DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Sh3pxd2b; RGD1309926 rno-let-7a 1270 1296 -UUGAUAU---GUUGGAUGAUGGAGU ::||: | || |||||||| GGGCUGGAUCCCUUCCAACUACCUCC Sh3pxd2b; RGD1309926 rno-let-7b 125 153 UUGGUGUGU---------UGGAUGAUGGAGU ||||||| :|||| :|||| -CCCACACAGGAGGAGAAGCCUA--GCCUCC Sh3pxd2b; RGD1309926 rno-let-7c 550 577 -UUGGUA----UGUUGGAUGAUGGAGU- :|||| || |:|||| |||||| AGACCAAGUGGAC-AUCUACAACCUCAG Sh3pxd2b; RGD1309926 rno-let-7d 1093 1110 UGAUACGUUGGAUGAUGGAGA |||:|:| || |||| ----AGCAGCUUCCUUCCUCA Sh3pxd2b; RGD1309926 rno-let-7e 1093 1111 UGAUAUGUUGGAGGAUGGAGU- :||:|:|||| ||||| ----AGCAGCUUCCUUCCUCAA Sh3pxd2b; RGD1309926 rno-let-7f 560 577 UUGAUAUGUUAGAUGAUGGAGU- || |||||| |||||| -----GAC-AUCUACAACCUCAG Sh3pxd2b; RGD1309926 rno-miR-103 16 37 AGUAUC-GGGACAUGUUACGACGA :|:| |:||| :||||||: -UGUGGACUCUGG--GAUGCUGUG Sh3pxd2b; RGD1309926 rno-miR-10a 1220 1247 GUGUUUAA----GCCUAGAUGUCCCAU :||: :|| |||:| |||| AGCAGUGGCUGGUGGUUCUGCCGGGUC Sh3pxd2b; RGD1309926 rno-miR-10b 1220 1246 UGUGUUUAA----GCCAAGAUGUCCC- :||: :||||||:| ||| -AGCAGUGGCUGGUGGUUCUGCCGGGU Sh3pxd2b; RGD1309926 rno-miR-125a 911 938 -GUGUCCAAUUUCCCAGAGUC-C-CU- || |||| |:|||||| ||| | || CCAGAGGUCAGAGGGUCACAGCGUGAA Sh3pxd2b; RGD1309926 rno-miR-125b 911 938 AGUGUUCAA--UCCCAGAGUC-C-CU- || |:|| |||||| ||| | || CCAGAGGUCAGAGGGUCACAGCGUGAA Sh3pxd2b; RGD1309926 rno-miR-127 1238 1266 UCGGUUCG--AGUCUGCCU-----AGGCU |||::|: |||| ||: ||| UGCCGGGUCCUCAGUGGGGCACCUUCCU- Sh3pxd2b; RGD1309926 rno-miR-129 288 311 UCGUUCGGGUCUGG-CGUUUUUC || :||||:|: ||||:|| CGCUGGCCCGGGACAGCAAGAAA Sh3pxd2b; RGD1309926 rno-miR-129* 1237 1276 UACGAAAA-------ACCCCA----------UUCCCGAA ||| ||||| :|||||| CUGCCGGGUCCUCAGUGGGGCACCUUCCUGGGAGGGCUG Sh3pxd2b; RGD1309926 rno-miR-133a 1060 1088 -UGUCGACCAACUUC-CCCU----GGUU- |:|||||| |:| |||| |||: CAUAGCUGGCA-AGGUGGGAGAAACCAGA Sh3pxd2b; RGD1309926 rno-miR-133b 637 653 AUCGACCAACUUCCCCUGGUU |||| |||||:||| -UGCUGC----AGGGGGCCAU Sh3pxd2b; RGD1309926 rno-miR-134 905 932 -GGGAGA----CCAGUUGGUCAGUGU- ||||| |||||: :|||||| CCCCUCCCAGAGGUCAGAGGGUCACAG Sh3pxd2b; RGD1309926 rno-miR-135b 126 146 -GUGUAUCCUUACUUUUCGGUAU |||| ||||: ||:||||| CCACACAGGAG-GAGAAGCCU-- Sh3pxd2b; RGD1309926 rno-miR-138 1168 1179 CUAAGUGUUGUGGUCGA :|||||||| ------AGACACCAGCA Sh3pxd2b; RGD1309926 rno-miR-139 6 23 UCUGUGCACGUGACAUCU- :|||| :||||:|| -CGCACGGA-GCUGUGGAC Sh3pxd2b; RGD1309926 rno-miR-140 534 557 GAUGGUA---UCCCAU-UUUGGUGA :||| |||||: |:|||| -AGCCAGCUCAGGGUGAAGACCAA- Sh3pxd2b; RGD1309926 rno-miR-140* 1228 1256 ACAGGCACCAAGAUG-----GGA--CACCAU : ||||||||:| ||| |||| --CUGGUGGUUCUGCCGGGUCCUCAGUGGG- Sh3pxd2b; RGD1309926 rno-miR-141 1172 1202 -GGUA---GAAAUGG------UCUGUCACAAU ||| ||| || :||||||||| ACCAGCAGCUU--CCAGGAAGGGACAGUGUUU Sh3pxd2b; RGD1309926 rno-miR-145 1252 1280 UUCCCU----AAGGACCCUUUUGACCUG- |||: |||||||||:::|||||: -UGGGGCACCUUCCUGGGAGGGCUGGAUC Sh3pxd2b; RGD1309926 rno-miR-150 1063 1082 GUGACCAUGUUCCCAACCCUCU- :|||| ||||| ||||||| AGCUGG--CAAGG--UGGGAGAA Sh3pxd2b; RGD1309926 rno-miR-15b 15 37 -ACAUUUGGUACUACACGACGAU |||::||: ||: |||||: CUGUGGACUCUGGGAUGCUGUG- Sh3pxd2b; RGD1309926 rno-miR-18 1235 1264 AUAGACG---------UGAUCUACGUGGAAU ||||| | |:|: ||||||| -UUCUGCCGGGUCCUCAGUGGG-GCACCUUC Sh3pxd2b; RGD1309926 rno-miR-189 1226 1261 -UGACUAU--AGUCG-------AGUCA-UCCGUG- :|||:|: || || ||||| :||||| GGCUGGUGGUUCUGCCGGGUCCUCAGUGGGGCACC Sh3pxd2b; RGD1309926 rno-miR-193 687 708 GACCCUGAAACAU---CCGGUCAA ||||| || |||||| -AGGGACC-UGGCCGUGGCCAGG- Sh3pxd2b; RGD1309926 rno-miR-204 1035 1080 -UCCGU---------AUCCU-----------ACUGUUUC-CCUU ||||| |:||: ||:|||:| ||:| GAGGCAAAGGUGGUCUGGGGCCACGCAUAGCUGGCAAGGUGGGAG Sh3pxd2b; RGD1309926 rno-miR-205 18 56 GUCUGAGGCC-------ACCUUA--------CUUCCU- :|||||:|| ||| |||||: UGGACUCUGGGAUGCUGUGGUCCAAAGACUGGAAGGGA Sh3pxd2b; RGD1309926 rno-miR-207 682 715 UUCCCUCCUCU----------CGGUCCUCUUCG- :|||||| || ||||||| |:|: CGGGGAGG-GACCUGGCCGUGGCCAGGACAGGUC Sh3pxd2b; RGD1309926 rno-miR-20b* 622 646 GUCUUCA--CGA--GUGUGACGUCA |:|| || ||::|||||| -UGGAGAAAGCCACCAUGCUGCAGG Sh3pxd2b; RGD1309926 rno-miR-214 792 818 GACGG--------ACAGACACGGACGACA ||| || |||||||||: -GGCCCAAGAAUGUGCCUGUGCCUGUC-- Sh3pxd2b; RGD1309926 rno-miR-24 427 446 GACAAGGA--CGACUUGACUCGGU ||| |||||:|| ||| ---GUCCAAGGCUGAGCU--GCCU Sh3pxd2b; RGD1309926 rno-miR-27a 9 39 CGCCUUGA-AUC-GG-------UGACACUU ||||:|| |:| |: :|||||: ACGGAGCUGUGGACUCUGGGAUGCUGUGGU Sh3pxd2b; RGD1309926 rno-miR-291-3p 1063 1081 CCGUGUGUUUCACCUUCGUGAAA || :|||:||||:|| AGCUGGCAAGGUGGGAGA----- Sh3pxd2b; RGD1309926 rno-miR-296 44 70 -UGUCCUAA-CUCCC--CC-CCGGGA || ||| |||| || ||||| GACUGGAAGGGAGGAAAGGAGGCCCC Sh3pxd2b; RGD1309926 rno-miR-298 1074 1116 -CCUUCU-------------UGUCG---GGAGGAG--ACGG ||:||| :|||| |:||||| |||| UGGGAGAAACCAGAGAGAAAGCAGCUUCCUUCCUCAAUGCCG Sh3pxd2b; RGD1309926 rno-miR-29c* 103 124 -CUUGUGGUCCUCUUUAGCCAGU |:|:|: |||||| |||| AGGAUAUGAGGAGAUCUCGGA-- Sh3pxd2b; RGD1309926 rno-miR-300 1265 1288 CUUCUCUCGAAC--GGGAACGUAU ::|||:||| ||||| || UGGGAGGGCUGGAUCCCUUCCAA- Sh3pxd2b; RGD1309926 rno-miR-30a-3p 13 54 -CGACGUUUG--------------UAGG---CUGACUUUC ||||:::|| :||| |||||:||| AGCUGUGGACUCUGGGAUGCUGUGGUCCAAAGACUGGAAGG Sh3pxd2b; RGD1309926 rno-miR-30d 1179 1204 -GAAGGUCAG-CCCC--UACAAAUGU ||||||| ||| :|||||: GCUUCCAGGAAGGGACAGUGUUUGA- Sh3pxd2b; RGD1309926 rno-miR-324-3p 1218 1256 GGUCGUCGUGGACC-CCG--------------UCACC- ||||||:: |||| ||: ||||| ACAGCAGUGGCUGGUGGUUCUGCCGGGUCCUCAGUGGG Sh3pxd2b; RGD1309926 rno-miR-324-5p 6 34 -UGUGGUUACGGGAUC-----CCCUACGC :||| :| ||: |:| ||||||| CGCACGGA-GCUGUGGACUCUGGGAUGCU Sh3pxd2b; RGD1309926 rno-miR-326 1063 1090 -UGACC--UCCUUCCCG----GGUCUCC :|||| ||| ||| |||||| AGCUGGCAAGGU-GGGAGAAACCAGAGA Sh3pxd2b; RGD1309926 rno-miR-327 747 771 -UGGGA--GUACGGGGAGU-UCC- :|||| |: ||||||| ||| CGCCCUGCCGAGCCCCUCCCAGGC Sh3pxd2b; RGD1309926 rno-miR-328 1240 1278 UGCCU--------UCCCGU-------CUCUCCCGGUC- |||: :||||| |:||||||::| CCGGGUCCUCAGUGGGGCACCUUCCUGGGAGGGCUGGA Sh3pxd2b; RGD1309926 rno-miR-331 1227 1259 AAGAUC-CUA------UCCGGGU----CCCCG- ||:| |:| :||:|| ||||| -GCUGGUGGUUCUGCCGGGUCCUCAGUGGGGCA Sh3pxd2b; RGD1309926 rno-miR-336 18 60 -UCUGA---UCUAU---------------ACCUUCCCA-CU :|||| :|||: |||||||| || UGGACUCUGGGAUGCUGUGGUCCAAAGACUGGAAGGGAGGAA Sh3pxd2b; RGD1309926 rno-miR-337 1252 1279 UUUCCGUAGUAU-AUCCU--CGACUU- ::|||| | |:||| ||||:| UGGGGCACCUUCCUGGGAGGGCUGGAU Sh3pxd2b; RGD1309926 rno-miR-339 1253 1278 ACUCG----AGGA-CCUCCUGUCCCU |:|| |||| |||||:| || GGGGCACCUUCCUGGGAGGGCUGGA- Sh3pxd2b; RGD1309926 rno-miR-340 192 221 CCGAUA----UUUCAUUGACU-CUGCCU- |||: ::|| :|| || ||:||| UGCUGGAGAGGGAGAGACAGAAGAUGGAG Sh3pxd2b; RGD1309926 rno-miR-342 1049 1080 CUGCCCACGCUAAA----GACA----CACUCU- :||| || ||| |||:|| -CUGGG-GCCACGCAUAGCUGGCAAGGUGGGAG Sh3pxd2b; RGD1309926 rno-miR-343 1047 1082 -AGACCC--GUGUG-----------CCUCCCUCU- |||||| |||:| || |||||| GUCUGGGGCCACGCAUAGCUGGCAAGGUGGGAGAA Sh3pxd2b; RGD1309926 rno-miR-344 1242 1281 UGCCAG-------UCCGAAA----------CCGAUCUAGU |||| :||| ||||:|||| -GGGUCCUCAGUGGGGCACCUUCCUGGGAGGGCUGGAUCC Sh3pxd2b; RGD1309926 rno-miR-346 698 725 UCUCC-GUCCG--UGAGUCCGUCUGU- | || |||| : || |||||||| CGUGGCCAGGACAGGUCUGGCAGACAG Sh3pxd2b; RGD1309926 rno-miR-347 1241 1260 ACCCGCUGGGUCUCCCUGU- |||: |:||| |||:|| CGGGUC-CUCAGUGGGGCAC Sh3pxd2b; RGD1309926 rno-miR-349 197 235 -UCUCCAAUUCUGUC---------------GUCCCGAC ||||| :|||||| |:||||| GAGAGGGAGAGACAGAAGAUGGAGCCGCACCGGGGCUC Sh3pxd2b; RGD1309926 rno-miR-34a 566 598 UUGUUGG---------UCGAUUCUGUGACGGU- |||||| |||| ||| |||||| UACAACCUCAGGAGCAAGCUCCGAC-CUGCCAA Sh3pxd2b; RGD1309926 rno-miR-34b 425 448 GUUAG---UCGAUUAAUGUGACGGAU- ::|| :|||:| :||||||: AGGUCCAAGGCUGA----GCUGCCUGA Sh3pxd2b; RGD1309926 rno-miR-34c 1220 1243 -CGUUAGUCGAUUGAUGUGACGGA |||:| :||| : ||||| AGCAGU-GGCUGGUGGUUCUGCCG Sh3pxd2b; RGD1309926 rno-miR-351 1240 1271 -GUCCG--AGUU-UCCCGAGGAGU--CCCU- |:||: |||: :|||| |||: |||| CCGGGUCCUCAGUGGGGCACCUUCCUGGGAG Sh3pxd2b; RGD1309926 rno-miR-370 1238 1257 UUGGUCCAAGGUGGGGUCGUCCG :||:||| ||:|||::|| UGCCGGGU----CCUCAGUGGGG Sh3pxd2b; RGD1309926 rno-miR-378 687 710 UGUGUCCUGGACC----UCAGUCCUC :|||||||| :| ||||| ---AGGGACCUGGCCGUGGCCAGGAC Sh3pxd2b; RGD1309926 rno-miR-379 153 175 AUGCAAGGUA------UCAGAUGGU- |||| ||||||:|| ----CUCCACGCAAAGAGUCUAUCAU Sh3pxd2b; RGD1309926 rno-miR-383 63 92 -UCGGUG-UCA----GUGGAAGACUAGA- :||| || ||:|||| ||||| AGGCCCCAAGAAAGGCAUCUUCAGAUCUG Sh3pxd2b; RGD1309926 rno-miR-422b 414 433 -CGGAAGACUGAGGUUCAGGUCA ||| |||||:||||| GGCCCAU---CUCCAGGUCCAA- Sh3pxd2b; RGD1309926 rno-miR-424 427 448 -AGGUUUUGUACUUAACGAC-GAC- |||||::| ||| |||| ||| GUCCAAGGC-UGA---GCUGCCUGA Sh3pxd2b; RGD1309926 rno-miR-483 41 65 UGUUCUGCCCUCCCCUCCUCA-CU- ||||| ||| ||||||| || -AAAGACUGGAAGGGAGGAAAGGAG Sh3pxd2b; RGD1309926 rno-miR-485 762 777 CUUAAGUAGUG-CCGGUCGGAGA || |||||||| ------CUCCCAGGCCAGCCA-- Sh3pxd2b; RGD1309926 rno-miR-501 907 928 AAAGUGGGUC-CCUGUUUCCUAA | ||||| || ||:|||:| --CCUCCCAGAGGUCAGAGGGUC Sh3pxd2b; RGD1309926 rno-miR-540 101 127 GGUCCUAG------CUGGAGACUGGA |||||| ||:||| |||| ACAGGAUAUGAGGAGAUCUCGGACCC Sh3pxd2b; RGD1309926 rno-miR-7b 1162 1187 -UUGUUUUAGUGUUCA--GAAGGU- :||:||: ||| || |||||| AGACGAAGACACCAGCAGCUUCCAG Sh3pxd2b; RGD1309926 rno-miR-96 791 815 -UCG--UUUUUACACGAUCACGGUUU :|| ||:||||||| ||||| GGGCCCAAGAAUGUGCCUGUGCCU-- Sh3pxd2b; RGD1309926 rno-miR-98 1087 1111 -UUGUUAUGUUGAAUGAUGGAGU- :| || :||:||| || ||||| AGAGAAAGCAGCUUCCUUCCUCAA Sh3pxd2b; RGD1309926 rno-miR-99b 1220 1247 GCGUU-CCA---GCCAAGAU-GCCCAC |||: || :||||||: ||||| AGCAGUGGCUGGUGGUUCUGCCGGGUC Sh3pxd2b; RGD1309926 rno-let-7a 1274 1295 uugauauguuGGAUGAUGGAGu || |||||||| tggatcccttCCAACTACCTCc Sh3pxd2b; RGD1309926 rno-let-7b 1274 1295 uugguGUGUUGGAUGAUGGAGu | | || |||||||| tggatCCCTTCCAACTACCTCc Sh3pxd2b; RGD1309926 rno-let-7b 124 156 uuGGUGUG---------UUGGAU--GAUGGAGu |||||| |:|||| || |||| ccCCACACAGGAGGAGAAGCCTAGCCTCCCTCc Sh3pxd2b; RGD1309926 rno-let-7c 1277 1295 UUGGUAUGUUGGAUGAUGGAGu | || | || |||||||| ATCC---CTTCCAACTACCTCc Sh3pxd2b; RGD1309926 rno-let-7c 551 575 uUGGU--AUGU-UGGAUGAUGGAGU |||| |: | |:|||| |||||| gACCAAGTGGACATCTACAACCTCA Sh3pxd2b; RGD1309926 rno-let-7d 1275 1295 ugauacguuGGAUGAUGGAGa || |||||||| ggatcccttCCAACTACCTCc Sh3pxd2b; RGD1309926 rno-let-7d 1089 1109 ugaUACGUUGGAUGAUGGAGa | |||:|:| || |||| agaAAGCAGCTTCCTTCCTCa Sh3pxd2b; RGD1309926 rno-let-7e 1272 1295 uGAUAUGUUGGAG---GAUGGAGu ||: |: |:|| ||||||| gCTGGATCCCTTCCAACTACCTCc Sh3pxd2b; RGD1309926 rno-let-7e 1089 1109 ugaUAUGUUGGAGGAUGGAGU | :||:|:|||| ||||| agaAAGCAGCTTCCTTCCTCA Sh3pxd2b; RGD1309926 rno-let-7f 1273 1295 uugaUAUGUUA-GAUGAUGGAGu || | | | |||||||| ctggATCCCTTCCAACTACCTCc Sh3pxd2b; RGD1309926 rno-let-7f 555 575 UUGAUAUGUUAGAUGAUGGAGU || |: || |||||| |||||| AAGTGGAC-ATCTACAACCTCA Sh3pxd2b; RGD1309926 rno-miR-103 625 643 agUAUCGGGACAUGUUACGACGa | |||| || ||||||| agAAAGCC----ACCATGCTGCa Sh3pxd2b; RGD1309926 rno-miR-103 9 36 aGUAUCGGGACAUG-----UUACGACga |: |||: || || :|||||| aCGGAGCTGTGGACTCTGGGATGCTGtg Sh3pxd2b; RGD1309926 rno-miR-107 625 643 aCUAUCGGGACAUGUUACGACGa || |||| || ||||||| aGAAAGCC----ACCATGCTGCa Sh3pxd2b; RGD1309926 rno-miR-10a 1224 1246 guguuuaagCCUAGAUGUCCCAu || |||:| |||| gtggctggtGGTTCTGCCGGGTc Sh3pxd2b; RGD1309926 rno-miR-10b 1223 1244 uguguuuaagCCAAGAUGUCCC ||||||:| ||| agtggctggtGGTTCTGCCGGG Sh3pxd2b; RGD1309926 rno-miR-125a 524 547 GUGUCCAAUUUC--CCAGAGUCCCu | || | |:|| | ||||||| CCCAAGACAGAGCCAG-CTCAGGGt Sh3pxd2b; RGD1309926 rno-miR-125a 912 934 GUGUCCAAUUUCCCAGAGUCCCu || |||| |:|||||| ||| | CAGAGGTCAGAGGGTCACAGCGt Sh3pxd2b; RGD1309926 rno-miR-125b 523 547 aGUGUUCAAUCCC---AGAGUCCCu | |||| || | ||||||| cCCCAAGACAGAGCCAGCTCAGGGt Sh3pxd2b; RGD1309926 rno-miR-127 1261 1282 ucGGUUCGAGUCUGCCUAGGcu || :| :| :|||||| ttCCTGGGAGGGCTGGATCCct Sh3pxd2b; RGD1309926 rno-miR-127 1226 1249 uCGGU--UCGAGUCUGCCUAGGcu ||:: :|:|| | |||:||| gGCTGGTGGTTCTGCCGGGTCCtc Sh3pxd2b; RGD1309926 rno-miR-129* 1257 1275 uacGAAAAACCCCAUUCCCGAa ||| ||| :|||||| cacCTTCCTGG---GAGGGCTg Sh3pxd2b; RGD1309926 rno-miR-133a 1061 1086 UGUCGACCAACUUC--CCC----UGGUu |:|||||| ||| ||| |||| ATAGCTGG--CAAGGTGGGAGAAACCAg Sh3pxd2b; RGD1309926 rno-miR-133b 632 652 aUCGACCAACUUCCCCUGGUu | | | || |||||:||| cACCATGCTGCAGGGGGCCAt Sh3pxd2b; RGD1309926 rno-miR-134 906 930 GGGAG----ACCAGUUGGUCAGUGU ||||| |||||: :|||||| CCCTCCCAGAGGTCAGAGGGTCACA Sh3pxd2b; RGD1309926 rno-miR-135a 126 147 aGUGUAUCCUUAUUUUUCGGuau |||| ||||: :|:||||| cCACACAGGAG-GAGAAGCCtag Sh3pxd2b; RGD1309926 rno-miR-135b 127 147 GUGUAUCCUUACUUUUCGGuau |||| ||||: ||:||||| CACACAGGAG-GAGAAGCCtag Sh3pxd2b; RGD1309926 rno-miR-138 1161 1178 CUAAG-UGUUGUGGUCGa || | | :|||||||| GAGACGAAGACACCAGCa Sh3pxd2b; RGD1309926 rno-miR-139 5 21 ucuGUGCACGUGACAUCU |||| | :||||:|| ccgCACG-GAGCTGTGGA Sh3pxd2b; RGD1309926 rno-miR-140 536 557 GAUGGUAUCCCA-UUUUGGUga | | | ||||| ||:|||| CCAGCTCAGGGTGAAGACCAag Sh3pxd2b; RGD1309926 rno-miR-140* 814 847 ACAGGCACCAAGAUG----------GGACACCAu ||||| | | || |||||||| TGTCCAAGAAGCAACCCAGCAAAGACCTGTGGTc Sh3pxd2b; RGD1309926 rno-miR-140* 1225 1256 ACAGG-CACCAAGAUGG-------GACACCau || |: ||||||||:|| | |||| TGGCTGGTGGTTCTGCCGGGTCCTCAGTGGgg Sh3pxd2b; RGD1309926 rno-miR-141 1176 1201 gGUAGAAAUGGU------CUGUCACAAu || ||| ||| ||||||||| gCAGCTT--CCAGGAAGGGACAGTGTTt Sh3pxd2b; RGD1309926 rno-miR-15b 16 37 ACAUUUGGUACUACACGACgau |||::||: ||: ||||| TGTGGACTCTGGGATGCTGtgg Sh3pxd2b; RGD1309926 rno-miR-18 1243 1263 auAGACGUGAUCUACGUGGAAu || || |:|: ||||||| ggTCCTCAGTGGG-GCACCTTc Sh3pxd2b; RGD1309926 rno-miR-189 1227 1259 uGACUAU--AGUC-------GAGUCA-UCCGUG |||:|: || | |||||| :||||| gCTGGTGGTTCTGCCGGGTCCTCAGTGGGGCAC Sh3pxd2b; RGD1309926 rno-miR-193 686 708 gaCCCUGAAAC--AUCCGGUCaa ||||| | | |||||| gaGGGACCTGGCCGTGGCCAGga Sh3pxd2b; RGD1309926 rno-miR-200a 1173 1201 uGUAG-CAAUGGU------CUGUCACAAu || | | | ||| ||||||||| cCAGCAGCTTCCAGGAAGGGACAGTGTTt Sh3pxd2b; RGD1309926 rno-miR-204 1027 1047 uCCGUAUCCUACUGUUUCCcuu | ||| || |:|||||| cGACATTCGA-GGCAAAGGtgg Sh3pxd2b; RGD1309926 rno-miR-205 42 66 gUCUGA---GGCCACCUUACUUCCu ||||| || |||| |:||| aAGACTGGAAGGGAGGAAAGGAGGc Sh3pxd2b; RGD1309926 rno-miR-207 1188 1217 UUCCCU----C---CUCUCGGUCCUCUUCg |||||| | || : ||:||||||| AAGGGACAGTGTTTGAAGTCCGGGAGAAGa Sh3pxd2b; RGD1309926 rno-miR-207 430 455 uUCCCUCCUC-UCGG--UCCUCUUCg | || ||| ||| |||||||| cAAGGCTGAGCTGCCTGAGGAGAAGg Sh3pxd2b; RGD1309926 rno-miR-207 102 143 uUCC----CUCCUCU-----C---GG-------UCCUCUUCG ||| ||||||| | || ||||||||| cAGGATATGAGGAGATCTCGGACCCCACACAGGAGGAGAAGC Sh3pxd2b; RGD1309926 rno-miR-207 686 713 uUCCCU---CC--UCUCGGUCCUCUUCg ||||| || : :||||||| |:| gAGGGACCTGGCCGTGGCCAGGACAGGt Sh3pxd2b; RGD1309926 rno-miR-20b* 624 645 gUCUUCACG--AGUGUGACGUCa |||| || ||::|||||| gAGAA-AGCCACCATGCTGCAGg Sh3pxd2b; RGD1309926 rno-miR-214 789 816 GAC---GG-ACAGACACGGAC---GACA ||| || | |||||||| |||| CTGGGCCCAAGAATGTGCCTGTGCCTGT Sh3pxd2b; RGD1309926 rno-miR-24 418 442 gacaAGGAC---GACUUGACUCGgu ||| | | ::|||||| catcTCCAGGTCCAAGGCTGAGCtg Sh3pxd2b; RGD1309926 rno-miR-27a 17 38 CGCCU-UGAAUCGGUGACACuu |:||| || :| ::||||| GTGGACTCTGGGATGCTGTGgt Sh3pxd2b; RGD1309926 rno-miR-291-3p 1075 1101 CCGUGU---GUUUCACCUUCGU-GAAa || | | ||:|| | ||||| ||| GGGAGAAACCAGAGAGAAAGCAGCTTc Sh3pxd2b; RGD1309926 rno-miR-296 45 69 UGUCC-UAACUCC---CCCCCGGGa || || | |||| || ||||| ACTGGAAGGGAGGAAAGGAGGCCCc Sh3pxd2b; RGD1309926 rno-miR-298 1086 1114 CCUUCUU--GUC---GGGAGGAG--ACGG | :|||| ||| ||:||||| |||| GAGAGAAAGCAGCTTCCTTCCTCAATGCC Sh3pxd2b; RGD1309926 rno-miR-29c* 104 125 CUUGUGGUCCUCUUUAGCCAGu |:|:|: |||||| |||| | GGATATGAGGAGATCTCGGACc Sh3pxd2b; RGD1309926 rno-miR-300 1265 1288 cuuCUCUCGAAC--GGGAACGUau |||:||| | ||||| || tggGAGGGCTGGATCCCTTCCAac Sh3pxd2b; RGD1309926 rno-miR-30a-3p 28 52 CGACGUUUGUAGG---CUGACUUUC | ||| : :||| |||||:||| GATGCTGTGGTCCAAAGACTGGAAG Sh3pxd2b; RGD1309926 rno-miR-30d 1180 1204 GAAGGUCAGCCCCU---ACAAAugu ||||||| |||| ||||| CTTCCAGGAAGGGACAGTGTTTgaa Sh3pxd2b; RGD1309926 rno-miR-324-3p 1210 1227 ggUCGUCGUGGACCCCGUCACC || || || ||||||| ggAGAAGAACA----GCAGTGG Sh3pxd2b; RGD1309926 rno-miR-324-5p 7 33 uGUG----GUUACGGGAUCCCCUACGc ||| | :|| || ||||||| gCACGGAGCTGTGGACTCTGGGATGCt Sh3pxd2b; RGD1309926 rno-miR-326 897 917 ugACCUCCUUCCCGGGUCUCC || ||| |||||||| cgTGCAGGCCCCTCCCAGAGG Sh3pxd2b; RGD1309926 rno-miR-326 1069 1089 ugaCCUCCUUCCCGGGUCUCc || ||:|| |||||| caaGGTGGGAGAAACCAGAGa Sh3pxd2b; RGD1309926 rno-miR-327 748 769 uGGGA--GUACGGGGA-GUUCC |||| |: |||||| | ||| gCCCTGCCGAGCCCCTCCCAGG Sh3pxd2b; RGD1309926 rno-miR-328 1248 1276 uGCCUUCCCGU-------CUCUCCCGGUC | | :||||| |:||||||::| tCAGTGGGGCACCTTCCTGGGAGGGCTGG Sh3pxd2b; RGD1309926 rno-miR-331 1235 1256 AAGAU--CCUAUCCGGGUC-CCCg ||||: ||:| |:||| ||| TTCTGCCGGGT--CCTCAGTGGGg Sh3pxd2b; RGD1309926 rno-miR-336 36 57 uCUGAUCUAU-ACCUUCCCACu | | | | | |||||||| | gGTCCAAAGACTGGAAGGGAGg Sh3pxd2b; RGD1309926 rno-miR-339 1253 1278 aCUCG----AGGA-CCUCCUGUCCcu |:|| |||| |||||:| || gGGGCACCTTCCTGGGAGGGCTGGat Sh3pxd2b; RGD1309926 rno-miR-342 1047 1080 CUGCCCAC---GC-UAAAGA------CACACUCU | | || | || || || ||| |||| GTCTGGGGCCACGCATAGCTGGCAAGGTGGGAGA Sh3pxd2b; RGD1309926 rno-miR-343 193 206 aGACCCGUGUGCCUCCCUCU |||| | |||||||| gCTGG----A--GAGGGAGA Sh3pxd2b; RGD1309926 rno-miR-343 1064 1080 aGACCCGUGUGCCUCCCUCU |||| || || |||||| gCTGG---CAAGGTGGGAGA Sh3pxd2b; RGD1309926 rno-miR-344 1258 1280 UGCCAGUCCGAAACCGAUCUAGu || || | ||||:|||| ACCTTCCTGGGAGGGCTGGATCc Sh3pxd2b; RGD1309926 rno-miR-346 698 723 uCUCC-GUCC-GU-GAGUCCGUCUGU | || |||| || || |||||||| cGTGGCCAGGACAGGTCTGGCAGACA Sh3pxd2b; RGD1309926 rno-miR-347 664 693 aCCCGCU---------GGG--UCUCCCUGu || ||| ||| :||||||| cGGCCGAAGCTTCCTTCCCGGGGAGGGACc Sh3pxd2b; RGD1309926 rno-miR-349 210 234 UC-UCCAAUUC--UGUCGUCCCGAc || || | :|| :|| |:||||| AGAAGATGGAGCCGCACCGGGGCTc Sh3pxd2b; RGD1309926 rno-miR-34a 575 596 UUGUUGGUCGAUUCUGUGACGGU |: |:| |||| ||| |||||| AGGAGCAAGCTCCGAC-CTGCCA Sh3pxd2b; RGD1309926 rno-miR-34b 430 446 GUUAGUCGAUUAAUGUGACGGAu ||| :|||:| :|||||| CAA--GGCTGA----GCTGCCTg Sh3pxd2b; RGD1309926 rno-miR-34c 1221 1242 CGUUAGUCGAUUGAUGUGACGGa |||:| :|||::: :: ||||| GCAGT-GGCTGGTGGTTCTGCCg Sh3pxd2b; RGD1309926 rno-miR-351 520 547 guccGAGUU---UCCCGAG--GAGUCCCu | ||| || || | ||||||| ttccCCCAAGACAGAGC-CAGCTCAGGGt Sh3pxd2b; RGD1309926 rno-miR-351 1231 1255 guCCGAGUUUCCCGAGGAGUC-CCu ||:|| : || ||||||| || gtGGTTCTGCCGGGTCCTCAGTGGg Sh3pxd2b; RGD1309926 rno-miR-351 542 579 GUCCGA------GUUUCCC----GA----GGAGUCCcu |||| | |||: || || ||||||| CAGGGTGAAGACCAAGTGGACATCTACAACCTCAGGag Sh3pxd2b; RGD1309926 rno-miR-378 706 727 ugUGUCCUGGACC-UCAGUCCUc ||||| :|||| || ||||| ggACAGG-TCTGGCAGACAGGAt Sh3pxd2b; RGD1309926 rno-miR-379 156 173 aUGCAAG-GUAUCAGAUGGU ||| | | ||||||:|| cACG--CAAAGAGTCTATCA Sh3pxd2b; RGD1309926 rno-miR-383 64 90 uCGGUG-----UCAGUGGAAGACUAGA ||| | || ||:|||| ||||| gGCCCCAAGAAAGGCATCTTCAGATCT Sh3pxd2b; RGD1309926 rno-miR-412 527 552 UGCCGAUCAC---CUGGU-CCACUUCa | | | || | | :|| ||||||| AAGAC-AGAGCCAGCTCAGGGTGAAGa Sh3pxd2b; RGD1309926 rno-miR-422b 408 433 cGGAAGAC---U-GAGGUUCAGGUca ||| | | | |||||:||||| aCCTCCGGCCCATCTCCAGGTCCAag Sh3pxd2b; RGD1309926 rno-miR-424 428 445 AGGUUUUGUACUUAACGACGac |||||::| ||| ||||| TCCAAGGC-TGA---GCTGCct Sh3pxd2b; RGD1309926 rno-miR-483 45 67 UGUUCUGCCCUCCCCUCCUCacu || :|| |||||| ||||| ACTGGAAGGGAGGAAAGGAGgcc Sh3pxd2b; RGD1309926 rno-miR-485 756 778 CUUAAGUAGUG-CCGGUCGGaga ||: | || | |||||||| GAGCCCCTCCCAGGCCAGCCaag Sh3pxd2b; RGD1309926 rno-miR-501 905 927 aaaGUGGGUC-CCUGUUUCCUAa | ||||| || ||:|||:| cccCTCCCAGAGGTCAGAGGGTc Sh3pxd2b; RGD1309926 rno-miR-540 109 126 ggUCCUAGCUGGAGACUGGa |||| ||:||| |||| tgAGGA--GATCTCGGACCc Sh3pxd2b; RGD1309926 rno-miR-7b 1163 1185 uUGUUUUAGU-GU--UCAGAAGGU ||:||: || || || |||||| gACGAAGACACCAGCAG-CTTCCA Sh3pxd2b; RGD1309926 rno-miR-96 794 816 ucGUUUUUACACGAUCACGGuuu |||:||||||| ||||| ccCAAGAATGTGCCTGTGCCtgt Sh3pxd2b; RGD1309926 rno-miR-98 1273 1295 uuguUAUGUUGAA---UGAUGGAGu || | ||| |||||||| ctggATCC--CTTCCAACTACCTCc Sh3pxd2b; RGD1309926 rno-miR-98 1088 1109 uUGUUAUGUUGAAUGAUGGAGU | || :||:||| || ||||| gAGAAAGCAGCTTCCTTCCTCA Sh3pxd2b; RGD1309926 rno-miR-99b 1226 1246 gCGUUCCAGCCAAGAU-GCCCAc || ||| ||||||: ||||| gGC-TGGT-GGTTCTGCCGGGTc Sh3pxd2b; RGD1309926 rno-let-7a 1288 1295 ------------------UUGAUAUGUU---GGAUGAUGGAGU ::||: || |||||||| GGGGCACCUUCCUGGGAGGGCUGGAUCCCUUCCAACUACCUCC Sh3pxd2b; RGD1309926 rno-let-7b 1288 1295 ------------------UUGGUGUGUU---GGAUGAUGGAGU ::|:: |: || |||||||| GGGGCACCUUCCUGGGAGGGCUGGAUCCCUUCCAACUACCUCC Sh3pxd2b; RGD1309926 rno-let-7c 1288 1295 ------------------UUGGUAUGUU---GGAUGAUGGAGU ::|:: || |||||||| GGGGCACCUUCCUGGGAGGGCUGGAUCCCUUCCAACUACCUCC Sh3pxd2b; RGD1309926 rno-let-7d 1288 1295 -------------------UGAUACGUU---GGAUGAUGGAGA :||: || |||||||| GGGGCACCUUCCUGGGAGGGCUGGAUCCCUUCCAACUACCUCC Sh3pxd2b; RGD1309926 rno-let-7e 1288 1295 -------------------UGAUAUGUUGGAG---GAUGGAGU :||: |: |:|| ||||||| GGGGCACCUUCCUGGGAGGGCUGGAUCCCUUCCAACUACCUCC Sh3pxd2b; RGD1309926 rno-let-7f 1288 1295 ------------------UUGAUAUGUU--AGA-UGAUGGAGU ::||: || |||||||| GGGGCACCUUCCUGGGAGGGCUGGAUCCCUUCCAACUACCUCC Sh3pxd2b; RGD1309926 rno-miR-103 636 643 AGUA------------------------UCGGGACAUGUUACGACGA |||| || ||||||| UCAAGAGAAAGCCUUAUUGGAUGGAGAAAGCC----ACCAUGCUGCA Sh3pxd2b; RGD1309926 rno-miR-107 636 643 A------------------------CUAUCGGGACAUGUUACGACGA || |||| || ||||||| UCAAGAGAAAGCCUUAUUGGAUGGAGAAAGCC----ACCAUGCUGCA Sh3pxd2b; RGD1309926 rno-miR-125a 540 547 G------------------------UGUCCAAUUUCCCAGAGUCCCU |||| ||||||| GCCCAAACCAACUCCUUCCCCCAAGACAGAGCCAG----CUCAGGGU Sh3pxd2b; RGD1309926 rno-miR-125b 540 547 AGU------------------GUUCAA--UCCCA-GAGUCCCU |||| || ||||||| GCCCAAACCAACUCCUUCCCCCAAGACAGAGCCAGCUCAGGGU Sh3pxd2b; RGD1309926 rno-miR-138 1171 1178 -------------------------CUAAGUG-UUGUGGUCGA || :|||||||| UAUGUGGCCGUGGCCAACUUUGAAGGAGACGAAGACACCAGCA Sh3pxd2b; RGD1309926 rno-miR-140* 840 847 ---------ACAGGCACCAAGAUG----------GGACACCAU ||||| | || |||||||| GCCUGUGCCUGUCCAAGAAGCAACCCAGCAAAGACCUGUGGUC Sh3pxd2b; RGD1309926 rno-miR-141 1194 1201 --------------GGUA---GAAAUGG------UCUGUCACAAU ||| ||| || :||||||||| AGGAGACGAAGACACCAGCAGCUU--CCAGGAAGGGACAGUGUUU Sh3pxd2b; RGD1309926 rno-miR-18 1256 1263 A----------------------UAGACGUGAUCUACGUGGAAU :|| || |:|: ||||||| GCAGUGGCUGGUGGUUCUGCCGGGUCCUCAGUGGG-GCACCUUC Sh3pxd2b; RGD1309926 rno-miR-200a 1194 1201 --------------------UGUAGCAA-UGGUCUGUCACAAU :| || | :||||||||| AGGAGACGAAGACACCAGCAGCUUCCAGGAAGGGACAGUGUUU Sh3pxd2b; RGD1309926 rno-miR-207 136 143 U-UCC----CUCCUCUCGG---------------UCCUCUUCG ||| ||||||| |: ||||||||| ACAGGAUAUGAGGAGAUCUCGGACCCCACACAGGAGGAGAAGCC Sh3pxd2b; RGD1309926 rno-miR-207 448 455 ------------------UUCCCUCCUCU-CGG--UCCUCUUCG |||| ||| ||| |||||||| CGGCCCAUCUCCAGGUCCAAGGCU-GAGCUGCCUGAGGAGAAGG Sh3pxd2b; RGD1309926 rno-miR-207 1210 1217 -------------UUCCCU--C-CU--CU-C-GGUCCUCUUCG |||||| | | || | ||:||||||| AGCAGCUUCCAGGAAGGGACAGUGUUUGAAGUCCGGGAGAAGA Sh3pxd2b; RGD1309926 rno-miR-326 910 917 UG----------------------ACCUCCUUCCCGGGUCUCC || ||| |||||||| AAAACCUCCUCAUCGCCAUUGUCGUGCAGGCCCCUCCCAGAGGU Sh3pxd2b; RGD1309926 rno-miR-343 199 206 A-----------------------------GACCCGUGUGCCUCCCUCU |||| |||||||| GAGUCUAUCAUCAAGUCUGAAGAAGAGUUGCUGGA------GAGGGAGAG Sh3pxd2b; RGD1309926 rno-miR-346 716 723 ----UCUCC--------------GUCCG--UGAGUCCGUCUGU :|||| |||| : || |||||||| CCGGGGAGGGACCUGGCCGUGGCCAGGACAGGUCUGGCAGACAG Sh3pxd2b; RGD1309926 rno-miR-347 686 693 AC------------CCG-CU---------GGG--UCUCCCUGU ||| || ||| :||||||| AUGACACAGCCCUCGGCCGAAGCUUCCUUCCCGGGGAGGGACC Sh3pxd2b; RGD1309926 rno-miR-351 540 547 --------------------------GUC-CGAGUUUCCCGAGGAGUCCCU ||| || ||: ||||||| GCCCAAACCAACUCCUUCCCCCAAGACAGAGC-CAG-------CUCAGGGU Sh3pxd2b; RGD1309926 rno-miR-412 545 552 UGC----------------------CGAUCACCUGGUCCACUUCA || || :||||||| AACCAACUCCUUCCCCCAAGACAGAGCCAGCUCA--GGGUGAAGA Sh3pxd2b; RGD1309926 rno-miR-98 1288 1295 ------------------UUGUUAUGUUGAA---UGAUGGAGU ::| |: ||| |||||||| GGGGCACCUUCCUGGGAGGGCUGGAUCCCUUCCAACUACCUCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sh3pxd2b RAID00016784 rno-miR-3557-3p miRNA MIMAT0017820 Sh3pxd2b mRNA 303021 Prediction 0.1828 Sh3pxd2b RAID00246522 rno-miR-125a-5p miRNA MIMAT0000829 Sh3pxd2b mRNA 303021 Prediction 0.1828 Sh3pxd2b RAID00821944 rno-miR-218a-1-3p miRNA MIMAT0017162 Sh3pxd2b mRNA 303021 Prediction 0.1828 Sh3pxd2b RAID01237874 rno-miR-351-5p miRNA MIMAT0000608 Sh3pxd2b mRNA 303021 Prediction 0.1828 Sh3pxd2b RAID03755951 rno-miR-125b-5p miRNA MIMAT0000830 Sh3pxd2b mRNA 303021 Prediction 0.1828 Sh3pxd2b RAID03851756 rno-miR-6332 miRNA MIMAT0025073 Sh3pxd2b mRNA 303021 Prediction 0.1828