DNA & RNA Element - miRNAMap |
Gene Name | Mature miRNA | Target Start | Target End | miRNA 3-5 | Alignment | Target 5-3 |
Sh3kbp1 | rno-let-7b | 227 | 259 | -UUGGUGUGUUGGAU---------GAUGGAGU | |:||| ||: ||| ||||||: | GAGCCAAACGUGCUAAAGGCUUUUCUACCUUG |
Sh3kbp1 | rno-let-7c | 227 | 259 | -UUGGUAUGUUGGAU---------GAUGGAGU | |:||| ||: ||| ||||||: | GAGCCAAACGUGCUAAAGGCUUUUCUACCUUG |
Sh3kbp1 | rno-let-7e | 926 | 950 | UGAUAUGU---UGGAGGAUGGAGU | :|| || :|:||||:|||: | GUUAAACCCCUGCUUCCUGCCUUU |
Sh3kbp1 | rno-let-7f | 648 | 668 | UUGAUAUGUUAGAU-GAUGGAGU | ||:|:| ||| ||||| | -UCUGUGCCUUCUUUCUACCA-- |
Sh3kbp1 | rno-let-7i | 464 | 488 | -UGUCG----UGUUUGAUGAUGGAGU | :||| :|||| |:||:||| | UGCAGAUGGAGCAAA-UGCUGCCUG- |
Sh3kbp1 | rno-miR-103 | 431 | 468 | AGUAUCGGGACAUGUU--------------ACGACGA | |:|||:| :||| |||||| | ACGUAGUCAGAAGCAAGUGCCUCACUCACUUGCUGCA |
Sh3kbp1 | rno-miR-127 | 784 | 811 | -UCGG-UUCGAG---UCUGCC-UAGGCU | |||| ||| || ||| || ||||| | UAGCCAAAGGUCCUAAGA-GGAAUCCGC |
Sh3kbp1 | rno-miR-128a | 812 | 848 | -UUUUCU--CUGG--------CCAAG--UGACACU- | |:||| |:|| ||| :|||||| | GAGAAGUCUGGCCUGCUCUUUGGUACCAGCUGUGAC |
Sh3kbp1 | rno-miR-128b | 813 | 848 | CUUUCU--CUGG--------CCAAG--UGACACU- | :||| |:|| ||| :|||||| | AGAAGUCUGGCCUGCUCUUUGGUACCAGCUGUGAC |
Sh3kbp1 | rno-miR-136 | 449 | 476 | AGGUAGU-AGUUU----UGUUUACCUCA | || ||| ||| :||:|||||| | GCC-UCACUCACUUGCUGCAGAUGGAGC |
Sh3kbp1 | rno-miR-140* | 816 | 838 | ACAGGCACCAAGAUGGGACACCAU- | |||:| ||:|:|| ||||| | AGUCUGGC---CUGCUCUUUGGUAC |
Sh3kbp1 | rno-miR-148b | 678 | 700 | UGUUUC-AAGACACUACGU-GACU | ::|| ||:||||||||| || | -UGGAGCUUUUGUGAUGCAGCUA- |
Sh3kbp1 | rno-miR-151 | 794 | 824 | -GGAG-UUCCU----CGGAG--UCAGAUCA | ||| :|||| ||: |||||:| | UCCUAAGAGGAAUCCGCUGAGAAGUCUGGC |
Sh3kbp1 | rno-miR-151* | 748 | 779 | AUGAUCU-----GACAC-----UCGAGGAGCU | |||||| |||| ||||:||| | CACUAGAGGCCACUGUCUUCACAGCUUCUCU- |
Sh3kbp1 | rno-miR-18 | 399 | 419 | AUAGAC-GUGAUCUACGUGGAAU | |:|| ||| |||||| ||| | -UUUUGUCAC-AGAUGCCCCUA- |
Sh3kbp1 | rno-miR-184 | 186 | 211 | UGGGAAUAGUCAAGAGG---CAGGU- | ||| |: ||| ||| ||||: | UCCCAUGGU-GUUGUCCUGGGUCCGG |
Sh3kbp1 | rno-miR-191 | 820 | 858 | -UC-GACGA-AAACC----------CU---AAGGCAAC | :| ||||| ||||| || ||||||| | UGGCCUGCUCUUUGGUACCAGCUGUGACUUUUCCGUUU |
Sh3kbp1 | rno-miR-200a | 194 | 217 | UGUAGCAAU-----GGUCUGUCACAAU | :|:|| ||:| ||||| | -UGUUGUCCUGGGUCCGG-CAGUGG-- |
Sh3kbp1 | rno-miR-207 | 789 | 820 | -UUCC------CUCCUCU--CGGUCCUCUUCG- | |||| ||||| ||: ||||||: | AAAGGUCCUAAGAGGAAUCCGCU--GAGAAGUC |
Sh3kbp1 | rno-miR-20b* | 437 | 470 | -GUCU----UCAC-GAGUG------UGACGUCA | |||| |||| ||||| :|||||| | UCAGAAGCAAGUGCCUCACUCACUUGCUGCAGA |
Sh3kbp1 | rno-miR-214 | 808 | 830 | GACGGA----CAGACACGGACGACA | ||: ||||| ||||||| | -CGCUGAGAAGUCUG-GCCUGCUC- |
Sh3kbp1 | rno-miR-24 | 200 | 234 | -GACA-AGGA------CGAC-UUGA--CUCGGU- | ||| ||| |:|| :|:| |||||| | CCUGGGUCCGGCAGUGGUUGUGAUUUAGAGCCAA |
Sh3kbp1 | rno-miR-290 | 114 | 130 | UUUUUCACGGGGGUAUCAAACUC | |||:|||: |||||| | ----CGUGUCCCU---GUUUGAA |
Sh3kbp1 | rno-miR-291-5p | 811 | 837 | UCUCUC----CCGGAGGUGAAACUAC | |||| ||||| | |||||:| | UGAGAAGUCUGGCCUGCUCUUUGGUA |
Sh3kbp1 | rno-miR-292-3p | 807 | 839 | UGUGAGUUUU-GGACCG---------CCGUGAA | |:|| |:|| :||||| ||:|| | CCGCUGAGAAGUCUGGCCUGCUCUUUGGUACC- |
Sh3kbp1 | rno-miR-292-5p | 407 | 429 | GUUUUCU-CGGGGGUCA--AACUCA | ||| |||||:||| ||| | | ---CAGAUGCCCCUAGUGUUUGUGC |
Sh3kbp1 | rno-miR-298 | 529 | 558 | CCUUCUUGUC-GGGAGGA-----GACGG- | ||:| || ||:||| ||||| | UGAGGUCCAAUCCUUCCCUUUCCCUGCCA |
Sh3kbp1 | rno-miR-29a | 461 | 485 | UUGGCUAAAGUCUACC------ACGAU- | :|:| ||||||| ||||: | UGCUG----CAGAUGGAGCAAAUGCUGC |
Sh3kbp1 | rno-miR-29c | 178 | 200 | UGGCU---AAAGUUUACCACGAU- | || |||| ||||||:|: | --AGACUCUUUCCCAUGGUGUUGU |
Sh3kbp1 | rno-miR-30a-5p | 858 | 882 | GAAGGUC--AGCUCCUACAAAUGU- | ||| | |:|||| |||| ||: | -CUCCUGCUUUGAGGUUGUUCACGA |
Sh3kbp1 | rno-miR-320 | 651 | 689 | AAGCGGGAGAGU-----UGGG----------UCGAAAA- | :|||:|||: |||| ||||||| | -GUGCCUUCUUUCUACCACCCUUUUGAUUGGAGCUUUUG |
Sh3kbp1 | rno-miR-324-3p | 187 | 218 | -GGU-CGUCGU--GGACCC----CGUCACC- | ||| | |: |||||| ||||||| | CCCAUGGUGUUGUCCUGGGUCCGGCAGUGGU |
Sh3kbp1 | rno-miR-330 | 462 | 496 | AGAGACGUC--------------CGGGACACGAAACG- | |||||| |||: ||||||: | --GCUGCAGAUGGAGCAAAUGCUGCCUG--GCUUUGUA |
Sh3kbp1 | rno-miR-333 | 139 | 163 | -UUUUCAUU--GAUCGUGUGGUG- | |||||| :||||||| ||| | CAAAAGUCUUCUUAGCACAACACA |
Sh3kbp1 | rno-miR-339 | 192 | 218 | ACUCG--AGGACCUC--CUGUC-CCU | | |: ||||||: |:||| || | GGUGUUGUCCUGGGUCCGGCAGUGGU |
Sh3kbp1 | rno-miR-345 | 190 | 214 | CGUGACCUGAUC----CCCA-GUCGU- | ||| | |||| |:||| | ---AUGGUGUUGUCCUGGGUCCGGCAG |
Sh3kbp1 | rno-miR-346 | 266 | 290 | UCUCCGUC---CG--UGAGUCCGUCUGU | |||| | |||||||||| | --CGGCAAAAUGAAAACUCAGGCAGU-- |
Sh3kbp1 | rno-miR-34c | 432 | 488 | -CGUUAGUC--------------GAU----UGAUG----- UGACGGA | |:|:|||| || :||:| :|||||| | CGUAGUCAGAAGCAAGUGCCUCACUCACUUGCUGCAGAUGGAGCAAAUGCUGCCUG |
Sh3kbp1 | rno-miR-351 | 785 | 806 | GUCCGAGUUUCCCGAGGAGUC-CCU- | || |||||| |||| || ||| | --AGC-CAAAGG--UCCUAAGAGGAA |
Sh3kbp1 | rno-miR-370 | 754 | 796 | -UUGGUC-CA------------AG-GUGGGGUCG---UCCG | ::||| || || |||||:||| |||: | AGGCCACUGUCUUCACAGCUUCUCUCACCCUAGCCAAAGGUC |
Sh3kbp1 | rno-miR-378 | 188 | 215 | UGUGUC-CU---GGACCUCAGUCC-UC- | ||::| | ||||| ||| || || | CCAUGGUGUUGUCCUGG-GUCCGGCAGU |
Sh3kbp1 | rno-miR-382 | 744 | 777 | CUUAGGUGGUGCU-------------UGUUGAAG- | :|||||:| || |||:|||| | -UGUCCACUA-GAGGCCACUGUCUUCACAGCUUCU |
Sh3kbp1 | rno-miR-497 | 457 | 489 | AUGUUUGGUGUC-AC-------ACGAC-GAC- | || :|::||| || ||||| ||| | CACUUGCUGCAGAUGGAGCAAAUGCUGCCUGG |
Sh3kbp1 | rno-miR-501 | 777 | 806 | AAAGUGGG-------UCCCUG--UUUCCUAA | |||||| ||| |:|||| | -CUCACCCUAGCCAAAGGUCCUAAGAGGAA- |
Sh3kbp1 | rno-miR-540 | 800 | 827 | GGUCC-UAGCUGG------AGACUGGA- | ||| ||| :|: ||||:||| | -GAGGAAUCCGCUGAGAAGUCUGGCCUG |
Sh3kbp1 | rno-miR-542-3p | 376 | 410 | AAGUCAA------------UAGUU--AGACAGUGU- | :||| |||: |:||||||| | --UGGUUUUUUUUUUUUAAAUCGUGUUUUGUCACAG |
Sh3kbp1 | rno-miR-7 | 127 | 152 | -UUGUUUUA-GUGA--UCAGAAGGU | |||| ||| |||||||: | GAACAUUCAGCACAAAAGUCUUCUU |
Sh3kbp1 | rno-miR-7b | 127 | 152 | -UUGUUUUA-GUGU--UCAGAAGGU | |||| |||| |||||||: | GAACAUUCAGCACAAAAGUCUUCUU |
Sh3kbp1 | rno-miR-96 | 208 | 236 | -UCGUUUUU-ACACG--AUCACGGUUU- | :|||: |||| ||| |||||| | CGGCAGUGGUUGUGAUUUAGAGCCAAAC |
Sh3kbp1 | rno-let-7b | 228 | 258 | UUGGUGUGUUGGAU---------GAUGGAgu | |:||| ||: ||| |||||| | AGCCAAACGTGCTAAAGGCTTTTCTACCTtg |
Sh3kbp1 | rno-let-7c | 228 | 258 | UUGGUAUGUUGGAU---------GAUGGAgu | |:||| ||: ||| |||||| | AGCCAAACGTGCTAAAGGCTTTTCTACCTtg |
Sh3kbp1 | rno-let-7e | 929 | 949 | ugauauGUUGGAGGAUGGAgu | | :|:||||:||| | aaacccCTGCTTCCTGCCTtt |
Sh3kbp1 | rno-let-7f | 647 | 669 | UUGAUAUGUUAG-AUGAUGGAGu | | ||:|:| || | ||||| | | ATCTGTGCCTTCTTTCTACCACc |
Sh3kbp1 | rno-let-7i | 469 | 488 | UGUCGUGUUUGAUGAUGGAgu | |::| :|||| |:||:||| | ATGGAGCAAA-TGCTGCCTgg |
Sh3kbp1 | rno-miR-103 | 456 | 485 | AGU-AUCGG-G---ACAU-G-UUACGACGa | ||| | ||: | || | | |||||||| | TCACTTGCTGCAGATGGAGCAAATGCTGCc |
Sh3kbp1 | rno-miR-107 | 467 | 485 | aCUAUCGGGACAUGUUACGACGa | |||:| | | |||||||| | aGATGG---AGCA-AATGCTGCc |
Sh3kbp1 | rno-miR-127 | 785 | 810 | UCGGUU--C--GAGUCUGCCUAGGCu | |||||| | || ||| | ||||| | AGCCAAAGGTCCTAAGAGGAATCCGc |
Sh3kbp1 | rno-miR-128a | 813 | 846 | UUUUC--UCUGG--------CCA-AGU-GACACU | |:||| |:|| ||| || |||||| | AGAAGTCTGGCCTGCTCTTTGGTACCAGCTGTGA |
Sh3kbp1 | rno-miR-128b | 823 | 846 | cuuucucuggCCA-AGU-GACACU | ||| || |||||| | cctgctctttGGTACCAGCTGTGA |
Sh3kbp1 | rno-miR-136 | 452 | 475 | AGGUAGU-AGUUUUGUUUACCUCa | || ||| |:: :||:|||||| | TCACTCACTTGCTGCAGATGGAGc |
Sh3kbp1 | rno-miR-148b | 677 | 700 | uguuUC-AAGACACUACGU-GAcu | || ||:||||||||| || | ttggAGCTTTTGTGATGCAGCTac |
Sh3kbp1 | rno-miR-151 | 795 | 823 | GGAGU-UCC-UCGGAG-----UCAGAUCa | ||| | ||| | || | |||||:| | CCTAAGAGGAATCCGCTGAGAAGTCTGGc |
Sh3kbp1 | rno-miR-151* | 748 | 779 | aUGAUC-----UGACA-----CUCGAGGAGcu | ||||| ||||| ||||:||| | cACTAGAGGCCACTGTCTTCACAGCTTCTCtc |
Sh3kbp1 | rno-miR-18 | 398 | 419 | auAGAC-GUGAUCUACGUGGAau | |:|| ||| |||||| ||| | gtTTTGTCAC-AGATGCCCCTag |
Sh3kbp1 | rno-miR-191 | 822 | 857 | ucGACGA-AAACC----------CU---AAGGCAAc | ||||| ||||| || ||||||| | gcCTGCTCTTTGGTACCAGCTGTGACTTTTCCGTTt |
Sh3kbp1 | rno-miR-200a | 199 | 218 | uGUAGCAAUGGUCUGUCACAAu | | | | | || |:||||| | | tCCTGGGT-CC-GGCAGTGGTt |
Sh3kbp1 | rno-miR-205 | 258 | 280 | gUCU-GAGGCCACCUUACUUccu | ||| |||||| |||||| | gAGATCTCCGGCAAAATGAAaac |
Sh3kbp1 | rno-miR-207 | 790 | 818 | UUCC------CUCCUCUCGGU-CCUCUUCg | |||| ||||| | ||: |||||| | AAGGTCCTAAGAGGA-ATCCGCTGAGAAGt |
Sh3kbp1 | rno-miR-20b* | 441 | 469 | gUC-UUCAC-----GAGUG--UGACGUCa | || ||||| ||||| :|||||| | aAGCAAGTGCCTCACTCACTTGCTGCAGa |
Sh3kbp1 | rno-miR-214 | 819 | 844 | GA-CGGAC-AGA---CACGGACGACA | || ||||| ||| || || ||||| | CTGGCCTGCTCTTTGGTACCAGCTGT |
Sh3kbp1 | rno-miR-224 | 828 | 850 | auuugCCUUGGU-GAUCACUGAAc | || |||| || ||||||| | tctttGGTACCAGCT-GTGACTTt |
Sh3kbp1 | rno-miR-24 | 183 | 208 | GACAAGG----ACGACUUGACUCGGu | || | || ||:|| |||:|:| | CTTTCCCATGGTGTTGTCCTGGGTCc |
Sh3kbp1 | rno-miR-290 | 110 | 129 | uuuuuCACGGGGGUAUCAAACUc | |||:|||: |||||| | tcatcGTGTCCCT---GTTTGAa |
Sh3kbp1 | rno-miR-291-3p | 135 | 159 | cCGUGUGUUUC---ACCUUCGUGaaa | ||||| |||| | ||||| | aGCACA-AAAGTCTTCTTAGCACaac |
Sh3kbp1 | rno-miR-292-5p | 404 | 428 | guUUUCU-CGGGGGU--CAAACUCa | | ||| |||||:| ||||| | | tcACAGATGCCCCTAGTGTTTGTGc |
Sh3kbp1 | rno-miR-29a | 457 | 477 | uUGGCUAAAGUCUACCACGau | ||: : | ||||||| || | cACTTGCTGCAGATGGAGCaa |
Sh3kbp1 | rno-miR-29c | 179 | 198 | uggcuAAAGUUUACCACGAu | |||| ||||||:| | gactcTTTCCCATGGTGTTg |
Sh3kbp1 | rno-miR-30a-5p | 857 | 880 | gaAGGUC--AGCUCCUACAAAUGu | ||| | |:|||| |||| || | tcTCCTGCTTTGAGGTTGTTCACg |
Sh3kbp1 | rno-miR-320 | 664 | 687 | aaGCGGGAGAGUUGG-GUCGAAAA | | ||||:|::|:: ||||||| | acCACCCTTTTGATTGGAGCTTTT |
Sh3kbp1 | rno-miR-324-3p | 188 | 216 | GGU----CGUCGUGGACC----CCGUCACC | ||| |: |: ||||| |||||||| | CCATGGTGTTGT-CCTGGGTCCGGCAGTGG |
Sh3kbp1 | rno-miR-330 | 475 | 494 | agagACGUCCGGGACACGAAACg | ||| | ||| |||||| | caaaTGCTG--CCT-GGCTTTGt |
Sh3kbp1 | rno-miR-333 | 140 | 161 | UUUUC--AUUGAUCGUGUGGUG | ||||| | :||||||| ||| | AAAAGTCTTCTTAGCACAACAC |
Sh3kbp1 | rno-miR-339 | 194 | 217 | ACUCGAGGACCU--CCUGUC-CCu | || ||||||: |:||| || | TGTTGTCCTGGGTCCGGCAGTGGt |
Sh3kbp1 | rno-miR-345 | 193 | 212 | CGUGACCUGAUCCCCA-GUCGU | |:::|| || |||| |:||| | GTGTTGTCCT--GGGTCCGGCA |
Sh3kbp1 | rno-miR-346 | 269 | 291 | ucuccguccgUGAGUCCGUCugu | |||||||||| | caaaatgaaaACTCAGGCAGttt |
Sh3kbp1 | rno-miR-34c | 465 | 486 | CGU-UA-GUCGAUUGAUGUGACGGA | ||| || ||| || |::|||||| | GCAGATGGAGC-AA--ATGCTGCCT |
Sh3kbp1 | rno-miR-351 | 783 | 804 | gucCGAGUUUCCCGAGGAGUC-CCU | || |||||| |||| || ||| | ctaGC-CAAAGG--TCCTAAGAGGA |
Sh3kbp1 | rno-miR-370 | 766 | 794 | uugGUCCAAG---GUGGGGUCG---UCCg | ||| ||| |||||:||| ||| | tcaCAGCTTCTCTCACCCTAGCCAAAGGt |
Sh3kbp1 | rno-miR-382 | 753 | 775 | CUUAGGUGGU--GCUUGUUGAAG | ||: ||||:: : |||:|||| | GAGGCCACTGTCTTCACAGCTTC |
Sh3kbp1 | rno-miR-448 | 504 | 526 | uACCCU---GUAGGAUGUAUACGUU | | ||| :||| |||||||||| | tTAGGAGTCTATC--ACATATGCAA |
Sh3kbp1 | rno-miR-497 | 442 | 468 | auGUU--UGGUGUCA---CACGACGac | ||| :|| || | |||||| | agCAAGTGCCTCACTCACTTGCTGCag |
Sh3kbp1 | rno-miR-501 | 776 | 796 | AAAGUGGGUCCCUGUUUCCuaa | | |||||| | |||||| | TCTCACCC-TAGCCAAAGGtcc |
Sh3kbp1 | rno-miR-540 | 799 | 825 | ggUCC-UAG------CUGGAGACUGGA | ||| ||| || ||||:||| | agAGGAATCCGCTGAGAAGTCTGGCCT |
Sh3kbp1 | rno-miR-542-3p | 388 | 408 | AAGUCAAUAGUUAGACAGUGU | ||:| | :: |:||||||| | TTTAAATCGTGTTTTGTCACA |
Sh3kbp1 | rno-miR-7 | 128 | 151 | UUGU---UUUAGUGAUCAGAAGgu | |||| |: || ||||||| | AACATTCAGCACAAAAGTCTTCtt |
Sh3kbp1 | rno-miR-7b | 128 | 151 | UUGU---UUUAGUGUUCAGAAGgu | |||| |: || |||||||| | AACATTCAGCACAAAAGTCTTCtt |
Sh3kbp1 | rno-miR-96 | 63 | 85 | ucguUUUUACACGAUCACGGUUU | ||||| || |||||||| | aatcAAAATCATCTTGTGCCAAA |
Sh3kbp1 | rno-miR-96 | 209 | 234 | uCGUU-UUUACAC--GAUCACGGUUU | |||: :: |||| :||| |||||| | gGCAGTGGTTGTGATTTAGAGCCAAA |
Sh3kbp1 | rno-miR-103 | 478 | 485 | -------------AGUAU-CGGG----ACA-UG-UUACGACGA | ||| ||: || :| |||||||| | GCAAGUGCCUCACUCACUUGCUGCAGAUGGAGCAAAUGCUGCC |
Sh3kbp1 | rno-miR-107 | 478 | 485 | ACUAU-----------------CGGG-ACA-UG-UUACGACGA | || || :| |||||||| | GCAAGUGCCUCACUCACUUGCUGCAGAUGGAGCAAAUGCUGCC |
Sh3kbp1 | rno-miR-191 | 850 | 857 | ------UCG-ACGA-AAACCCU-------------AAGGCAAC | :|| |||| ||||| ||||||| | AAGUCUGGCCUGCUCUUUGGUACCAGCUGUGACUUUUCCGUUU |
Sh3kbp1 | rno-miR-224 | 843 | 850 | AUUU--------------------GCCUUGGU-GAUCACUGAAC | :|| |||| || ||||||| | CGCUGAGAAGUCUGGCCUGCUCUUUGGUACCAGCU-GUGACUUU |
Sh3kbp1 | rno-miR-324-3p | 209 | 216 | --------------GGUCGUCGU----GGACC----CCGUCACC | ||| ::|: ||||| |||||||| | GAGAAGACUCUUUCCCA-UGGUGUUGUCCUGGGUCCGGCAGUGGU |
Sh3kbp1 | rno-miR-448 | 519 | 526 | UAC--------------------CCUGUAGGA--UGUAUACGUU | ||| :||: |||||||||| | CCUGGCUUUGUAUUCCCCAUUUAGGA-GUCUAUCACAUAUGCAAU |
Sh3kbp1 | rno-miR-96 | 78 | 85 | UC---------------------GUUUUUACACGAUCACGGUUU | ||||| || |||||||| | AGACUCAGAUAUUCUGCCCCAAUCAAAAUCAU-CUUGUGCCAAAA |