DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004639 rno-miR-325-3p 29149 Strn aacuaUCCUCCACGA-GUUAUUu |||| | | | |||||| uuaggAGGAAGAGAUGCAAUAAu 2 18 548 570 [rn4:6:1428572-1428594:-] 0.5503 125 6 -14.82 -0.8600 MIMAT0000591 rno-miR-343 29149 Strn agacccgugUGCCUCCCUCu :| ||||||| uuuuguuugGCUGAGGGAGc 2 12 90 109 [rn4:6:1429033-1429052:-] 0.6541 143 7 -16.47 -0.4862 MIMAT0004655 rno-miR-345-3p 29149 Strn agaggucugggGAUCAAGUCCc :| ||||||| uaaaauuaaggUUUGUUCAGGu 2 12 158 179 [rn4:6:1428963-1428984:-] 0.6541 143 7 -12.91 -1.0507 MIMAT0005445 rno-miR-29b-1* 29149 Strn uuuagAUUUGG-UGGUAUACUuu || ::: |::|||||| aauaaUAUGUUAAUUAUAUGAua 3 18 565 587 [rn4:6:1428555-1428577:-] 0.5503 128 0 -7.35 -0.1928 MIMAT0003209 rno-miR-363* 29149 Strn uuuaacGUAGCACUAGGUGGGc :||| | ||||||| cuuaacUAUCCU--UCCACCCc 2 17 362 381 [rn4:6:1428761-1428780:-] 0.5460 145 7 -14.37 -0.3333 MIMAT0005286 rno-miR-878 29149 Strn agauggGUCAUACCACAGU-ACg ||||:| |||||| || aggagaCAGUGU-GUGUCAGUGu 2 17 452 473 [rn4:6:1428669-1428690:-] 0.5482 126 0 -18.59 -0.3206 MIMAT0005290 rno-miR-883 29149 Strn uaugacUCUCUACAACGUCAAu | || | |||||||| uaaaguACAG-UUUUGCAGUUc 2 17 124 144 [rn4:6:1428998-1429018:-] 0.6541 150 7 -10.13 -1.0640 MIMAT0005297 rno-miR-147 29149 Strn aucGUCUUC-GUAAAGGCGUGUg :| ||| || ||||||| ucuUACAAGUCA--ACCGCACAc 2 20 28 48 [rn4:6:1429094-1429114:-] 0.5513 143 7 -16.99 -0.4903 MIMAT0005336 rno-miR-760-5p 29149 Strn gcccGAGACCACCGGACUCCCc :|:|| | | ||||||| gcccUUUUGUUUGGCUGAGGGa 2 19 86 107 [rn4:6:1429035-1429056:-] 0.6541 158 7 -19.89 -0.3362 MIMAT0012826 rno-miR-220 29149 Strn uccaGAGACUGUGACAC-CACc ||||| :||||| ||| ucagCUCUGCGGCUGUGUGUGc 2 18 408 429 [rn4:6:1428713-1428734:-] 0.5460 129 0 -20.78 -0.2685 MIMAT0012832 rno-miR-568 29149 Strn cacacauauguaaAUAUGUa |||||| guuuugcaguuccUAUACAg 2 8 133 152 [rn4:6:1428990-1429009:-] 0.6541 120 6 -5.37 -0.1638 MIMAT0012843 rno-miR-876 29149 Strn accACUAAGUGUCUCUUUAGGu |||| |: |||||| | auaUGAU--AUUCAGAAAUGCu 2 20 580 599 [rn4:6:1428543-1428562:-] 0.5503 120 0 -7.66 -0.1162 MIMAT0012848 rno-miR-294 29149 Strn ucUAUCC-CGGAGGUAAA-ACUc | ||| |:|::|||| ||| aaAGAGGCACUUUUAUUUCUGAg 2 20 229 251 [rn4:6:1428891-1428913:-] 0.6541 122 0 -15.34 -0.6214 MIMAT0012850 rno-miR-465 29149 Strn guguggucGUGGCAAGAUUUau || : ||||||| uuccuauaCAGUUUUCUAAAau 3 15 142 163 [rn4:6:1428979-1429000:-] 0.6541 130 0 -9.00 -0.1289 MIMAT0012857 rno-miR-678 29149 Strn ggaGGUCAGGAA--CGGGGCUCUg |:| ||||| |||||||| uaaCUA-UCCUUCCACCCCGAGAc 2 20 364 386 [rn4:6:1428756-1428778:-] 0.5460 156 7 -28.85 -0.2344 MIMAT0012860 rno-miR-496 29149 Strn cucUAACCGGUACAUUAUGAGu | || : | ||||||: agaAAUGCUAAACAAAUACUUa 2 20 591 612 [rn4:6:1428530-1428551:-] 0.5503 127 0 -9.94 -0.1448 MIMAT0000602 rno-miR-20a 29149 Strn gauGGACGUGAUAUUCGUGAAAu || || | |:||||||| aucCCCCCA-AAGAGGCACUUUu 2 21 221 242 [rn4:6:1428900-1428921:-] 0.6541 150 7 -13.65 -0.8409 MIMAT0000786 rno-miR-17-5p 29149 Strn gauGGACGUGACAUUCGUGAAAc || || | |:||||||| aucCCCCCAAAG-AGGCACUUUu 2 21 221 242 [rn4:6:1428900-1428921:-] 0.6541 150 7 -12.75 -0.8409 MIMAT0000817 rno-miR-93 29149 Strn gaUGGACGUGCUUGU-CGUGAAAc |:| | | || | ||||||| agAUCCCCCCAAAGAGGCACUUUu 2 22 219 242 [rn4:6:1428900-1428923:-] 0.6541 152 7 -11.18 -0.8409 MIMAT0000825 rno-miR-106b 29149 Strn uagacgugacagUCGUGAAAu :||||||| uccccccaaagaGGCACUUUu 2 10 222 242 [rn4:6:1428900-1428920:-] 0.6541 141 7 -10.19 -0.8409 MIMAT0000834 rno-miR-128 29149 Strn uuucucuggccaaGUGACACu ||||||| gcucuacuaacccCACUGUGu 2 9 428 448 [rn4:6:1428694-1428714:-] 0.5460 140 7 -13.44 -0.2141 MIMAT0000846 rno-miR-141 29149 Strn gguagaaAUGGUCUGUCACAAu |:: | ||||||| gagacagUGUGUGUCAGUGUUc 2 16 454 475 [rn4:6:1428667-1428688:-] 0.5482 143 7 -13.84 -0.3958 MIMAT0000874 rno-miR-200a 29149 Strn uguagcaAUGGUCUGUCACAAu |:: | ||||||| gagacagUGUGUGUCAGUGUUc 2 16 454 475 [rn4:6:1428667-1428688:-] 0.5482 143 7 -13.84 -0.3958 MIMAT0000888 rno-miR-218 29149 Strn uguaccaaucUAGUUCGUGUu || ||||||| agccguucucAUGAAGCACAg 2 12 505 525 [rn4:6:1428617-1428637:-] 0.5503 147 7 -12.09 -0.1434 MIMAT0003211 rno-miR-20b-5p 29149 Strn uggacGUGAUACU-CGUGAAAc | | | || ||||||| aucccCCCAAAGAGGCACUUUu 2 17 221 242 [rn4:6:1428900-1428921:-] 0.6541 147 7 -10.11 -0.8409 MIMAT0005284 rno-miR-874 29149 Strn agccaGGGAGCCCG---GUCCCGUc |::|:| |: ||||||| ucuccCUUUUGAGUAAGCAGGGCAu 2 18 288 312 [rn4:6:1428830-1428854:-] 0.5460 144 7 -19.80 -0.2817 MIMAT0005311 rno-miR-410 29149 Strn uguccgguagacacAAUAUAa |||||| caauaauauguuaaUUAUAUg 2 8 564 584 [rn4:6:1428558-1428578:-] 0.5503 120 6 -5.00 -0.1256 MIMAT0005320 rno-miR-495 29149 Strn uucuucacguggUACAAACAAa | ||||||| uuucuaaaauuaAGGUUUGUUc 2 11 154 175 [rn4:6:1428967-1428988:-] 0.6541 142 7 -6.99 -0.6888 MIMAT0005340 rno-miR-92b 29149 Strn ccuccggcCCUGCUC-ACGUUAu ||| ||| |||||| uguuaggaGGAAGAGAUGCAAUa 2 15 546 568 [rn4:6:1428574-1428596:-] 0.5503 126 6 -20.64 -0.8308

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G028201 Strn Rattus norvegicus 29149

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Strn RAID00408736 rno-miR-3102 miRNA MIMAT0025051 Strn mRNA 29149 Prediction 0.1828 Strn RAID00526434 rno-miR-412-3p miRNA MIMAT0003124 Strn mRNA 29149 Prediction 0.1828 Strn RAID00824043 rno-miR-32-5p miRNA MIMAT0000811 Strn mRNA 29149 Prediction 0.1828 Strn RAID00846810 rno-miR-874-3p miRNA MIMAT0005284 Strn mRNA 29149 Prediction 0.2202 Strn RAID01018846 rno-miR-883-3p miRNA MIMAT0005290 Strn mRNA 29149 Prediction 0.1828 Strn RAID01179702 rno-miR-20b-5p miRNA MIMAT0003211 Strn mRNA 29149 Prediction 0.1828 Strn RAID01196184 rno-miR-92b-3p miRNA MIMAT0005340 Strn mRNA 29149 Prediction 0.2202 Strn RAID01472812 rno-miR-92a-3p miRNA MIMAT0000816 Strn mRNA 29149 Prediction 0.1828 Strn RAID01486545 rno-miR-128-3p miRNA MIMAT0000834 Strn mRNA 29149 Prediction 0.1828 Strn RAID01616801 rno-miR-345-3p miRNA MIMAT0004655 Strn mRNA 29149 Prediction 0.1828 Strn RAID02028958 rno-miR-93-5p miRNA MIMAT0000817 Strn mRNA 29149 Prediction 0.1828 Strn RAID02151850 rno-miR-106b-5p miRNA MIMAT0000825 Strn mRNA 29149 Prediction 0.1828 Strn RAID02255599 rno-miR-218a-5p miRNA MIMAT0000888 Strn mRNA 29149 Prediction 0.1828 Strn RAID02286012 rno-miR-760-5p miRNA MIMAT0005336 Strn mRNA 29149 Prediction 0.1828 Strn RAID02523078 rno-miR-17-5p miRNA MIMAT0000786 Strn mRNA 29149 Prediction 0.1828 Strn RAID02530220 rno-miR-363-5p miRNA MIMAT0003209 Strn mRNA 29149 Prediction 0.1828 Strn RAID03023536 rno-miR-200a-3p miRNA MIMAT0000874 Strn mRNA 29149 Prediction 0.2202 Strn RAID03086483 rno-miR-141-3p miRNA MIMAT0000846 Strn mRNA 29149 Prediction 0.2202 Strn RAID03117453 rno-miR-495 miRNA MIMAT0005320 Strn mRNA 29149 Prediction 0.2202 Strn RAID03184425 rno-miR-678 miRNA MIMAT0012857 Strn mRNA 29149 Prediction 0.1828 Strn RAID03375242 rno-miR-20a-5p miRNA MIMAT0000602 Strn mRNA 29149 Prediction 0.1828 Strn RAID03652252 rno-miR-137-3p miRNA MIMAT0000843 Strn mRNA 29149 Prediction 0.1828 Strn RAID03667244 rno-miR-410-3p miRNA MIMAT0005311 Strn mRNA 29149 Prediction 0.1828