DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004717 rno-miR-29b-2* 303476 Abi3 gauucggugguacacUUUGGUc |||||| agaacaaaacaaaacAAACCAa 2 8 190 211 [rn4:10:84543033-84543054:-] 0.5179 120 6 -6.75 -0.1462 MIMAT0004721 rno-miR-30b-3p 303476 Abi3 cuGCAUUUG-UAGGUGU-AGGGUc :||:||| :| : || ||||| gcUGUGAACUGUGUUCAGUCCCAc 2 21 97 120 [rn4:10:84543124-84543147:-] 0.5353 123 0 -17.82 -0.3680 MIMAT0003121 rno-miR-483 303476 Abi3 uguucUGCCCUCCCC--UC-CUCACu |:|||| ||| || ||||| gggguAUGGGAUGGGCUAGAGAGUGg 2 19 134 159 [rn4:10:84543085-84543110:-] 0.5179 129 0 -27.33 -0.4845 MIMAT0005328 rno-miR-673 303476 Abi3 gagguuccuGGCCUCGACACUc |: |:||||||| ugucuaccuCUUGGGCUGUGAa 2 14 83 104 [rn4:10:84543140-84543161:-] 0.5353 149 7 -18.17 -0.5045 MIMAT0012835 rno-miR-615 303476 Abi3 cuaGGCUCGUGGCCCCUGGGGg || || | | ||||||| gcaCCUUGCCCAGAGGACCCCc 2 20 226 247 [rn4:10:84542997-84543018:-] 0.5179 155 7 -29.00 -0.3867 MIMAT0012846 rno-miR-201 303476 Abi3 uuCUUGUUACGGAAUGACUCa ||::::|| ||||||| gaGAGUGGUG--GUACUGAGg 2 20 152 170 [rn4:10:84543074-84543092:-] 0.5179 148 7 -19.29 -0.1066 MIMAT0000560 rno-miR-326 303476 Abi3 ugaccuccuuccCGGGUCUCc |||||||| uuuaagcaccuuGCCCAGAGg 2 10 221 241 [rn4:10:84543003-84543023:-] 0.5179 145 7 -19.94 -0.1254 MIMAT0000562 rno-let-7d 303476 Abi3 uuGAUACGUUGGAU-GAUGGAGa ||| | :||||: ||||||| gaCUAAG-GACCUGUCUACCUCu 2 21 72 93 [rn4:10:84543151-84543172:-] 0.5353 161 7 -24.54 -0.3280 MIMAT0004641 rno-miR-330 303476 Abi3 cgGAUUCUGU-GUCCGGGUCUCu :|||| || | |||||||| guUUAAG-CACCUUGCCCAGAGg 2 21 220 241 [rn4:10:84543003-84543024:-] 0.5179 157 7 -26.94 -0.1254 MIMAT0000774 rno-let-7a 303476 Abi3 uuGAUAUGUUGGAU-GAUGGAGu ||| | :||||: ||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 72 93 [rn4:10:84543151-84543172:-] 0.5353 161 7 -22.84 -0.3280 MIMAT0000775 rno-let-7b 303476 Abi3 uuGGUGUGUUGGAU-GAUGGAGu |:| | :||||: ||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 72 93 [rn4:10:84543151-84543172:-] 0.5353 157 7 -22.16 -0.3280 MIMAT0000776 rno-let-7c 303476 Abi3 uuGGUAUGUUGGAU-GAUGGAGu |:| | :||||: ||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 72 93 [rn4:10:84543151-84543172:-] 0.5353 157 7 -22.15 -0.3280 MIMAT0000777 rno-let-7e 303476 Abi3 uuGAUAUGUUGGA-GGAUGGAGu ||| | :|||| :||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 72 93 [rn4:10:84543151-84543172:-] 0.5353 161 7 -22.76 -0.3280 MIMAT0000778 rno-let-7f 303476 Abi3 uuGAUAUGUUAGAU-GAUGGAGu ||| | :| ||: ||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 72 93 [rn4:10:84543151-84543172:-] 0.5353 153 7 -15.97 -0.3307 MIMAT0000779 rno-let-7i 303476 Abi3 uugucgUGUUUGAU-GAUGGAGu | :| ||: ||||||| ggacuaAGGACCUGUCUACCUCu 2 17 71 93 [rn4:10:84543151-84543173:-] 0.5353 147 7 -15.24 -0.3307 MIMAT0000787 rno-miR-18a 303476 Abi3 gauagacgUGAUCUACGUGGAAu | | | ||||||| agaaguuaAGUUUAAGCACCUUg 2 16 211 233 [rn4:10:84543011-84543033:-] 0.5179 143 7 -12.79 -0.5142 MIMAT0000819 rno-miR-98 303476 Abi3 uuGUUAUGUUGAAUGAUGGAGu | | : | || ||||||| gaCUAAGGACCUGUCUACCUCu 2 21 72 93 [rn4:10:84543151-84543172:-] 0.5353 148 7 -12.57 -0.3280 MIMAT0003192 rno-miR-379 303476 Abi3 ggAUGCAAGGUAUCAGAUGGu || | || | ||||||| acUAAGGACC-U-GUCUACCu 2 20 73 91 [rn4:10:84543153-84543171:-] 0.5353 143 7 -17.08 -0.4789

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G116409 Abi3 Rattus norvegicus 303476

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Abi3 RAID00441153 rno-let-7e-5p miRNA MIMAT0000777 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID00575768 rno-let-7a-5p miRNA MIMAT0000774 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID00732643 rno-let-7f-5p miRNA MIMAT0000778 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID00916137 rno-let-7b-5p miRNA MIMAT0000775 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID01045672 rno-miR-326-3p miRNA MIMAT0000560 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID01227692 rno-let-7d-5p miRNA MIMAT0000562 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID01259998 rno-let-7c-5p miRNA MIMAT0000776 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID01289134 rno-miR-330-5p miRNA MIMAT0004641 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID01299782 rno-miR-18a-5p miRNA MIMAT0000787 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID01949820 rno-miR-3549 miRNA MIMAT0017807 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID01957237 rno-miR-702-3p miRNA MIMAT0017885 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID02556592 rno-miR-702-5p miRNA MIMAT0017884 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID02822474 rno-let-7i-5p miRNA MIMAT0000779 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID02990056 rno-miR-615 miRNA MIMAT0012835 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID03875951 rno-miR-379-5p miRNA MIMAT0003192 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID03939954 rno-miR-673-5p miRNA MIMAT0005328 Abi3 mRNA 303476 Prediction 0.1828 Abi3 RAID03982512 rno-miR-98-5p miRNA MIMAT0000819 Abi3 mRNA 303476 Prediction 0.1828