DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Pwp1 rno-let-7b 136 160 UUGGUGUGUUGGA----UGAUGGAGU :| ||||:||| :||:|||: -GUC-CACAGCCUUUGGGCUGCCUUC Pwp1 rno-let-7c 137 160 UUGGUAUGUUGGA----UGAUGGAGU || |||:||| :||:|||: -UCC--ACAGCCUUUGGGCUGCCUUC Pwp1 rno-let-7i 132 160 -UGUCG--UGUUUGA----UGAUGGAGU :|||: |||: || :||:|||: GGCAGUCCACAGCCUUUGGGCUGCCUUC Pwp1 rno-miR-122a 88 117 -UGUUUGU-GGUA---ACAGU-GUGAGGU ||||| ||:| |||:: ||:||| AACAAAACUCCGUUCCUGUUGCCAUUCCU Pwp1 rno-miR-124a 130 160 -ACCGUAAG----UGG-----CGCACGGAAUU ||||| :|| || |||||| GUGGCAGUCCACAGCCUUUGGGC-UGCCUUC- Pwp1 rno-miR-134 112 137 -GGGAGACCAGUUGG--UCAGUGU- :||||| ||:|: :|| :|| UUCCUCUCUGCAGCUUUGGUGGCAG Pwp1 rno-miR-145 128 169 UUC-CCUA-AGG--------ACCCUU------UUGACCUG :| || ||| |||| |||||||: UGGUGGCAGUCCACAGCCUUUGGGCUGCCUUCAACUGGAUA Pwp1 rno-miR-18 5 32 AUAGACGU-GAUC-UACG--UGGAAU- ||| |: ||:| :||| |||||| GAUCAGUUCCUGGUGUGCUUACCUUAG Pwp1 rno-miR-184 77 104 -UGGGAAUAGUCAA--------GAGGCAGGU :|| ||| ||||||:| AGCCA----CAGAUGAACAAAACUCCGUUCC Pwp1 rno-miR-185 105 122 CUUGACGGAAA-GAGAGGU :|||| || |||||: --GUUGCCAUUCCUCUCUG Pwp1 rno-miR-193 118 139 -GACCCUGAAACAUCCGGUCAA ||| :||||| || |||| UCUGCAGCUUUGGUGG-CAGUC Pwp1 rno-miR-194 78 111 AGGUGUAC-CU----------CAACGACAAUGU ||||| || ||| |||||:| GCCACAGAUGAACAAAACUCCGUUCCUGUUGCC Pwp1 rno-miR-206 78 117 -GGUGUGUG-------------AAGGAAU---GUAAGGU ||||| |: ||||| |||||| GCCACAGAUGAACAAAACUCCGUUCCUGUUGCCAUUCCU Pwp1 rno-miR-20b* 59 80 GUCUUCACGAGUGU-----GACGUCA ||:||||| |||||| -----CUGUUCACAUGUAUCUGCAGC Pwp1 rno-miR-212 149 173 -CCGGCAC----UGACCUCUGACAAU |||:| |||||| ||||| GGGCUGCCUUCAACUGGAUACUGU-- Pwp1 rno-miR-291-5p 113 134 UCUCUCCCGGAGG-----UGAAACUAC- ||||: :|||||:|| -------UCCUCUCUGCAGCUUUGGUGG Pwp1 rno-miR-298 131 158 -CCUUCU--UGUCGGGAGGA-GACGG- || || ||||||:|: ||||| UGGCAGUCCACAGCCUUUGGGCUGCCU Pwp1 rno-miR-320 105 130 AAGCG----GGAGAGUUGGGUCGAAAA |:|| |||||| : ||||||| GUUGCCAUUCCUCUC--UGCAGCUUUG Pwp1 rno-miR-324-3p 117 139 -GGUCGUCGUGGACC-CCGUCACC :| ||||| ::||| |||||| CUCUGCAGC-UUUGGUGGCAGUC- Pwp1 rno-miR-324-5p 132 157 -UGU--GGUUACGGGAUCCCCUACGC :|| ||| |||:| ||| ||| GGCAGUCCACAGCCUUU-GGGCUGCC Pwp1 rno-miR-330 115 136 -AGAGACGUCCGGGACACGAAACG- ||||||||| |::|| |: || CUCUCUGCAG-CUUUG-GUG--GCA Pwp1 rno-miR-34a 139 173 UUGUUGG----UCGAU---------UCUGUGACGGU |||:|| :|||: :||:||||: CACAGCCUUUGGGCUGCCUUCAACUGGAUACUGU-- Pwp1 rno-miR-34b 140 159 GUUAGUCGAUUAAUGUGACGGAU |||| ||: :|||||| ---ACAGCCU-UUGGGCUGCCUU Pwp1 rno-miR-34c 132 159 -CGUUAG---UCGAUUGAUGUGACGGA- |||:|| ||| :|: :|||||| GGCAGUCCACAGCCU-UUGGGCUGCCUU Pwp1 rno-miR-370 107 136 UUGGUCCAAGGU--GGGGUCGU-----CCG- :||| |||| |: |||| ||| UGCCA--UUCCUCUCUGCAGCUUUGGUGGCA Pwp1 rno-miR-422b 113 142 CGGA-AGAC--UGAGGU-----UCAGGUCA ||| |||| :|| : |||||| UCCUCUCUGCAGCUUUGGUGGCAGUCCAC- Pwp1 rno-miR-449 121 147 UGGUCGA-----UUGUUAUGUGACGGU ||||| ::||:| ||| ||| -GCAGCUUUGGUGGCAGUCCACAGCCU Pwp1 rno-miR-485 145 160 CUUAAGUAGUGCCGGUCGGAGA |: |||: ||||: ------CUUUGGGCU-GCCUUC Pwp1 rno-miR-497 132 157 AUGUUUGGUGUC----ACACGACGAC :||: |||||| || ||||| GGCAGUCCACAGCCUUUGGGCUGCC- Pwp1 rno-miR-503 93 111 GUCAUGA--CAAGGGCGACGAU ||| |||||:|:||| ---AACUCCGUUCCUGUUGCC- Pwp1 rno-let-7b 135 159 UUGGUGUGUUGGA----UGAUGGAgu |::| ||||:||| :||:||| AGTC-CACAGCCTTTGGGCTGCCTtc Pwp1 rno-let-7c 136 159 uuGGUAUGUUGGA----UGAUGGAgu || |||:||| :||:||| gtCC--ACAGCCTTTGGGCTGCCTtc Pwp1 rno-let-7i 133 159 uGUC--GUGUUUGA----UGAUGGAgu ||| ||||: || :||:||| gCAGTCCACAGCCTTTGGGCTGCCTtc Pwp1 rno-miR-122a 75 99 uGUUUGUGGUAAC-AG-UGUGAGGu ||: ||| : || | | ||||| gCAGCCACAGATGAACAAAACTCCg Pwp1 rno-miR-124a 131 160 ACCGU-AAGUGGCG------C-ACGGAAuu ||||| | ||| || | |||||| TGGCAGTCCACAGCCTTTGGGCTGCCTTca Pwp1 rno-miR-134 123 142 ggGAGACCAGUUGGUCA-GUGU ||:|||| : |||| |||| agCTTTGGT--GGCAGTCCACA Pwp1 rno-miR-145 147 167 uuCCCUAAGGACCCUUUUGACCUg ||| | ||| ||||||| ttGGGCTGCCT---TCAACTGGAt Pwp1 rno-miR-184 82 103 ugggAAUAGUCAAGAGGCAGGu | | || ||||||:| cagaTGAACAAAACTCCGTTCc Pwp1 rno-miR-185 103 123 cuugACGG-AA--AGAGAGGU |||| || ||||| || ctgtTGCCATTCCTCTCTGCA Pwp1 rno-miR-193 119 138 GACCCUGAAACAUCCGGUCAa ||| :||||| || |||| CTGCAGCTTTGGTGG-CAGTc Pwp1 rno-miR-206 92 116 ggUGUGUGAAGG--AA-UGUAAGGu || | |||| || |||||| aaACTCCGTTCCTGTTGCCATTCCt Pwp1 rno-miR-20b* 54 79 gUCUUCACGAGUG-----UGACGUCa | || ||:|||| |||||| tAAAACTGTTCACATGTATCTGCAGc Pwp1 rno-miR-212 153 172 cCGGCA-CUGACCUCUGACAau ||| | |||||| ||||| tGCCTTCAACTGGATACTGT-- Pwp1 rno-miR-291-5p 106 132 ucucucccGGAG----GU-GAAACUAC |||| || |||||:|| ttgccattCCTCTCTGCAGCTTTGGTG Pwp1 rno-miR-298 129 151 CCUUCUUGUCGGG---AGGAGACgg || :| |||:|| |||:|| GGTGG--CAGTCCACAGCCTTTGgg Pwp1 rno-miR-320 105 129 aAGCG----GGAGAGUUGGGUCGAAAa |:|| |||||| : ||||||| gTTGCCATTCCTCTC--TGCAGCTTTg Pwp1 rno-miR-324-3p 118 139 gGUCGUCGUGGACC-CCGUCAcc | ||||| ::||| |||||| tCTGCAGC-TTTGGTGGCAGTcc Pwp1 rno-miR-324-5p 135 156 uguGGUUACGGGAUCCCCUACGc ||| |||:| ||| ||| agtCCACAGCCTT-TGGGCTGCc Pwp1 rno-miR-330 116 130 AGAGACGUCCGGGACACGAAACg |||||||| |||||| TCTCTGCA--------GCTTTGg Pwp1 rno-miR-34a 116 146 uuguugGUCGAUUCU--------GUGACGGu ||||| |: ||| ||| tctctgCAGCTTTGGTGGCAGTCCACAGCCt Pwp1 rno-miR-34b 134 158 GUUA---GUCGAUUAAUGUGACGGAu ||:| |||| ||: :|||||| CAGTCCACAGC-CTTTGGGCTGCCTt Pwp1 rno-miR-34c 121 146 CGUU-AGUCGAUUG--AUGUGACGGA |||: |: | |::| | ||| |||| GCAGCTTTGGTGGCAGTCCACAGCCT Pwp1 rno-miR-422b 113 142 cGGA-AGAC--UGAGGU-----UCAGGUca ||| |||| :||::: |||||| tCCTCTCTGCAGCTTTGGTGGCAGTCCAca Pwp1 rno-miR-449 120 146 ugGUCG-----AUUGUUAUGUGACGGu |||| |::||:| ||| ||| tgCAGCTTTGGTGGCAGTCCACAGCCt Pwp1 rno-miR-485 124 148 cuuAAGUAGUGCC--G-GUCGGAGA || :| :| | | ||||||:| gctTTGGTGGCAGTCCACAGCCTTT Pwp1 rno-miR-497 132 157 auGUUUGGUGUC----ACACGACGac ||: |||||| || ||||| ggCAGTCCACAGCCTTTGGGCTGCct Pwp1 rno-miR-503 90 111 GUCAUGA--CAAGGGCGACGau || ||| |||||:|:||| CAAAACTCCGTTCCTGTTGCca Pwp1 rno-miR-145 160 167 UU----------------------CCCUAAGGACCCUUUUGACCUG ||| ||| |||||||: CUUUGGUGGCAGUCCACAGCCUUUGGGCUGCCUUC---AACUGGAUA Pwp1 rno-miR-320 122 129 A------------------AGCGG----GAGAGUUGGGUCGAAAA |:||| ||||| : ||||||| GAACAAAACUCCGUUCCUGUUGCCAUUCCUCUC--UGCAGCUUUG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pwp1 RAID01340330 rno-miR-666-3p miRNA MIMAT0017371 Pwp1 mRNA 362856 Prediction 0.1828 Pwp1 RAID03073276 rno-miR-935 miRNA MIMAT0012845 Pwp1 mRNA 362856 Prediction 0.1828