DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Usp24 rno-let-7b 853 881 -UUGGUGUG----UUGGAUGAUGGAGU- :|||:| : :|:|| ||||: CGACCGCCUAUUAGUGUUGCUCCCUCGA Usp24 rno-let-7f 147 174 -UUG-AUAUGUUAGA--UGAUGGAGU- :|| |:||||:| |||||:||| AGACGUGUACAGUAGUGACUACUUCAG Usp24 rno-let-7i 148 174 -UGU-CGUGUUUGA--UGAUGGAGU- ||: |:|||: |||||:||| GACGUGUACAGUAGUGACUACUUCAG Usp24 rno-miR-101a 533 554 GAAGUCAAUAGUG-UCAUGACAU ||||||||: ||| ||| -AUCAGUUAUUGGAAGUCCUGC- Usp24 rno-miR-103 1005 1026 AGUAUCGGGACAUGUUACGACGA- ||:|: ||||| |||||:| -GAUGGUGGUGUAC--UGCUGUUU Usp24 rno-miR-107 1004 1026 ACUAUCGGGACAUGUUACGACGA- |||:|: ||||| |||||:| AGAUGGUGGUGUAC--UGCUGUUU Usp24 rno-miR-124a 1454 1483 ACCGUA-------AGUGGCGCACGGAAUU- ||| ||:|:| ||||||| -AGCAGAAUCUCGUCGCUGAAGGCCUUAAA Usp24 rno-miR-126 92 119 CGUAAUAAUGAGU-----------GCCAUGCU- |:|||: :|||:||| ------CUGCUCGGAUAUACCAGAUGGUGCGAG Usp24 rno-miR-128a 446 471 UUUUCUCU---GGC-CAAGUGACACU- :||||| :|| ||| :|||||: -UGAGAGAAGUUCGAGUU-GCUGUGGC Usp24 rno-miR-130a 1594 1621 UACGGGAAAAUUGUA-------ACGUGAC- ||:|| |:|:| ||||||| CUGUCCC---AGCGUCUACUGGUGCACUGA Usp24 rno-miR-130b 1594 1621 UACGGGAAAGUAGUA----ACGUGAC- ||:|| |:|| ||||||| CUGUCCCAGCGUCUACUGGUGCACUGA Usp24 rno-miR-134 659 681 -GGGAGAC-CAGUUGGUCAGUGU :|:|||| |||| :||| ||| UUCUUCUGCGUCACUCAG-CACU Usp24 rno-miR-135a 895 917 -AGUGUA-UCCUUAUUUUUCGGUAU || ||| ||||| |:||||| CUC-CAUGAGGAAGUAGAAGCCU-- Usp24 rno-miR-135b 1485 1504 GUGUAUCCUUACUUUUCGGUAU :| |||:|| ::||||| AGCCU-GGAGUG-GGAGCCAG- Usp24 rno-miR-136 709 746 -AGGUAGUAGUUUUGU------------UUACCUCA- || :||| ||:|||| :||||||| GUCAGUCAACAGAACAGUCAGAUCCGCCGAUGGAGUU Usp24 rno-miR-139 144 163 -UCUGUGCACGUGACAUCU ||| |||||:|| |||| CAGAGACGUGUACAGUAGU Usp24 rno-miR-141 472 501 -GGU-AGAAA-----UGG--UCUGUCACAAU ||| ||| ||| |||||||| ACCAUUCUGGAGAAGACCUUAGACAGUGC-- Usp24 rno-miR-145 1559 1586 UUCCCU-AAGGACCCUUUU--GACCUG- |||| || :|||||:|| |||||: -UGGGAGUUGUUGGGAGAAUUCUGGAUG Usp24 rno-miR-148b 999 1021 -UGUUUCAAGACACUACGUGACU |:::|| |||:||:|||| CAUGGAGAUG-GUGGUGUACUGC Usp24 rno-miR-150 1547 1577 -GUG-ACCA-UGUUCC----CAACCCUCU- ||| ||| :| :|| ||||||||| CCACUUGGAGGCUGGGAGUUGUUGGGAGAA Usp24 rno-miR-151* 860 882 -AUGAUCUGACACUCGA-GGAGCU- ||:||| | ||| |||||| CUAUUAGUGUU---GCUCCCUCGAG Usp24 rno-miR-152 1597 1621 -GGGUUCAAGAC-AGUACGUGACU ||||: ||| | :|||||||| UCCCAGCGUCUACUGGUGCACUGA Usp24 rno-miR-15b 1000 1024 -ACAUUUGGUACUACACGACGAU- || :|: :||:||| |||||: AUGGAGAUGGUGGUGUACUGCUGU Usp24 rno-miR-16 856 875 -GCGGUUAUAAAUGCACGACGAU |||| |||| |||:|||| CCGCC--UAUUA--GUGUUGCUC Usp24 rno-miR-17 1018 1043 -UGAU--GGACGUGACAUUCGUGAAAC :||: :||||| |:|||||||| UGCUGUUUCUGCAA--UGAGCACUUUU Usp24 rno-miR-18 1024 1043 AUAGACGUGAUCUACGUGGAAU |||||| || ||||:|| -UUCUGCAAU-GA-GCACUUUU Usp24 rno-miR-181a* 721 743 CCAUGUUAGUUGC--CAGCUACCA |||:|||: | |||||| --AACAGUCAGAUCCGCCGAUGGA Usp24 rno-miR-185 591 618 CUUGACG---------GAAAGAGAGGU |||||: :||||||||: AAACUGUGCUCAGUACUUUUCUCUCUU Usp24 rno-miR-187 738 761 -GCCGAC-GUUGUGUUCUGUGCU- :|| ||:|||||| ||||: AUGGAGUUCAGCACAAG-CACGGG Usp24 rno-miR-192 1052 1074 CCGACAGUUAAGUA--UCCAGUC |:|| || ||||| |||||| UGUUG-CAUUUCAUUAAGGUCAU Usp24 rno-miR-193 1568 1595 GACCCU-----GAA--ACAUCCGGUCAA ||||| || |||:|||||| UUGGGAGAAUUCUGGAUGUGGGCCAGC- Usp24 rno-miR-194 1178 1201 AGGUGUACCUCAA--CGACAAUGU- |||| |||||| |||| |||| ACCAC-UGGAGUUGGGCUG-UACAA Usp24 rno-miR-207 1489 1511 UUCCCUC-CUCUCGGUCCUCUUCG- |||| |:|||||||||| |: --UGGAGUGGGAGCCAGGAGU-GUG Usp24 rno-miR-20a 1024 1043 GAUGGACGUGAUAUUCGUGAAAU :||||| ||:|||||||| --UUCUGCA--AUGAGCACUUUU Usp24 rno-miR-20a* 417 446 ACAU--UCAC--GAGCA---UUACGUCA- ||| :|| ||:|| |:|||||| GGUAAAGGUUUUCUUGUUGGAGUGCAGUG Usp24 rno-miR-20b 1024 1043 UGGACGUGAUACUCGUGAAAC :||||| ||||||||||| UUCUGCA--AUGAGCACUUUU Usp24 rno-miR-212 1544 1565 -CCGGCACUGACCUCUGACAAU- |||| :|||||:||| | UGGCCAC--UUGGAGGCUGGGAG Usp24 rno-miR-214 365 387 GACGGACAGACA-CGGACGACA |||:|||| || ||:||:|| AUGCUUGUCAGUGGCUUGUUGA Usp24 rno-miR-215 1053 1075 CAGACAGUUUAGUA--UCCAGUA- :|| || |||| ||||||| -GUUG-CAUUUCAUUAAGGUCAUG Usp24 rno-miR-217 722 746 UAGGUCAGUCAAGGA--CUACGUCAU ||||||| ||| |||| ||| --ACAGUCAGAUCCGCCGAUGGAGUU Usp24 rno-miR-23b 416 450 -CCAUU-----AGGGAC-------CGUUACACUA ||||| |:|:|| |||:||||| UGGUAAAGGUUUUCUUGUUGGAGUGCAGUGUGAG Usp24 rno-miR-24 1019 1038 -GACAAGGACGACUUGACUCGGU |||||:|||| ||||| GCUGUUUCUGCAA---UGAGCA- Usp24 rno-miR-25 440 461 AGUCUGGCUCUGUUCACGUUAC ||| :|||| |||| |:| GCAGUGUGAGAGAAGUUCGAG- Usp24 rno-miR-292-3p 993 1020 -UGUGAGU-UUUGGACCGCCG--UGAA :|||||| ::| |||:||: ||| GGCACUCAUGGAGAUGGUGGUGUACUG Usp24 rno-miR-292-5p 1478 1501 -GUUUUCUCGGGGGUCAAACUCA :|||||||||: ||| ||| UUAAAAGAGCCUGGAGUGGGAGC Usp24 rno-miR-296 1559 1593 UGUCCU-AACUCCCC--------------CCCGGGA :||| ||| ||| ||||| -UGGGAGUUGUUGGGAGAAUUCUGGAUGUGGGCCA- Usp24 rno-miR-29a 96 117 UUGGCUAAA--GUCUACCACGAU | ||| |||||||||| -UCGGAUAUACCAGAUGGUGCG- Usp24 rno-miR-29c 96 117 UGGCUAAA--GUUUACCACGAU | ||| ||:||||||| UCGGAUAUACCAGAUGGUGCG- Usp24 rno-miR-301 775 797 UACGAAACUGUUAUGAUAACG---UGAC- ||||||||:|||| :||| -------CACAAUACUGUUGCCUUGCUGG Usp24 rno-miR-324-5p 1406 1438 -UGUGGU-------UACGGGA-UCCCCUACGC ||| || :||||| || |||||| UACAGCAGAGCAGUGUGCCCAGAGAGGAUGCU Usp24 rno-miR-326 1487 1508 UGACCUCCUUCC-CGGGUCUCC |||||| :|| ||| :||| CCUGGAGU-GGGAGCCAGGAGU Usp24 rno-miR-327 880 906 -UGGGAGUAC--GGGGAG---UUCC- :||||| |||||| :||| AGCCCUCUGCUACCCCUCCAUGAGGA Usp24 rno-miR-328 1551 1595 UGCCUU---CCCG-------UCUCU-----------CCCGGUC :|||: ||| :|||| ||||||| UUGGAGGCUGGGAGUUGUUGGGAGAAUUCUGGAUGUGGGCCAGC Usp24 rno-miR-329 419 448 UUUUUCCAAU----CGACC-CA---CACAA ||||||| |:||| || |||| -UAAAGGUUUUCUUGUUGGAGUGCAGUGUG Usp24 rno-miR-331 1487 1509 AAGAUCCUAUCCG-GGUCCCCG- ||:| :|:|| ||||| |: -CCUGGAGUGGGAGCCAGGAGUG Usp24 rno-miR-337 637 656 UUUCCGUAGUAUAUCCUCGACUU- ||||:|| |||| ||||:| CAAGGUAU----UAGG-GCUGGAG Usp24 rno-miR-339 1544 1565 ACUCGA-GGACCUCCUGUCCCU- :|| |:|||||| | |||| -UGGCCACUUGGAGG-CUGGGAG Usp24 rno-miR-341 728 748 UGACUGGCUGGCUGGCU--AGCU ||:| :||||: || || --AGAUCCGCCGAUGGAGUUCA- Usp24 rno-miR-342 1502 1537 CUGCC-CACGCUAAA----GACACA-------CUCU- || |||:||| ||||| |||| --AGGAGUGUGAUGAGGACCUGUGCUCCAGAGGAGAG Usp24 rno-miR-343 1541 1565 -AGACCCGUGUGCCUCC--CUCU- ||||| ||| ||||| |:|| CUCUGGCCACUUGGAGGCUGGGAG Usp24 rno-miR-345 675 716 -CGUGAC-CUG---AU---------------CCCCAGUCGU |||||| ||| |: ||||||||: AGCACUGAGACACAUGAUCAGCUUCCUCCUUGGGGUCAGUC Usp24 rno-miR-346 1552 1577 -UCUCCG--UC-CGUGAGUCCGUCUGU :||||| :| |: |::|| ||| UGGAGGCUGGGAGUUGUUGGG-AGAA- Usp24 rno-miR-347 1417 1436 ACCCGC-UGGGUCUC-CCUGU |:| :||||||| |||: --AGUGUGCCCAGAGAGGAUG Usp24 rno-miR-34c 1343 1369 -CGUUAGUCGAUUGAUGUGA--CGGA |||||||| |:| :|| |:| AGCAAUCAGGAAGCAGCAACGGGUCA Usp24 rno-miR-351 1500 1537 -GUCCGAGU----UUCC------CGAGGAGUCC-CU- |||| :||| ||||| ||| || CCAGGAGUGUGAUGAGGACCUGUGCUCCAGAGGAGAG Usp24 rno-miR-352 1129 1154 -AUGAUACGUU----GGAUGAUGAGA ||||| |||| |||:||:|| UUACUAGGCAAGUGUCCUGCUGCUA- Usp24 rno-miR-363-5p 457 476 -UUUAACGUAGCACUAGGUGGGC :|:|||| :|||: ||||| CGAGUUGC--UGUGG-CCACCA- Usp24 rno-miR-369-5p 296 320 GCUUAUAUU-GUGCCAGCUA-GA- ||| || ||||||| || AGAAGAAACUCAGGGUCGAUACUG Usp24 rno-miR-376a 650 670 GCACCUAA--AAGGAGAUGCUA |||| |||:|||:|| -CUGGAGAUCUUCUUCUGCGU- Usp24 rno-miR-376b* 752 779 -UUGGUAUCU----UCCUUAUAGGUG- |:| :|| :||||| ||||| AAGCACGGGAAUUUGGGAAUCUCCACA Usp24 rno-miR-378 1467 1508 -UGUGU-CC----------UGGACCUCA------GUCCUC :| | || :|||||||| |||||| CGCUGAAGGCCUUAAAAGAGCCUGGAGUGGGAGCCAGGAGU Usp24 rno-miR-379 1594 1612 AUGCAAGGUAUCAGAUGGU :|| ||| ||||||: -CUGUCCCAGCGUCUACUG Usp24 rno-miR-383 773 801 UCGGUGU-----CAGUGGAA-GACUAGA- ||||| ||::|||| |||:||| -UCCACAAUACUGUUGCCUUGCUGGUCUU Usp24 rno-miR-421 1497 1521 GUUGUUUGUAA-AUUACUCC-GG- |:| |: | |:|||||| || GAGCCAGGAGUGUGAUGAGGACCU Usp24 rno-miR-424 772 797 -AGGUUUUGUACUUAACG--ACGAC- |||| ||:| :|||| ||||| CUCCACAAUACU-GUUGCCUUGCUGG Usp24 rno-miR-449 1588 1621 -UGGUCGAU-----UGU-------UAUGUGACGGU :||||||: :|: :|:||||| GGCCAGCUGUCCCAGCGUCUACUGGUGCACUGA-- Usp24 rno-miR-483 1483 1510 UGUUCUGCCCUC-CCCU----CCUCACU :|| | |||| |||| |||||| -AGAGCCUGGAGUGGGAGCCAGGAGUGU Usp24 rno-miR-499 1463 1483 UUUGUAGUGACGUUCAGAAUU- |:||:||| |:| ||||| --UCGUCGCUGAAGGCCUUAAA Usp24 rno-miR-501 224 246 AAAGUGGGUCC---CUGUUUCCUAA |:|||| |:|||||| -AUUACCCUUGCAUGGCAAAGGU-- Usp24 rno-miR-503 1138 1155 GUCAUGACAAGGGCGACGAU- |||: |||:||||||| AAGUG----UCCUGCUGCUAA Usp24 rno-miR-505 1494 1520 -CCUUUGGUCGUUCACAA-----CUG- ||:|:|||| :||||| ||| UGGGAGCCAG-GAGUGUGAUGAGGACC Usp24 rno-miR-540 1529 1550 GGUCCUAGCUGG--AGACUGGA |||| |||: ||||:|| -GAGGAGAGACUUCUCUGGCCA Usp24 rno-miR-7 789 805 UUGUUUUAGUGAUCAGAAGGU- |::||:||||| || ------CUUGCUGGUCUUGCAU Usp24 rno-miR-7* 1543 1572 AUACCG-------UCUGACACUAAACAAC- |||| ||:||| || |||||| -CUGGCCACUUGGAGGCUGGGAGUUGUUGG Usp24 rno-miR-9 1405 1432 AGUAUGUCGAUCUAUU------GGUUUCU- |||||| ||| |||:||| --UUACAGC-AGAGCAGUGUGCCCAGAGAG Usp24 rno-miR-98 147 174 -UUGU-UAUGUUGAA--UGAUGGAGU- :||: :||||: |||||:||| AGACGUGUACAGUAGUGACUACUUCAG Usp24 rno-let-7b 848 879 UUGGUG-UGUUGGAU---------GAUGGAGu ||| || || :|||| || |||| AACAACGACCGCCTATTAGTGTTGCTCCCTCg Usp24 rno-let-7f 148 172 uUG-AUAUGUUA--GAUGAUGGAGU || |:||||:| : |||||:||| gACGTGTACAGTAGTGACTACTTCA Usp24 rno-let-7i 149 172 UGU-CGUGU--UUGAUGAUGGAGU ||: |:||| |:: |||||:||| ACGTGTACAGTAGTGACTACTTCA Usp24 rno-miR-101a 532 554 GAAGUCAAUAG-UGUCAUGACau | ||||||||: : ||| ||| CATCAGTTATTGGAAGTCCTGct Usp24 rno-miR-103 1004 1024 agUAUCGGGACAUGUUACGACGA ||:|: ||||| |||||:| agATGGTGGTGTAC--TGCTGTT Usp24 rno-miR-106b 1024 1042 uAGACGUGACAGUCGUGAAAu |||||| || |||||||| tTCTGCAATG--AGCACTTTt Usp24 rno-miR-106b 662 683 uAGACGU-GACAGUCGUGAaau |||||: | |||||||| tTCTGCGTCACTCAGCACTgag Usp24 rno-miR-124a 1456 1481 acCGUA-AGUGGCG-C--ACGGAAUU | || ||::||| | ||||||| caGAATCTCGTCGCTGAAGGCCTTAA Usp24 rno-miR-125a 293 311 GUGUCCAAUUUCCCAGAGUCCCu || || ||| ||||||| CAAAG----AAGAAACTCAGGGt Usp24 rno-miR-125b 290 311 agUGUUCAAUCCCAGAGUCCCu |||| || ||||||| gaACAAAGAAGAAACTCAGGGt Usp24 rno-miR-126 97 117 cguaAUAAUGAGUGCCAUGCU ||| | |:|||:||| cggaTATACCAGATGGTGCGA Usp24 rno-miR-128a 447 469 uUUUC-UCUGGCCAAGUGACACu |:|| || :|| |::||||| gAGAGAAGTTCGAGTTGCTGTGg Usp24 rno-miR-130a 1598 1619 uacgggaaaauuguaACGUGAC ||||||| cccagcgtctactggTGCACTG Usp24 rno-miR-134 660 680 gGGAGAC-CAGUUGGUCAGUGu |:|||| |||| :||| ||| tCTTCTGCGTCACTCAG-CACt Usp24 rno-miR-135a 896 918 AGUGUA-UCCUUAUUUUUCGGUAU || ||| ||||| |:||||| || TC-CATGAGGAAGTAGAAGCCTTA Usp24 rno-miR-135b 1484 1504 guguauCCUUACUUUUCGGUau |||:|| ::||||| gagcctGGAGTG-GGAGCCAgg Usp24 rno-miR-136 710 744 AGGUAGUAGUUUUGU------------UUACCUCA || :||| ||:|||| :||||||| TCAGTCAACAGAACAGTCAGATCCGCCGATGGAGT Usp24 rno-miR-139 145 162 UCUGUGCACGUGACAUCu ||| |||||:|| |||| AGAGACGTGTACAGTAGt Usp24 rno-miR-141 479 502 gguagaaaUGG--UCUGUCACaau ||| |||||||| tggagaagACCTTAGACAGTGcct Usp24 rno-miR-145 1558 1584 uuCCCU-AAGGACCCUUUU--GACCUg |||| || :|||||:|| ||||| ctGGGAGTTGTTGGGAGAATTCTGGAt Usp24 rno-miR-148b 1000 1020 UGUUUCAAGACACUACGUGACu |:::|| | |||:||:|||| ATGGAGAT-GGTGGTGTACTGc Usp24 rno-miR-150 1548 1575 GUGACCAU--GUUCC----CAACCCUCU |||| | | | :|| ||||||||| CACTTGGAGGCTGGGAGTTGTTGGGAGA Usp24 rno-miR-151* 804 820 AUGAUCUGACACUCGAGGAGCu ||| |||| || ||||||| TAC-AGAC-GT---CTCCTCGc Usp24 rno-miR-151* 861 880 AUGAUCUGACACUCGA-GGAGCU ||:||| ||| ||| |||||| TATTAG--TGT-TGCTCCCTCGA Usp24 rno-miR-152 1598 1620 GGGUUCAAGA-CAGUACGUGACU ||||: ||| | :|||||||| CCCAGCGTCTACTGGTGCACTGA Usp24 rno-miR-15b 1131 1153 acAUUUGGU-ACUACACGACGAU ||::| | || |||||||| acTAGGCAAGTGTCCTGCTGCTA Usp24 rno-miR-15b 1001 1022 ACAUUUGGUACUACACGACGAu || |:|: :||:||| ||||| TGGAGATGGTGGTGTACTGCTg Usp24 rno-miR-16 1135 1153 gCGGUUAUAAAUGCACGACGAU || |:|:| | |||||||| gGCAAGTGT---CCTGCTGCTA Usp24 rno-miR-16 857 874 GCGGUUAUAAAUGCACGACGAu |||| || ||| |||:|||| CGCC--TA-TTA-GTGTTGCTc Usp24 rno-miR-17 1016 1042 UGAUG-----GACGUGACAUUCGUGAAAc |||:| ||||| || |||||||| ACTGCTGTTTCTGCAATG--AGCACTTTt Usp24 rno-miR-18 1023 1042 AUAGACGUGAUCUACGUGGAAu | |||||| | || ||||:|| TTTCTGCAAT-GA-GCACTTTt Usp24 rno-miR-181a* 719 742 cCAUGUUAGUU--GCCAGCUACCa | |||:|||: | | |||||| aGAACAGTCAGATCCGCCGATGGa Usp24 rno-miR-185 600 617 cuUGACGGAAAGAGAGgu | | |:|||||||| tcAGTACTTTTCTCTCtt Usp24 rno-miR-187 739 759 gCC-GACGUUGUGUUCUGUGCu || | ||:|||||| |||| tGGAGTTCAGCACAAG-CACGg Usp24 rno-miR-193 1568 1595 gACCCU-----GA--AACAUCCGGUCaa ||||| || |||:|||||| tTGGGAGAATTCTGGATGTGGGCCAGct Usp24 rno-miR-195 1135 1153 CGGUUAUAAAGACACGACGAU | ||| :| || |||||||| GGCAA-GTGTC-CTGCTGCTA Usp24 rno-miR-207 462 487 uuccCUCCUCUCG---GUCCUCUUCg | || | | | ||||||| tgctGTGGCCACCATTCTGGAGAAGa Usp24 rno-miR-207 1487 1510 uucCCUC-CUCUCGGUCCUCuucg |||| |:|||||||||| cctGGAGTGGGAGCCAGGAGtgtg Usp24 rno-miR-207 1509 1538 uuccCUCCU---CUC--GG--UCCUCUucg ||||| | | || |||||| tgatGAGGACCTGTGCTCCAGAGGAGAgac Usp24 rno-miR-20a 1022 1042 gAUGGACGUGAUAUUCGUGAAAu | :||||| ||:|||||||| gTTTCTGCA--ATGAGCACTTTt Usp24 rno-miR-20b 1024 1042 ugGACGUGAUACUCGUGAAAc ||||| ||||||||||| ttCTGCA--ATGAGCACTTTt Usp24 rno-miR-212 1545 1563 CCGGCACUG-ACCUCUGACaau |||| || |||||:||| GGCC---ACTTGGAGGCTGgga Usp24 rno-miR-214 1129 1151 gACGGACAG-ACAC-GGACGACa | |: | | ||| ||||||| tTACTAGGCAAGTGTCCTGCTGc Usp24 rno-miR-216 1372 1393 guGUCA--ACGGUCGACUCUAAu |||| ||||| ||||| | agCAGTCCTGCCA-ATGAGAATg Usp24 rno-miR-217 720 745 uagGUCAGUCAAG--GACUACGUCAu ||||||| || | |||| ||| gaaCAGTCAGATCCGCCGATGGAGTt Usp24 rno-miR-23b 417 449 CCAUU-----AGGGAC-------CGUUACACUa ||||| |:|:|| |||:||||| GGTAAAGGTTTTCTTGTTGGAGTGCAGTGTGAg Usp24 rno-miR-24 1020 1038 GACAAGGACGACUUGACUCGgu |||||:|||| | ||||| CTGTTTCTGC---AATGAGCac Usp24 rno-miR-25 424 445 agucuggcucuguUCACGUUAC ||||||:|| gttttcttgttggAGTGCAGTG Usp24 rno-miR-292-3p 977 999 ugUGAGUUUUGGACCGCCGUGAa ||| : ||| :|||||| tgACTGGTTCCCTCCTGGCACTc Usp24 rno-miR-292-5p 1479 1500 gUUUUCUCGGGGGUCAAACUCa |||||||||: ||| ||| tAAAAGAGCCTGGAGTGGGAGc Usp24 rno-miR-296 1571 1593 ugUCCUAACUCC--CCCCCGGga || ||| || | ||||| ggAGAATTCTGGATGTGGGCCag Usp24 rno-miR-298 864 890 ccuucuugucGGGA-----GGAGACGg |||| ||||||| tagtgttgctCCCTCGAGCCCTCTGCt Usp24 rno-miR-29a 95 117 uuGGCUAAA--GUCUACCACGau | ||| | |||||||||| ctCGGATATACCAGATGGTGCga Usp24 rno-miR-29c 96 117 uGGCUAAA--GUUUACCACGau | ||| | ||:||||||| tCGGATATACCAGATGGTGCga Usp24 rno-miR-300 207 237 cUUC--UCUCG-------AACGGGAACGUAu ||| | ||| || ||||||||| tAAGTTAAAGCACCCACATTACCCTTGCATg Usp24 rno-miR-300 781 805 cuucucucGAACG---GGAACGUAU ||||| :|||||||| actgttgcCTTGCTGGTCTTGCATA Usp24 rno-miR-300 241 263 cUUCUCUCGAACG-GGAACGuau |:| |||||||| ||||| aAGGTGAGCTTGCAGCTTGCcgt Usp24 rno-miR-301 768 792 uacgaaacUGUUAUGAUAACGUGAC ||||||||:|||| :|| gaatctccACAATACTGTTGCCTTG Usp24 rno-miR-324-5p 1412 1437 UGUGGU--UACGGG-AUCCCCUACGc | | || :||||| || |||||| AGAGCAGTGTGCCCAGAGAGGATGCt Usp24 rno-miR-326 1407 1430 UGAC--CUCCUU-CCCGGGUCUCc || | ||| |: | |||||||| ACAGCAGAGCAGTGTGCCCAGAGa Usp24 rno-miR-326 1468 1494 uGACCUCC------UUCCCGGGUCUCc ||| ||| ||| |||::||| gCTGAAGGCCTTAAAAGAGCCTGGAGt Usp24 rno-miR-327 863 882 ugggaguACG-GGGAGUUCc ||| |||||:|| ttagtgtTGCTCCCTCGAGc Usp24 rno-miR-328 1571 1593 ugcCUUCCCGUCU-CUCCCGGUC ||| ::|| | ||||||| ggaGAATTCTGGATGTGGGCCAG Usp24 rno-miR-329 418 442 uuUUUCCAAUCG-AC--CCACACaa ||||||| | || || ||| gtAAAGGTTTTCTTGTTGGAGTGca Usp24 rno-miR-331 1486 1507 aaGAUCCUAUCC-GGGUCCCCg ||:| :|:|| ||||| | gcCTGGAGTGGGAGCCAGGAGt Usp24 rno-miR-337 632 654 UUUCCGUAGUAUAUCCUCGACUU ||| ||| :||| |:||||:| AAAAGCAAGGTATTAGGGCTGGA Usp24 rno-miR-341 722 742 UGACUGGCUGGCUGGCUAGCU || | | ||:| :||||| || ACAGTCAGATCCGCCGATGGA Usp24 rno-miR-342 428 450 cugcCCACGCUAAAGACACACUCU | || || | | |||||||| tcttGTTG-GAGTGCAGTGTGAGA Usp24 rno-miR-342 1491 1516 CU-GCCCACGCUAAAGACAC-ACUCu || :||| || | |||| |||| GAGTGGGAGCCAGGAGTGTGATGAGg Usp24 rno-miR-343 1542 1563 AGACCCGUGUGCCUCC--CUCU ||||| ||| :||||| |:|| TCTGGCCACTTGGAGGCTGGGA Usp24 rno-miR-345 695 715 cgugaccuGAUCCCCAGUCgu || |||||||| gcttcctcCTTGGGGTCAGtc Usp24 rno-miR-346 1553 1577 uCUCCGUCCGUGAGU--CCGUCUgu ||||| || | |:: || ||| gGAGGCTGGGAGTTGTTGGGAGAat Usp24 rno-miR-34c 1358 1384 CGUU----AGUCGAUUGAUGUGACGGa |||| |||| |:| :: ||||| GCAACGGGTCAGAGAGCAGTCCTGCCa Usp24 rno-miR-351 287 311 gUCCGAGUUUC-CCGAGGAGUCCCu | | ||||| | ||||||| tACGAACAAAGAAGAAACTCAGGGt Usp24 rno-miR-351 1519 1548 GUC-CGA-GUUUCC---C-GAGGAGUCCcu | | ||| ||:||| | ||:||| || CTGTGCTCCAGAGGAGAGACTTCTCTGGcc Usp24 rno-miR-352 1130 1154 AUGAUACGUU----GGAUGAUGAga ||||| |||| |||:||:|| TACTAGGCAAGTGTCCTGCTGCTaa Usp24 rno-miR-363-5p 458 476 uUUAACGUAGCACUAGGUGGgc |:|||| :||| ||||| gAGTTGC--TGTG-GCCACCat Usp24 rno-miR-376a 651 670 gcacCUAAAAGGAGAUGCua ||| |||:|||:|| tggaGATCTTCTTCTGCGtc Usp24 rno-miR-378 1485 1506 uguGUCCUGGACCUCAGUCCUC | ||| : |||| |||||| agcCTGGAGTGGGAGCCAGGAG Usp24 rno-miR-379 1593 1611 augCAAGGUAUCAGAUGgu || ||| |||||| gctGTCCCAGCGTCTACtg Usp24 rno-miR-383 772 799 ucGGUGU-----CAGUGGAA-GACUAGA ||||| ||::|||| |||:||| ctCCACAATACTGTTGCCTTGCTGGTCT Usp24 rno-miR-421 1498 1518 guuGUUUGUAAAUUACUCCgg ||:: :| |:|||||| agcCAGGAGTGTGATGAGGac Usp24 rno-miR-424 1130 1153 AGGUUUUGUACUUA--ACGACGAc | | |::|| | :| ||||||| TACTAGGCAAGTGTCCTGCTGCTa Usp24 rno-miR-424 773 795 AGGUUUUGU-ACUUAACG--ACGAC |||| ||:| || |||| ||||| TCCACAATACTG--TTGCCTTGCTG Usp24 rno-miR-449 1598 1620 uGGUC---GAUUGUUAUGUGACggu |||| ||| :::|:||||| cCCAGCGTCTACTGGTGCACTGa-- Usp24 rno-miR-483 1480 1509 UGUUCU--GCCCUC-CCC----UCCUCACu | |||| | |||| ||| ||||||| AAAAGAGCCTGGAGTGGGAGCCAGGAGTGt Usp24 rno-miR-497 1130 1153 AUGUUUGGUGUCAC---ACGACGAc ||| |: || |||| ||||||| TACTAGGCA-AGTGTCCTGCTGCTa Usp24 rno-miR-499 1461 1481 uuuGUAGUGACGUUCAGAAUU |:||:||| |:| ||||| tctCGTCGCTGAAGGCCTTAA Usp24 rno-miR-501 223 247 aaAGUGGGUCC---CUGUUUCCuaa |:|||| | |:|||||| caTTACCCTTGCATGGCAAAGGtga Usp24 rno-miR-503 1127 1153 gUCAUGA------CA-AGGGCGACGAU | |||| || |||:||||||| gATTACTAGGCAAGTGTCCTGCTGCTA Usp24 rno-miR-505 1495 1515 CCUUUGGUCGUU-CACAACUg ||:|:|||| |: ||| ||| GGGAGCCAGGAGTGTGATGAg Usp24 rno-miR-540 1526 1549 GG--UCCUAGCUG--GAGACUGGa || |||| ||| |||||:|| CCAGAGGAGAGACTTCTCTGGCCa Usp24 rno-miR-7 783 803 uuguuuuAGUGAUCAGAAGGU |::||:||||| || tgttgccTTGCTGGTCTTGCA Usp24 rno-miR-7* 1550 1570 auACCGUCUGACACUAAACAAC ||| ||:||| || |||||| ctTGG-AGGCTGGGAGTTGTTG Usp24 rno-miR-9 1403 1430 aGUAUGUCGAUCU------AUUGGUUUCU | |||||| ||| |: |||:||| gCTTACAGC-AGAGCAGTGTGCCCAGAGA Usp24 rno-miR-93 1022 1042 gAUGGACGUGCUUGUCGUGAAAc | :||||| | |||||||| gTTTCTGCA--ATGAGCACTTTt Usp24 rno-miR-98 148 172 uUGU-UAUGU--UGAAUGAUGGAGU ||: :|||| | | |||||:||| gACGTGTACAGTAGTGACTACTTCA Usp24 rno-miR-106b 1035 1042 U------------------------AGACGUGACAGUCGUGAAAU |||||| | |||||||| AUGGAGAUGGUGGUGUACUGCUGUUUCUGCAA--UGAGCACUUUU Usp24 rno-miR-125a 304 311 GUGUCCAA--------------------UUUCCCAGAGUCCCU :||| ||||||| UCCUUUUCCAAACCUACCUACGAACAAAGAAGAAACUCAGGGU Usp24 rno-miR-125b 304 311 AG---------------------UGUUCAAUCCCAGAGUCCCU |||| || ||||||| UCCUUUUCCAAACCUACCUACGAACAAAGAAGAAACUCAGGGU Usp24 rno-miR-150 1568 1575 ---------------GUGA-CCA-UGUUCC----CAACCCUCU |||| || :| :|| ||||||||| AGAGACUUCUCUGGCCACUUGGAGGCUGGGAGUUGUUGGGAGAA Usp24 rno-miR-151* 813 820 --------------------------AUGAUCUGACACUCGAGGAGCU ||| |||| || ||||||| AAUACUGUUGCCUUGCUGGUCUUGCAUAC-AGAC-GU---CUCCUCGC Usp24 rno-miR-15b 1146 1153 AC--------------------AUUUGG-UACUACACGACGAU ||::| :|| |||||||| UUUGAGACAGAAAAUGGAUUACUAGGCAAGUGUCCUGCUGCUAA Usp24 rno-miR-16 1146 1153 G------------------------CGGUUAUAAAUGCACGACGAU || |:|:| | |||||||| UUUGAGACAGAAAAUGGAUUACUAGGCAAGUGU---CCUGCUGCUAA Usp24 rno-miR-17 1035 1042 ----------------UGAUG-----GACGUGACAUUCGUGAAAC |||:| ||||| |:|||||||| AUGGAGAUGGUGGUGUACUGCUGUUUCUGCAA--UGAGCACUUUU Usp24 rno-miR-195 1146 1153 ------------------------CGGUUAUAAAGACACGACGAU | ||| || |||||||| UUUGAGACAGAAAAUGGAUUACUAGGCAAGUG-UCC-UGCUGCUAA Usp24 rno-miR-207 480 487 UUCC---------CUCCUC----UCGGU-------CCUCUUCG ||| | :|||| ||||||| GUGAGAGAAGUUCGAGUUGCUGUGGCCACCAUUCUGGAGAAGA Usp24 rno-miR-20a 1035 1042 -----------------GAUG-----GACGUGAUAUUCGUGAAAU ||:| ||||| ||:|||||||| AUGGAGAUGGUGGUGUACUGCUGUUUCUGCA--AUGAGCACUUUU Usp24 rno-miR-20b 1035 1042 U------------------------GGACGUGAUACUCGUGAAAC :||||| ||||||||||| AUGGAGAUGGUGGUGUACUGCUGUUUCUGCA--AUGAGCACUUUU Usp24 rno-miR-214 1144 1151 GA-------------------------CGGACAGACAC-GGACGACA || ||| ||||||| UAUUUGAGACAGAAAAUGGAUUACUAGGCAA----GUGUCCUGCUGC Usp24 rno-miR-298 883 890 CCUUCU-----------------UGUCGGGA-----GGAGACGG :| |||| |||||||: AACAACGACCGCCUAUUAGUGUUGCU-CCCUCGAGCCCUCUGCUA Usp24 rno-miR-300 230 237 CUUCUCUCGAAC---------------------GGGAACGUAU |||||||||: GUUGAAUGCUACUAAGUUAAAGCACCCACAUUACCCUUGCAUGG Usp24 rno-miR-300 798 805 CUUCUCUC------------------GAACG---GGAACGUAU ||||| :|||||||| UUUGGGAAUCUCCACAAUACUGUUGCCUUGCUGGUCUUGCAUAC Usp24 rno-miR-326 1423 1430 UG--ACCUC------------------CUUC-C-CGGGUCUCC ||||| | || | |||||||| AGAAUGGAGAGCGACGCUUACAGCAGAGCAGUGUGCCCAGAGA Usp24 rno-miR-342 443 450 CU------------------------GCC-CACGCUAAAGACACACUCU :|| |||| |||||||| ACGAGAAUUGGUAAAGGUUUUCUUGUUGGAGUGCA------GUGUGAGAG Usp24 rno-miR-351 304 311 GUCCGA------------------GUUUCCCGAG-GAGUCCCU ||||| ||||||| UCCUUUUCCAAACCUACCUACGAACAAAGAAGAAACUCAGGGU Usp24 rno-miR-424 1146 1153 AGGUUUUGU-----ACUUA----------------ACGACGAC |: |:||| ||:|| ||||||| UUUGAGACAGAAAAUGGAUUACUAGGCAAGUGUCCUGCUGCUA Usp24 rno-miR-483 1502 1509 UG---------------UUCUGCCCUC-CCC----UCCUCACU :|| | |||| ||| ||||||| CGCUGAAGGCCUUAAAAGAGCCUGGAGUGGGAGCCAGGAGUGU Usp24 rno-miR-497 1146 1153 -------------------AUG-UUUGGUGUCAC---ACGACGAC ||| |::| |||| ||||||| UUUGAGACAGAAAAUGGAUUACUAGGCA--AGUGUCCUGCUGCUA Usp24 rno-miR-93 1035 1042 -----------------GAUG-----GACGUGCUUGUCGUGAAAC ||:| ||||| |||||||| AUGGAGAUGGUGGUGUACUGCUGUUUCUGCAAUG--AGCACUUUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp24 RAID00301946 rno-miR-98-5p miRNA MIMAT0000819 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID00485030 rno-miR-106b-5p miRNA MIMAT0000825 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID00489775 rno-miR-3569 miRNA MIMAT0017849 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID00508797 rno-miR-141-5p miRNA MIMAT0017128 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID00586001 rno-let-7a-5p miRNA MIMAT0000774 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID00587843 rno-miR-6332 miRNA MIMAT0025073 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID00689971 rno-let-7d-5p miRNA MIMAT0000562 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID00708493 rno-miR-6321 miRNA MIMAT0025059 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID00735912 rno-let-7i-5p miRNA MIMAT0000779 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01012819 rno-miR-105 miRNA MIMAT0012825 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01155113 rno-let-7c-5p miRNA MIMAT0000776 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01193459 rno-miR-124-3p miRNA MIMAT0000828 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01318219 rno-miR-133c miRNA MIMAT0017872 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01464582 rno-miR-214-3p miRNA MIMAT0000885 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01488617 rno-miR-761 miRNA MIMAT0012853 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01515660 rno-miR-3064-3p miRNA MIMAT0035738 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01620966 rno-miR-532-3p miRNA MIMAT0005323 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01668313 rno-miR-30d-3p miRNA MIMAT0004722 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01751058 rno-miR-28-5p miRNA MIMAT0000800 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01818940 rno-miR-294 miRNA MIMAT0012848 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01823327 rno-miR-23b-5p miRNA MIMAT0017099 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01826729 rno-miR-30e-3p miRNA MIMAT0004720 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID01991290 rno-let-7f-5p miRNA MIMAT0000778 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02092054 rno-miR-137-3p miRNA MIMAT0000843 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02101129 rno-miR-499-5p miRNA MIMAT0003381 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02202610 rno-miR-3541 miRNA MIMAT0017795 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02308683 rno-miR-3558-5p miRNA MIMAT0017825 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02388648 rno-miR-300-5p miRNA MIMAT0004743 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02602567 rno-miR-20a-5p miRNA MIMAT0000602 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02815810 rno-miR-3557-5p miRNA MIMAT0017819 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02818694 rno-miR-103-2-5p miRNA MIMAT0017113 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02834128 rno-miR-326-5p miRNA MIMAT0017028 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02840668 rno-let-7g-5p miRNA MIMAT0035719 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02904986 rno-let-7b-5p miRNA MIMAT0000775 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02915687 rno-miR-30a-3p miRNA MIMAT0000809 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID02959477 rno-miR-708-5p miRNA MIMAT0005331 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03008545 rno-miR-672-3p miRNA MIMAT0017312 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03033707 rno-miR-93-5p miRNA MIMAT0000817 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03041602 rno-miR-140-5p miRNA MIMAT0000573 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03048066 rno-miR-1188-3p miRNA MIMAT0017855 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03074138 rno-miR-20b-5p miRNA MIMAT0003211 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03197545 rno-miR-27b-5p miRNA MIMAT0017101 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03269484 rno-miR-17-5p miRNA MIMAT0000786 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03415357 rno-miR-383-3p miRNA MIMAT0017197 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03415408 rno-miR-1224 miRNA MIMAT0012827 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03431610 rno-miR-291a-3p miRNA MIMAT0000895 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03560076 rno-miR-130a-5p miRNA MIMAT0017121 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03688139 rno-miR-365-5p miRNA MIMAT0017184 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03722160 rno-let-7e-5p miRNA MIMAT0000777 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03939817 rno-miR-1956-3p miRNA MIMAT0035736 Usp24 mRNA 313427 Prediction 0.1828 Usp24 RAID03948028 rno-miR-298-5p miRNA MIMAT0000900 Usp24 mRNA 313427 Prediction 0.1828