DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 287280 Skp1 agAGACGUCCGGGACACGAAACg |:| | ::|| |||||| uuUUUUAAUCUUCUCAGCUUUGa 2 22 511 533 [rn4:10:37680210-37680232:+] 0.5679 121 6 -12.16 -0.1038 MIMAT0000574 rno-miR-140* 287280 Skp1 ggcaccaAGAUGGGAC-ACCAu ||||: ||| |||| uccgaccUCUAUGCUGCUGGUa 2 15 431 452 [rn4:10:37680130-37680151:+] 0.5679 122 0 -22.00 -0.3362 MIMAT0000576 rno-miR-336 287280 Skp1 ucUGAU-CUAU-ACCUUCCCAcu |||: | | | ||||||| ucACUGUAACACUAGAAGGGUug 3 20 11 33 [rn4:10:37679710-37679732:+] 0.7343 129 0 -12.88 -0.1189 MIMAT0000603 rno-miR-20a* 287280 Skp1 acauucacgagcauUACGUCa |||||| cuuaggagagaaguAUGCAGa 2 8 334 354 [rn4:10:37680033-37680053:+] 0.6095 120 6 -10.58 -0.3121 MIMAT0000607 rno-miR-7a* 287280 Skp1 uaccgucugacacUAAACAAca ||||||| aaauuaacaaaacAUUUGUUca 3 10 359 380 [rn4:10:37680058-37680079:+] 0.6095 125 0 -3.00 -0.1427 MIMAT0004708 rno-miR-9* 287280 Skp1 ugaaagccAAUAGAUCGAAAua ||:| ||||||| ucaacaauUUGU-UAGCUUUuc 3 15 595 615 [rn4:10:37680294-37680314:+] 0.5679 132 0 -7.99 -0.1239 MIMAT0004716 rno-miR-28* 287280 Skp1 aggUCCU--CGAGUGUUA-GAUCAc |||: |:|| ||| ||||| agaAGGGUUGUUCCAAAUGCUAGUu 2 20 24 48 [rn4:10:37679723-37679747:+] 0.7343 122 0 -15.24 -0.9103 MIMAT0004787 rno-miR-543 287280 Skp1 cgcuUUUUGUGCGCCCGUUGAa ::|||| ||||||| aacuGGAACA---AGGCAACUu 2 19 390 408 [rn4:10:37680089-37680107:+] 0.6095 142 7 -14.97 -0.8880 MIMAT0005280 rno-miR-743b 287280 Skp1 agauaagucAUACCACAGAAAg |:| ||||||| cugaggccuUGUUUUGUCUUUu 2 14 486 507 [rn4:10:37680185-37680206:+] 0.5679 145 7 -9.52 -1.0122 MIMAT0005332 rno-miR-708* 287280 Skp1 gaUC-UUCGAGUGUCAGAUCAAc || :| :|| | ||||||| aaAGUGAUUUCUCCCUCUAGUUc 2 21 257 279 [rn4:10:37679956-37679978:+] 0.6095 151 7 -10.54 -0.4120 MIMAT0012826 rno-miR-220 287280 Skp1 uccagAGACUGUGACACC-ACc || ||| |||||| || acagaUCAGAC-CUGUGGCUGa 2 17 130 150 [rn4:10:37679829-37679849:+] 0.5504 122 0 -16.52 -0.5335 MIMAT0012827 rno-miR-1224 287280 Skp1 gagGUGGAGGGGUCAGGAGUg ||| ||:: ||||||| aaaCACAGCCUU-GUCCUCAc 2 19 92 111 [rn4:10:37679791-37679810:+] 0.7343 152 7 -27.04 -0.8179 MIMAT0012831 rno-miR-544 287280 Skp1 cucgaacgaUUUUUACGUCUUa ||: |||||||| uuaggagagAAGUAUGCAGAAa 2 14 335 356 [rn4:10:37680034-37680055:+] 0.6095 153 7 -13.88 -1.3120 MIMAT0012838 rno-miR-653 287280 Skp1 guCAUCUCUUACA--AAGUUGUg | :|:|| ||| |||||| gaGGGGGGACUGUAACUCAACAa 2 20 579 601 [rn4:10:37680278-37680300:+] 0.5679 126 6 -15.28 -0.1035 MIMAT0001619 rno-miR-322 287280 Skp1 agguuUUGUACUUAACGACGAc :|| | | ||||||| cuuccGACCUCUA-UGCUGCUg 2 18 429 449 [rn4:10:37680128-37680148:+] 0.5679 143 7 -16.87 -0.2422 MIMAT0000552 rno-miR-301a 287280 Skp1 cgaAACUGUUAUGAU-AACGUGAc || |||:||| ||||||| uugUUCCAAAUGCUAGUUGCACUg 2 21 31 54 [rn4:10:37679730-37679753:+] 0.7343 163 7 -19.85 -0.8755 MIMAT0000579 rno-miR-148b-3p 287280 Skp1 uguUUCAAGACACUACGUGACu || | || | ||||||| uccAAAUGCU-AGUUGCACUGc 2 20 35 55 [rn4:10:37679734-37679754:+] 0.7343 149 7 -13.56 -1.0608 MIMAT0000579 rno-miR-148b-3p 287280 Skp1 uguUUCAAGACACUACGU-GACu ||| || ||| |||| ||| gguAAGCUC-GUG-UGCAGCUGg 2 20 449 469 [rn4:10:37680148-37680168:+] 0.5679 123 0 -16.41 -0.1220 MIMAT0004650 rno-miR-340-5p 287280 Skp1 uuagucagaguaacgAAAUAUu |||||| aguugcacugcucugUUUAUAa 2 8 45 66 [rn4:10:37679744-37679765:+] 0.7343 120 6 -9.19 -0.2814 MIMAT0000606 rno-miR-7a 287280 Skp1 ugUUGUUUUAGUGAUCAGAAGGu |||:: : |: ||||||| uuAACGGUG-CGGAUGUCUUCCg 2 22 413 434 [rn4:10:37680112-37680133:+] 0.5679 143 7 -19.91 -0.1634 MIMAT0000780 rno-miR-7b 287280 Skp1 ugUUGUUUUAGUGUUCAGAAGGu |||:: : |: | ||||||| uuAACGGUG-CGGAUGUCUUCCg 2 22 413 434 [rn4:10:37680112-37680133:+] 0.5679 151 7 -20.84 -0.1634 MIMAT0000784 rno-miR-15b 287280 Skp1 acauuugguacuACACGACGAu | ||||||| ucuuccgaccucUAUGCUGCUg 2 11 428 449 [rn4:10:37680127-37680148:+] 0.5679 142 7 -14.99 -0.2617 MIMAT0000785 rno-miR-16 287280 Skp1 gcGGUUAUAAAUGCACGACGAu ||:| | || ||||||| uuCCGACCUCUA--UGCUGCUg 2 21 430 449 [rn4:10:37680129-37680148:+] 0.5679 149 7 -15.17 -0.2466 MIMAT0000804 rno-miR-30c 287280 Skp1 cgacucucacauccuACAAAUGu ||||||: cuaguugcacugcucUGUUUAUa 2 9 43 65 [rn4:10:37679742-37679764:+] 0.7343 124 0 -8.25 -0.1787 MIMAT0000805 rno-miR-30e 287280 Skp1 gaaGGUCA--GUUCC--UACAAAUGu |:||| || | ||||||: augCUAGUUGCACUGCUCUGUUUAUa 2 20 40 65 [rn4:10:37679739-37679764:+] 0.7343 125 0 -11.36 -0.1821 MIMAT0000806 rno-miR-30b-5p 287280 Skp1 ucgacucacauccuACAAAUGu ||||||: uaguugcacugcucUGUUUAUa 2 9 44 65 [rn4:10:37679743-37679764:+] 0.7343 124 0 -10.16 -0.1787 MIMAT0000807 rno-miR-30d 287280 Skp1 gaaGGUCAGC----CCCUACAAAUGu |:|||:| | ||||||: augCUAGUUGCACUGCUCUGUUUAUa 2 20 40 65 [rn4:10:37679739-37679764:+] 0.7343 126 0 -14.30 -0.1821 MIMAT0000808 rno-miR-30a 287280 Skp1 gaaGGUCAGC-UCCU---ACAAAUGu |:|||:| | : ||||||: augCUAGUUGCACUGCUCUGUUUAUa 2 20 40 65 [rn4:10:37679739-37679764:+] 0.7343 125 0 -14.40 -0.1821 MIMAT0000824 rno-miR-103 287280 Skp1 aguaucgggacauGUUACGACGa | ||||||| ugucuuccgaccuCUAUGCUGCu 2 11 426 448 [rn4:10:37680125-37680147:+] 0.5679 142 7 -15.89 -0.1995 MIMAT0000826 rno-miR-107 287280 Skp1 acuaucgggacauGUUACGACGa | ||||||| ugucuuccgaccuCUAUGCUGCu 2 11 426 448 [rn4:10:37680125-37680147:+] 0.5679 142 7 -15.89 -0.1995 MIMAT0000834 rno-miR-128 287280 Skp1 uuucucUGGCCAAGUGACAcu :|| | ||||||| -acuguGCCUG-UCACUGUaa 3 16 1 19 [rn4:10:37679700-37679718:+] 0.7343 129 0 -11.65 -0.1264 MIMAT0000836 rno-miR-130a 287280 Skp1 uacGGGAAAAUUGU-AACGUGAc :|| |: :| ||||||| uguUCCAAAUGCUAGUUGCACUg 2 20 32 54 [rn4:10:37679731-37679753:+] 0.7343 142 7 -16.95 -0.8789 MIMAT0000837 rno-miR-130b 287280 Skp1 uacgggaaaguAGUAACGUGAc | :||||||| guuccaaaugcUAGUUGCACUg 2 12 33 54 [rn4:10:37679732-37679753:+] 0.7343 143 7 -16.95 -0.8823 MIMAT0000851 rno-miR-145 287280 Skp1 ucccUAAGGAC---CCUUUUGACCUg :||| || |:|||||||| auuuGUUCAUGAAUCGGAAACUGGAa 2 20 372 397 [rn4:10:37680071-37680096:+] 0.6095 154 7 -16.21 -1.0152 MIMAT0000853 rno-miR-150 287280 Skp1 gugacCAUGUUCCCAACCCUCu || :: || ||||||| acccaGUUUGUGGUUUGGGAGg 2 18 561 582 [rn4:10:37680260-37680281:+] 0.5679 153 7 -17.25 -0.1747 MIMAT0000854 rno-miR-152 287280 Skp1 ggUUCAAGA-CAGUACGUGACu || | || || ||||||| ccAAAUGCUAGU--UGCACUGc 2 20 36 55 [rn4:10:37679735-37679754:+] 0.7343 147 7 -15.52 -1.0403 MIMAT0000855 rno-miR-153 287280 Skp1 cuagugaaaacacugAUACGUu |||||| aacuuaggagagaagUAUGCAg 2 8 332 353 [rn4:10:37680031-37680052:+] 0.6095 120 6 -11.10 -0.2838 MIMAT0000864 rno-miR-187 287280 Skp1 ggccgacguUGUGUUCUGUGcu | | ||||||| uuuucaauuAAAAAAGACACuu 3 14 611 632 [rn4:10:37680310-37680331:+] 0.5679 129 0 -10.18 -0.2505 MIMAT0000870 rno-miR-195 287280 Skp1 cgguuauaaAGACACGACGAu ||| ||||||| cuuccgaccUCUAUGCUGCUg 2 13 429 449 [rn4:10:37680128-37680148:+] 0.5679 152 7 -19.21 -0.2641 MIMAT0000887 rno-miR-217 287280 Skp1 uaggUCAGUCAAGGACUACG-UCAu :||: ||||| |||| ||| gaagGGUU-GUUCCAAAUGCUAGUu 2 21 25 48 [rn4:10:37679724-37679747:+] 0.7343 126 0 -16.49 -0.9036 MIMAT0000887 rno-miR-217 287280 Skp1 uaggucagucaaggacUACGUCau |||||| aacuuaggagagaaguAUGCAGaa 3 9 332 355 [rn4:10:37680031-37680054:+] 0.6095 120 0 -10.19 -0.3769 MIMAT0000903 rno-miR-320 287280 Skp1 agCGGGAGAGUU----GGGUCGAAAa | ::|:|:|| |:||||||| uuGGUUUUUUAAUCUUCUCAGCUUUg 2 21 507 532 [rn4:10:37680206-37680231:+] 0.5679 151 7 -18.03 -0.9689 MIMAT0001534 rno-miR-448 287280 Skp1 uacccuguaggaUGUAUACGUu | :|||||| aacuuaggagagAAGUAUGCAg 2 11 332 353 [rn4:10:37680031-37680052:+] 0.6095 126 6 -12.49 -0.2790 MIMAT0001628 rno-miR-433 287280 Skp1 uguggcuccucggguAGUACUa |||||| uaacaaaacauuuguUCAUGAa 2 8 363 384 [rn4:10:37680062-37680083:+] 0.6095 120 6 -7.27 -0.1315 MIMAT0003176 rno-miR-539 287280 Skp1 ugugugGUUCCUAUUAAAGAGg :|| | |:||||||| uuucugUAAAG-UGAUUUCUCc 2 17 250 270 [rn4:10:37679949-37679969:+] 0.6095 150 7 -13.69 -0.5007 MIMAT0003179 rno-miR-542-3p 287280 Skp1 aaagucaauaguuaGACAGUGu ||||||| -------acugugcCUGUCACu 2 9 1 15 [rn4:10:37679700-37679714:+] 0.7343 140 7 -10.71 -0.8130 MIMAT0003196 rno-miR-376b-3p 287280 Skp1 uuCACCUAC---AAGGAGAUACUa |||| || |||:||||||| cuGUGGCUGAGUUUCUUCUAUGAg 2 20 141 164 [rn4:10:37679840-37679863:+] 0.5504 166 7 -20.03 -0.3041 MIMAT0003201 rno-miR-382 287280 Skp1 gcuuagguggugcUUGUUGAAg |||||||| gcauuguaaauaaAACAACUUa 2 10 316 337 [rn4:10:37680015-37680036:+] 0.6095 145 7 -8.73 -1.2240 MIMAT0003383 rno-miR-497 287280 Skp1 auGUUUGGUGUCACACGACGAc | :||| | | ||||||| uuCCGACCUC--UAUGCUGCUg 2 21 430 449 [rn4:10:37680129-37680148:+] 0.5679 149 7 -18.18 -0.2572 MIMAT0005304 rno-miR-301b 287280 Skp1 cgaAACUGUUAUGGU-AACGUGAc || |||:|:| ||||||| uugUUCCAAAUGCUAGUUGCACUg 2 21 31 54 [rn4:10:37679730-37679753:+] 0.7343 159 7 -19.16 -0.8755 MIMAT0005309 rno-miR-384-5p 287280 Skp1 ugUAACGGAUC-CUUAA-CAAAUGu :|||||||| || || |||||| acGUUGCCUAGAGACUUAGUUUACu 2 22 536 560 [rn4:10:37680235-37680259:+] 0.5679 148 6 -25.15 -0.4707 MIMAT0005309 rno-miR-384-5p 287280 Skp1 ugUAACG-GAUCCUUAACAAAUGu :|||| || | ||||||: uaGUUGCACU--GCUCUGUUUAUa 2 22 44 65 [rn4:10:37679743-37679764:+] 0.7343 129 0 -13.19 -0.1804 MIMAT0005341 rno-miR-488 287280 Skp1 cugguucuuugUCGGAAAGUu ||||||||| uaacuucagugAGCCUUUCAa 2 11 290 310 [rn4:10:37679989-37680009:+] 0.6095 150 7 -16.01 -0.9306

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101122 Skp1 Rattus norvegicus 287280

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Skp1 RAID00032853 rno-miR-30d-5p miRNA MIMAT0000807 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00137432 rno-miR-340-5p miRNA MIMAT0004650 Skp1 mRNA 287280 Prediction 0.2202 Skp1 RAID00165122 rno-miR-743b-3p miRNA MIMAT0005280 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00290481 rno-miR-544-5p miRNA MIMAT0017359 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00569329 rno-miR-542-3p miRNA MIMAT0003179 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00572625 rno-miR-376b-3p miRNA MIMAT0003196 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00587092 rno-miR-187-3p miRNA MIMAT0000864 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00762962 rno-miR-30c-5p miRNA MIMAT0000804 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00850812 rno-miR-7a-5p miRNA MIMAT0000606 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00875058 rno-miR-30b-5p miRNA MIMAT0000806 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00875126 rno-miR-126b miRNA MIMAT0017843 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00917038 rno-miR-7b miRNA MIMAT0000780 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00982326 rno-miR-449a-3p miRNA MIMAT0017181 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID00989109 rno-miR-30a-5p miRNA MIMAT0000808 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID01015909 rno-miR-15b-5p miRNA MIMAT0000784 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID01035932 rno-miR-488-3p miRNA MIMAT0005341 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID01037264 rno-miR-217-5p miRNA MIMAT0000887 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID01226248 rno-miR-3569 miRNA MIMAT0017849 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID01299544 rno-miR-301b-3p miRNA MIMAT0005304 Skp1 mRNA 287280 Prediction 0.2202 Skp1 RAID01308787 rno-miR-195-5p miRNA MIMAT0000870 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID01444254 rno-miR-107-3p miRNA MIMAT0000826 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID01510642 rno-miR-145-5p miRNA MIMAT0000851 Skp1 mRNA 287280 Prediction 0.2202 Skp1 RAID01684349 rno-miR-6315 miRNA MIMAT0025050 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID01797893 rno-miR-382-5p miRNA MIMAT0003201 Skp1 mRNA 287280 Prediction 0.2202 Skp1 RAID01844410 rno-miR-539-5p miRNA MIMAT0003176 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID02321131 rno-miR-148b-3p miRNA MIMAT0000579 Skp1 mRNA 287280 Prediction 0.2202 Skp1 RAID02358366 rno-miR-883-5p miRNA MIMAT0017294 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID02481548 rno-miR-150-5p miRNA MIMAT0000853 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID02579174 rno-miR-497-5p miRNA MIMAT0003383 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID02933057 rno-miR-322-5p miRNA MIMAT0001619 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID03085387 rno-miR-103-3p miRNA MIMAT0000824 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID03180164 rno-miR-448-3p miRNA MIMAT0001534 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID03341386 rno-miR-16-5p miRNA MIMAT0000785 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID03641862 rno-miR-152-3p miRNA MIMAT0000854 Skp1 mRNA 287280 Prediction 0.2202 Skp1 RAID03687507 rno-miR-130a-3p miRNA MIMAT0000836 Skp1 mRNA 287280 Prediction 0.2202 Skp1 RAID03875144 rno-miR-128-3p miRNA MIMAT0000834 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID03900570 rno-miR-301a-3p miRNA MIMAT0000552 Skp1 mRNA 287280 Prediction 0.2202 Skp1 RAID03923593 rno-miR-384-5p miRNA MIMAT0005309 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID03957573 rno-miR-153-3p miRNA MIMAT0000855 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID03971736 rno-miR-148a-3p miRNA MIMAT0035725 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID03972115 rno-miR-320-3p miRNA MIMAT0000903 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID03986228 rno-miR-30e-5p miRNA MIMAT0000805 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID04037658 rno-miR-433-3p miRNA MIMAT0001628 Skp1 mRNA 287280 Prediction 0.1828 Skp1 RAID04039055 rno-miR-130b-3p miRNA MIMAT0000837 Skp1 mRNA 287280 Prediction 0.2202