DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ubtd2; rCG_35218 rno-let-7d 1 19 UGAUACG-UUGGAUGAU-GGAGA || ::|||:| |||| -----GCUGGCCUGCCUUCCUCC Ubtd2; rCG_35218 rno-let-7e 1 19 UGAUAUGUUGGA-GGAUGGAGU :||: :||| ||| |||| GCUG----GCCUGCCUUCCUCC Ubtd2; rCG_35218 rno-miR-127 8 27 UCGGUUCGAGUCUGCCUAGGCU ||| ||| :||| ||| UGCCUUCCUCC-GCGG-UCCC- Ubtd2; rCG_35218 rno-miR-133a 138 159 UGUCGACCAACUUCCCCUGGUU- || ||| ||| || |||||| CCAUCUG--UGAUGGAGACCAAC Ubtd2; rCG_35218 rno-miR-133b 141 159 AUCGACCAACUUCCCCUGGUU- ||| ||| || |||||| --UCUG--UGAUGGAGACCAAC Ubtd2; rCG_35218 rno-miR-136 136 154 -AGGUAGUAGUUUUGUUUACCUCA |||||| :|||||| UUCCAUCUGU------GAUGGAGA Ubtd2; rCG_35218 rno-miR-138 325 339 CUAAGUGUUGUGGU-CGA |||:||||| || ----AACAGCACCAAGCA Ubtd2; rCG_35218 rno-miR-146 94 119 UUGGGUAC---CUUAAGUCAAGAGU- ||:||| |:|||:|||||| | -CCCUAUGAGUGGAUUUAGUUCUGAG Ubtd2; rCG_35218 rno-miR-151* 1 24 AUGAUCUGACACUC-GAGGAGCU- :||:| ||| |||| ||: -GCUGGCCUGCCUUCCUCCGCGGU Ubtd2; rCG_35218 rno-miR-185 6 21 CUUGACGGAAAGAGAGGU- ||||| ||| ||||: --CCUGCC-UUC-CUCCGC Ubtd2; rCG_35218 rno-miR-189 255 280 -UGACUAUAGUCGAGUCAU--CCGUG || :||||| ||| ||| ||| AACAUGUAUCAACUCUGUAAUGGCU- Ubtd2; rCG_35218 rno-miR-214 4 25 GACGGACAGACACGGA--CGACA- ||||| || ||| || || -GGCCUGCCUU--CCUCCGCGGUC Ubtd2; rCG_35218 rno-miR-291-5p 115 151 UCUCUCCC--------------GGAGGUGAA-ACUAC- |||| |:||||: ||||| --UGAGGAAUUACCAGUGAAAACUUCCAUCUGUGAUGG Ubtd2; rCG_35218 rno-miR-298 3 22 CCUUCUUGUCGGGAGGAGACGG |: | |||:||||| || ---UGGCCUGCCUUCCUCCGCG Ubtd2; rCG_35218 rno-miR-363-5p 118 146 -UUUAACGUAGCACU-----AGGUGGGC- :|||| | |||| ||||:|:| GGAAUUACCA-GUGAAAACUUCCAUCUGU Ubtd2; rCG_35218 rno-miR-376c 127 148 GCACUUUA-AAGG-AGAUACAA |||||| |||| |||:|| AGUGAAAACUUCCAUCUGUGA- Ubtd2; rCG_35218 rno-miR-422b 8 27 -CGGAAGACUGAGGU-UCAGGUCA |||||| ||||: :|||| UGCCUUC---CUCCGCGGUCCC-- Ubtd2; rCG_35218 rno-miR-485 171 189 CUUAAGUAGUG-C-CGGUCGGAGA- ||| | |||||||||| -------ACACAGAGCCAGCCUCUG Ubtd2; rCG_35218 rno-miR-541 2 30 ACACUGGUUGUA-----GUCUUAGGGAA- ||:|| :| |: ::|||||| -CUGGCCUGCCUUCCUCCGCGGUCCCUUG Ubtd2; rCG_35218 rno-miR-127 15 36 ucGGUUCGAGUCUGCCUAGGCu ||: | || :|| |||| ctCCGCGGTCCCTTGGCTCCGc Ubtd2; rCG_35218 rno-miR-133b 139 157 aUCGACCAACUUCCCCUGGUU | ||| ||| || |||||| cATCTG--TGATGGAGACCAA Ubtd2; rCG_35218 rno-miR-136 137 153 AGGUAGUAGUUUUGUUUACCUCa |||||| : :|||||| TCCATCTGT------GATGGAGa Ubtd2; rCG_35218 rno-miR-138 321 338 cuaagUGUUGUGG-UCGa |||:|||| ||| caaaaACAGCACCAAGCa Ubtd2; rCG_35218 rno-miR-146 93 117 uuGGGUAC---CUUAAGUCAAGAgu ||:||| |:|||:|||||| tcCCTATGAGTGGATTTAGTTCTga Ubtd2; rCG_35218 rno-miR-18 324 343 aUAGACGUGAUCUACGUGGAAu | | |||| | | ||||||| aAACAGCACCA-A-GCACCTTt Ubtd2; rCG_35218 rno-miR-185 4 19 CUUGACGGAAAGAGAGGu |: ||||| ||| |||| GGCCTGCC-TTC-CTCCg Ubtd2; rCG_35218 rno-miR-189 256 280 UGACUAUAGUCGAGUCAU--CCGug || :||||| ||| ||| ||| ACATGTATCAACTCTGTAATGGCtg Ubtd2; rCG_35218 rno-miR-214 1 13 gacggacaGACACGGACGaca ||| |||||| -------gCTG-GCCTGCctt Ubtd2; rCG_35218 rno-miR-291-5p 127 149 UCUCUCCCGGAGGU-GAAACUAC || || |:|||| || ||||| AGTGAAAACTTCCATCTGTGATG Ubtd2; rCG_35218 rno-miR-298 1 21 ccuuCUUGUCGGGAGGAGACGg |: | |||:||||| || -gctGGCCTGCCTTCCTCCGCg Ubtd2; rCG_35218 rno-miR-363-5p 119 144 uUUAACGUAG-CACU-----AGGUGGGC |||| | | |||| ||||:|:| gAATTAC--CAGTGAAAACTTCCATCTG Ubtd2; rCG_35218 rno-miR-376c 127 148 gCAC-UUUAAAGG-AGAUACaa ||| ||| |||| |||:|| aGTGAAAACTTCCATCTGTGat Ubtd2; rCG_35218 rno-miR-422b 9 28 CGGAAGACUGAGGU-UCAGGuca |||||| ||||: :|||| GCCTTC---CTCCGCGGTCCctt Ubtd2; rCG_35218 rno-miR-485 164 187 cUUAAGUAGUG-C-CGGUCGGAGA ||| | ||| | |||||||||| tAATAAAACACAGAGCCAGCCTCT Ubtd2; rCG_35218 rno-miR-541 6 28 acACUGGUUGUAGUC-UUAGGGAA || || | || | ::|||||| ccTG-CCTTCCTCCGCGGTCCCTT Ubtd2; rCG_35218 rno-miR-18 336 343 AUAGA-----------------------CGUGAUCUACGUGGAAU |||| ||||||| UAAACAGACACUAAACCCAUCAAAAACAGCACCAA--GCACCUUU Ubtd2; rCG_35218 rno-miR-485 180 187 CUUAAGUA-------------------GUG-C-CGGUCGGAGA ||| | |||||||||| UGAUGGAGACCAACAAAAAUAAUAAAACACAGAGCCAGCCUCUG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubtd2 RAID00054236 rno-miR-181b-2-3p miRNA MIMAT0017140 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00142659 rno-miR-653-3p miRNA MIMAT0017361 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00249224 rno-miR-3557-3p miRNA MIMAT0017820 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00274262 rno-miR-370-3p miRNA MIMAT0003122 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00299382 rno-miR-466b-3p miRNA MIMAT0017285 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00548604 rno-miR-6333 miRNA MIMAT0025074 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00570940 rno-miR-26b-5p miRNA MIMAT0000797 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00598943 rno-miR-759 miRNA MIMAT0012856 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00715833 rno-miR-3590-3p miRNA MIMAT0017890 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00772599 rno-miR-1956-3p miRNA MIMAT0035736 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID00828562 rno-miR-471-3p miRNA MIMAT0017310 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID01110794 rno-miR-190b-3p miRNA MIMAT0017298 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID01203113 rno-miR-632 miRNA MIMAT0012837 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID01400640 rno-miR-425-5p miRNA MIMAT0005314 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID01472745 rno-miR-667-5p miRNA MIMAT0017369 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID01499944 rno-miR-140-3p miRNA MIMAT0000574 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID01508537 rno-miR-3085 miRNA MIMAT0017805 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID01550884 rno-miR-878 miRNA MIMAT0005286 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID02176628 rno-miR-465-5p miRNA MIMAT0012850 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID02232579 rno-miR-449c-3p miRNA MIMAT0017804 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID02313405 rno-miR-26a-5p miRNA MIMAT0000796 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID02653352 rno-miR-18a-5p miRNA MIMAT0000787 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID02917503 rno-miR-760-3p miRNA MIMAT0005337 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID02990042 rno-miR-6216 miRNA MIMAT0024856 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID03307322 rno-miR-149-5p miRNA MIMAT0035726 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID03328748 rno-miR-154-5p miRNA MIMAT0000856 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID03368487 rno-miR-218b miRNA MIMAT0017838 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID03572241 rno-miR-3065-3p miRNA MIMAT0017840 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID03574358 rno-miR-378a-5p miRNA MIMAT0003378 Ubtd2 mRNA 287178 Prediction 0.1828 Ubtd2 RAID03802539 rno-miR-883-5p miRNA MIMAT0017294 Ubtd2 mRNA 287178 Prediction 0.1828