCCGGCAAGCUCUGCAGUGACCCUCAAGGC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nsmce2 RAID00204854 rno-let-7i-5p miRNA MIMAT0000779 Nsmce2 mRNA 299957 Prediction 0.2202 Nsmce2 RAID00673930 rno-miR-374-5p miRNA MIMAT0003208 Nsmce2 mRNA 299957 Prediction 0.1828 Nsmce2 RAID00719922 rno-let-7c-5p miRNA MIMAT0000776 Nsmce2 mRNA 299957 Prediction 0.2202 Nsmce2 RAID00812422 rno-miR-330-5p miRNA MIMAT0004641 Nsmce2 mRNA 299957 Prediction 0.1828 Nsmce2 RAID00835551 rno-miR-137-3p miRNA MIMAT0000843 Nsmce2 mRNA 299957 Prediction 0.1828 Nsmce2 RAID01257505 rno-miR-340-5p miRNA MIMAT0004650 Nsmce2 mRNA 299957 Prediction 0.1828 Nsmce2 RAID01543653 rno-miR-499-5p miRNA MIMAT0003381 Nsmce2 mRNA 299957 Prediction 0.1828 Nsmce2 RAID01792094 rno-let-7b-5p miRNA MIMAT0000775 Nsmce2 mRNA 299957 Prediction 0.2202 Nsmce2 RAID01913230 rno-miR-98-5p miRNA MIMAT0000819 Nsmce2 mRNA 299957 Prediction 0.2202 Nsmce2 RAID01946041 rno-let-7d-5p miRNA MIMAT0000562 Nsmce2 mRNA 299957 Prediction 0.1828 Nsmce2 RAID02202202 rno-let-7f-5p miRNA MIMAT0000778 Nsmce2 mRNA 299957 Prediction 0.2202 Nsmce2 RAID02857042 rno-let-7a-5p miRNA MIMAT0000774 Nsmce2 mRNA 299957 Prediction 0.2202 Nsmce2 RAID03271355 rno-let-7e-5p miRNA MIMAT0000777 Nsmce2 mRNA 299957 Prediction 0.2202