DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 117553 Uba3 agagacguccgggACACGAAAcg | |||||| uucauagaaauaaUAUGCUUUau 3 11 27 49 [rn4:4:131903166-131903188:-] 0.5507 122 0 -5.56 -0.1182 MIMAT0000610 rno-miR-352 117553 Uba3 auGAUACGUUGGAUGAUGAGa :| | || :|||||||| auUUCUUCA--UUACUACUCa 2 20 494 512 [rn4:4:131902703-131902721:-] 0.5604 148 7 -11.85 -1.2539 MIMAT0004708 rno-miR-9* 117553 Uba3 ugaaagccaauagauCGAAAUa |||||| ucauagaaauaauauGCUUUAu 2 8 28 49 [rn4:4:131903166-131903187:-] 0.5507 120 6 -5.74 -0.1426 MIMAT0004711 rno-miR-21* 117553 Uba3 cugucggguagcugaCGACAAc |||||| uuaaaccaagacaugGCUGUUc 2 8 669 690 [rn4:4:131902525-131902546:-] 0.5604 120 6 -13.94 -0.1214 MIMAT0003152 rno-miR-22* 117553 Uba3 auUUCGAACGGUGACUUCUUGa || : ||: || |||||| ggAAUUAUGU--CUUAAGAACa 2 21 430 449 [rn4:4:131902766-131902785:-] 0.5604 121 6 -8.25 -0.2619 MIMAT0003153 rno-miR-24-1* 117553 Uba3 gaCUAUAGUCGAGUCAUCCGUg ||||||| | |||||| gaGAUAUCA-AAC-AUAGGCAa 2 21 475 494 [rn4:4:131902721-131902740:-] 0.5604 124 6 -18.05 -0.1498 MIMAT0005441 rno-miR-24-2* 117553 Uba3 ugacaaagucgagucAUCCGUg |||||| uagagauaucaaacaUAGGCAa 2 8 473 494 [rn4:4:131902721-131902742:-] 0.5604 120 6 -11.12 -0.1630 MIMAT0004714 rno-miR-26b* 117553 Uba3 cucGGUUCAUUACCUCUUGUcc ::| || | |||||| gaaUUAUGU-CUUAAGAACAuu 3 20 431 451 [rn4:4:131902764-131902784:-] 0.5604 121 0 -6.12 -0.1419 MIMAT0000831 rno-miR-126* 117553 Uba3 gcGCAUGGU-UUUCAUUAUUac :| ||:| | |||||| uuUGCACUAUUUAUUAAUAAaa 3 20 727 748 [rn4:4:131902467-131902488:-] 0.5604 126 0 -4.00 -0.2845 MIMAT0000847 rno-miR-142-5p 117553 Uba3 ucaUCACGAAAGA-UGAAAUAc | | :|||:| ||||||| augACUCUUUUUUAACUUUAUa 2 19 185 206 [rn4:4:131903009-131903030:-] 0.5604 157 7 -8.34 -1.2822 MIMAT0000847 rno-miR-142-5p 117553 Uba3 ucaucacgaaAGAUGAAAUAc | |:|||||| auagaaauaaUAUGCUUUAUa 2 12 30 50 [rn4:4:131903165-131903185:-] 0.5507 131 6 -6.50 -0.2424 MIMAT0004738 rno-miR-199a-3p 117553 Uba3 auugGUU--ACACGU-CUGAUGAca ||| | | || |||||| uaggCAAUUUCUUCAUUACUACUca 3 19 488 512 [rn4:4:131902703-131902727:-] 0.5604 124 0 -8.27 -0.2170 MIMAT0005446 rno-miR-219-2-3p 117553 Uba3 ugucUA-CAGGUCGGUGU-UAAGa || ||| | | ||| |||| uguuAUGGUCAAACAACAUAUUCc 2 19 351 374 [rn4:4:131902841-131902864:-] 0.5604 121 0 -8.22 -0.6619 MIMAT0000901 rno-miR-299 117553 Uba3 uacauacacccugcCAUUUGgu |||||| guccaugauaauuuGUAAACag 3 9 562 583 [rn4:4:131902632-131902653:-] 0.5604 120 0 -5.64 -0.1073 MIMAT0000901 rno-miR-299 117553 Uba3 uacauacacccugccAUUUGGu |||||| caguaugcacaaauuUAAACCa 2 8 655 676 [rn4:4:131902539-131902560:-] 0.5604 120 6 -12.46 -0.1122 MIMAT0000902 rno-miR-300-3p 117553 Uba3 cuucucucgaacggGAACGUAu ||||||| aacauauuccucagCUUGCAUu 2 9 365 386 [rn4:4:131902829-131902850:-] 0.5604 140 7 -9.31 -0.5236 MIMAT0000902 rno-miR-300-3p 117553 Uba3 cuUCUCUCGAACGGGA-ACGUAu | ||||: ||| ||||| uuAUAGAGUCAUACCUGUGCAUg 2 21 586 608 [rn4:4:131902607-131902629:-] 0.5604 120 0 -16.24 -1.0104 MIMAT0001320 rno-miR-421 117553 Uba3 guuguuuguaaaUUACUCCGg :||||||| aagagccgggaaGAUGAGGCa 2 10 66 86 [rn4:4:131903129-131903149:-] 0.5507 141 7 -13.45 -0.2177 MIMAT0001320 rno-miR-421 117553 Uba3 guuguuuguaaaUUACUCCgg ||||||| uucuugaauggaAAUGAGGaa 3 10 413 433 [rn4:4:131902782-131902802:-] 0.5604 125 0 -9.89 -0.1473 MIMAT0003113 rno-miR-489 117553 Uba3 cgacggUAUAUACACUACAGUAa || || ||||||||| aaggaaAUUUAAUUGAUGUCAUu 2 18 104 126 [rn4:4:131903089-131903111:-] 0.5507 161 7 -13.45 -0.8266 MIMAT0003175 rno-miR-543* 117553 Uba3 ucuucacguggcgcUUACAAa |||||| uaauaugcuuuauaAAUGUUa 2 8 37 57 [rn4:4:131903158-131903178:-] 0.5507 120 6 -5.49 -0.1123 MIMAT0003197 rno-miR-376a* 117553 Uba3 gaguaUCUUCCUCUUAGAUGg :||| |||||:| -----GGAAAAUAAAUCUGCa 2 17 1 16 [rn4:4:131903199-131903214:-] 0.4920 128 0 -8.15 -0.1858 MIMAT0003202 rno-miR-382* 117553 Uba3 uucacaacaggcACUUACUaa ||||||| auauauaaaaaaUGAAUGAcu 3 10 170 190 [rn4:4:131903025-131903045:-] 0.5604 125 0 -6.36 -0.1922 MIMAT0003207 rno-miR-369-3p 117553 Uba3 uuucuaGUUGGUACAUAAUAa :|| || ||||||| aauuugUAAACA-GUAUUAUa 2 16 571 590 [rn4:4:131902625-131902644:-] 0.5604 149 7 -6.31 -1.0705 MIMAT0003207 rno-miR-369-3p 117553 Uba3 uuUCUAGUUGGUACAU-AAUAa | ||: :|||||| |||| aaAUAUU-UUCAUGUAUUUAUu 2 20 617 637 [rn4:4:131902578-131902598:-] 0.5604 121 0 -9.20 -0.6069 MIMAT0003382 rno-miR-664 117553 Uba3 auccgaccccucaUUUACUUAu |||||||| acauauauauaaaAAAUGAAUg 2 10 166 187 [rn4:4:131903028-131903049:-] 0.5604 145 7 -7.64 -1.1630 MIMAT0005280 rno-miR-743b 117553 Uba3 agauaagucauaccACAGAAAg ||||||| agcaggacaaacacUGUCUUUu 2 9 319 340 [rn4:4:131902875-131902896:-] 0.5604 140 7 -10.10 -0.6012 MIMAT0005280 rno-miR-743b 117553 Uba3 agaUAAGUCAUACCACAGAAag || :| || |||||| gaaAUGAGGAAUUAUGUCUUaa 3 20 423 444 [rn4:4:131902771-131902792:-] 0.5604 131 0 -6.44 -0.1435 MIMAT0005327 rno-miR-672 117553 Uba3 agUGUGUGUCAUGUG-GUUGGAgu |||: | ||: : |||||| gaACAUUAAAUAUUUACAACCUga 3 22 445 468 [rn4:4:131902747-131902770:-] 0.5604 132 0 -12.60 -0.1628 MIMAT0012822 rno-miR-202 117553 Uba3 uuUCUUCAUA-UACGUAUCCuu |||: ||| | |||||| cuAGAGAUAUCAAACAUAGGca 3 20 472 493 [rn4:4:131902722-131902743:-] 0.5604 138 0 -11.47 -0.2310 MIMAT0012831 rno-miR-544 117553 Uba3 cuCGAACGAUU-UUUACGUCUUa |: | :||| | ||||||: guGUGUAUUAAUUAUUGCAGAGu 2 21 532 554 [rn4:4:131902661-131902683:-] 0.5604 135 0 -11.43 -0.1193 MIMAT0012838 rno-miR-653 117553 Uba3 gucaucucUUACAAAGUUGUg |||||||||||| aagaaauuAAUGUUUCAACAg 2 14 692 712 [rn4:4:131902503-131902523:-] 0.5604 165 7 -15.45 -0.7033 MIMAT0012849 rno-miR-295 117553 Uba3 cuucacacgGGGUGUAAACUCa |:::|||||||| auuccucagCUUGCAUUUGAGc 2 14 370 391 [rn4:4:131902824-131902845:-] 0.5604 153 7 -15.73 -0.2805 MIMAT0000552 rno-miR-301a 117553 Uba3 cgaaacuGUUAUGAUAACGUGAc ::||:|| ||||||| uuaucauUGAUGCUUUUGCACUa 2 17 713 735 [rn4:4:131902480-131902502:-] 0.5604 160 7 -13.83 -1.2426 MIMAT0000566 rno-miR-329 117553 Uba3 uuuuuccaaucgaccCACACAa |||||| auugugacuguccauGUGUGUa 2 8 517 538 [rn4:4:131902677-131902698:-] 0.5604 120 6 -9.32 -0.1119 MIMAT0000579 rno-miR-148b-3p 117553 Uba3 uguuUCAAGAC-ACUACGUGAcu | | || | |||||| uaucAUUGAUGCUUUUGCACUau 3 19 714 736 [rn4:4:131902479-131902501:-] 0.5604 121 0 -8.50 -0.1211 MIMAT0004650 rno-miR-340-5p 117553 Uba3 uuagucagAGUA-ACGAAAUAUu | || ||||||||| cauagaaaUAAUAUGCUUUAUAa 2 15 29 51 [rn4:4:131903164-131903186:-] 0.5507 153 7 -11.28 -1.0619 MIMAT0004650 rno-miR-340-5p 117553 Uba3 uuAGUCAGAGUAA--CGAAAUAUu | | |||: || ||||||| aaUGACUCUUUUUUAACUUUAUAa 2 21 184 207 [rn4:4:131903008-131903031:-] 0.5604 151 7 -8.29 -1.2677 MIMAT0000589 rno-miR-342-3p 117553 Uba3 ugcccacgcuAAAGACACACUCu |||:|||||||| aaacacugucUUUUUGUGUGAGu 2 14 327 349 [rn4:4:131902866-131902888:-] 0.5604 161 7 -17.61 -0.9581 MIMAT0000788 rno-miR-19b 117553 Uba3 agucaaAACGUACCUAAACGUGu ||| ||| ||||||| uuaucaUUG-AUGCUUUUGCACu 2 18 713 734 [rn4:4:131902481-131902502:-] 0.5604 155 7 -12.54 -1.0939 MIMAT0000789 rno-miR-19a 117553 Uba3 agUCAAAACGUAUCU----AAACGUGu |||| | ||| || ||||||| acAGUUAU-CAUUGAUGCUUUUGCACu 2 22 709 734 [rn4:4:131902481-131902506:-] 0.5604 154 7 -16.26 -1.0939 MIMAT0000836 rno-miR-130a 117553 Uba3 uacGGGAAAAUUGUAACGUGAc | :| |: : ||||||| uauCAUUGAUGCUUUUGCACUa 2 20 714 735 [rn4:4:131902480-131902501:-] 0.5604 143 7 -11.40 -1.2401 MIMAT0000837 rno-miR-130b 117553 Uba3 uacgGGAAAGUA--GUAACGUGAc :| || || : ||||||| guuaUCAUUGAUGCUUUUGCACUa 2 19 712 735 [rn4:4:131902480-131902503:-] 0.5604 145 7 -11.40 -1.2401 MIMAT0000854 rno-miR-152 117553 Uba3 gguUCAAGAC-AGUACGUGAcu | | || |: |||||| aucAUUGAUGCUUUUGCACUau 3 19 715 736 [rn4:4:131902479-131902500:-] 0.5604 125 0 -8.86 -0.1211 MIMAT0000857 rno-miR-181c 117553 Uba3 ugaguggcuguccAACUUACaa ||||||| uagaaauguauucUUGAAUGga 3 10 403 424 [rn4:4:131902791-131902812:-] 0.5604 125 0 -7.04 -0.1103 MIMAT0000857 rno-miR-181c 117553 Uba3 ugaguggcuguccaACUUACaa |||||| auauauauaaaaaaUGAAUGac 3 9 168 189 [rn4:4:131903026-131903047:-] 0.5604 120 0 -5.70 -0.1912 MIMAT0000858 rno-miR-181a 117553 Uba3 ugaguggcUGUCGCAACUUACaa ::| : ||||||| auagaaauGUAUUCUUGAAUGga 3 16 402 424 [rn4:4:131902791-131902813:-] 0.5604 127 0 -7.52 -0.1103 MIMAT0000858 rno-miR-181a 117553 Uba3 ugaguggcugucgcaACUUACaa |||||| cauauauauaaaaaaUGAAUGac 3 9 167 189 [rn4:4:131903026-131903048:-] 0.5604 120 0 -7.26 -0.1894 MIMAT0000859 rno-miR-181b 117553 Uba3 uggguggcugucgUUACUUACaa |||||||| cauauauauaaaaAAUGAAUGac 3 11 167 189 [rn4:4:131903026-131903048:-] 0.5604 130 0 -9.08 -0.1894 MIMAT0000859 rno-miR-181b 117553 Uba3 uggguggcugucguuACUUACaa |||||| auagaaauguauucuUGAAUGga 3 9 402 424 [rn4:4:131902791-131902813:-] 0.5604 120 0 -8.70 -0.1103 MIMAT0000865 rno-miR-190 117553 Uba3 uggauuAUAUAGUUUGUAUAgu ||||| | |||||| acuuuuUAUAU-AUACAUAUau 3 17 153 173 [rn4:4:131903042-131903062:-] 0.5604 138 0 -11.67 -0.1776 MIMAT0000867 rno-miR-192 117553 Uba3 ccgACAGUUAAGU-AU-CCAGUc ||| |:||:: || ||||| uugUGUGAGUUUGUUAUGGUCAa 2 19 340 362 [rn4:4:131902853-131902875:-] 0.5604 125 0 -13.08 -1.1371 MIMAT0000867 rno-miR-192 117553 Uba3 ccgacaGUUA-AGUAUC-CAGUc ||:| |:|||| |||| uguaaaCAGUAUUAUAGAGUCAu 2 16 575 597 [rn4:4:131902618-131902640:-] 0.5604 122 0 -12.60 -0.9056 MIMAT0000873 rno-miR-200c 117553 Uba3 ggUAGUAAUGGGCCGUCAUAAu || ||| : ||||||| ugAUAAUUUGUAAACAGUAUUa 2 21 567 588 [rn4:4:131902627-131902648:-] 0.5604 148 7 -10.88 -1.2192 MIMAT0000875 rno-miR-200b 117553 Uba3 cagUAGUAAUGGUCCGUCAUAAu || ||| :| ||||||| augAUAAUUUGUAAACAGUAUUa 2 21 566 588 [rn4:4:131902627-131902649:-] 0.5604 156 7 -9.58 -1.2192 MIMAT0000880 rno-miR-208 117553 Uba3 uguucgaaaaacgaGCAGAAUa :|||||| gaaaugaggaauuaUGUCUUAa 2 9 423 444 [rn4:4:131902771-131902792:-] 0.5604 124 6 -9.85 -0.1672 MIMAT0000883 rno-miR-212 117553 Uba3 accggcacUGACCUCUGACAau | | | |||||| acucauauAAUUGUGACUGUcc 3 15 508 529 [rn4:4:131902686-131902707:-] 0.5604 126 0 -12.21 -0.1017 MIMAT0001538 rno-miR-429 117553 Uba3 ugccgUAAUGGUCUGUCAUAAu ||| :| |||||||| ugauaAUUUGUAAACAGUAUUa 2 18 567 588 [rn4:4:131902627-131902648:-] 0.5604 157 7 -11.94 -1.2192 MIMAT0001626 rno-miR-431 117553 Uba3 acguacugccggacGUUCUGu |||||| gcacaaauuuaaacCAAGACa 2 8 661 681 [rn4:4:131902534-131902554:-] 0.5604 120 6 -9.62 -0.1471 MIMAT0003118 rno-miR-215 117553 Uba3 cagacaGUU-UAGUAUC-CAGUa ||: ||:|||| |||| uguaaaCAGUAUUAUAGAGUCAu 2 16 575 597 [rn4:4:131902618-131902640:-] 0.5604 122 0 -14.77 -0.9023 MIMAT0003119 rno-miR-224 117553 Uba3 auuugccuuggugaucACUGAAc |||||| uaguguggcuagaauuUGACUUu 2 8 135 157 [rn4:4:131903058-131903080:-] 0.5556 120 6 -9.91 -0.1273 MIMAT0003123 rno-miR-377 117553 Uba3 ggUUUUCA-ACGGAAACACACUa || | | | ::||||||||| caAACACUGUCUUUUUGUGUGAg 2 21 326 348 [rn4:4:131902867-131902889:-] 0.5604 159 7 -16.08 -0.8758 MIMAT0003123 rno-miR-377 117553 Uba3 gguuuucaACGGAAACACACua ||:| |||||| auugugacUGUCCAUGUGUGua 3 15 517 538 [rn4:4:131902677-131902698:-] 0.5604 130 0 -12.05 -0.1019 MIMAT0003192 rno-miR-379 117553 Uba3 ggaugcaAGGUAUCAGAUGGu | ||| ||||||: aaaauugUACAUUGUCUACUu 2 15 745 765 [rn4:4:131902450-131902470:-] 0.5604 138 0 -12.96 -0.1475 MIMAT0003193 rno-miR-494 117553 Uba3 uccaaagggcacaUACAAAGu ||||||| uucaaagaaauuaAUGUUUCa 2 9 688 708 [rn4:4:131902507-131902527:-] 0.5604 140 7 -8.89 -1.1819 MIMAT0003208 rno-miR-374 117553 Uba3 gugAAUCGUCCAACAUAAUAUa || |:| |||||||| uaaUUUGUAAACAGUAUUAUAg 2 20 570 591 [rn4:4:131902624-131902645:-] 0.5604 151 7 -7.89 -0.5193 MIMAT0003208 rno-miR-374 117553 Uba3 guGAAUCGUCCAACAUAA-UAUa :|| ||| | |||| ||| gcUUUUGCACUAUUUAUUAAUAa 2 21 724 746 [rn4:4:131902469-131902491:-] 0.5604 120 0 -3.98 -1.2670 MIMAT0003381 rno-miR-499 117553 Uba3 uuuguagugacguuCAGAAUu |||||| aaaugaggaauuauGUCUUAa 2 8 424 444 [rn4:4:131902771-131902791:-] 0.5604 120 6 -7.75 -0.1641 MIMAT0005299 rno-miR-181d 117553 Uba3 uggguggcugUUGUUACUUACaa || |||||||| cauauauauaAAAAAUGAAUGac 3 14 167 189 [rn4:4:131903026-131903048:-] 0.5604 137 0 -9.50 -0.1876 MIMAT0005299 rno-miR-181d 117553 Uba3 uggguggcuguuguuACUUACaa |||||| auagaaauguauucuUGAAUGga 3 9 402 424 [rn4:4:131902791-131902813:-] 0.5604 120 0 -9.31 -0.1103 MIMAT0005302 rno-miR-190b 117553 Uba3 uuGGAUUAUAGUUUGUAUAgu ::| |||| | |||||| cuUUUUAUAU-AUACAUAUau 3 20 154 173 [rn4:4:131903042-131903061:-] 0.5604 137 0 -6.99 -0.1810 MIMAT0005304 rno-miR-301b 117553 Uba3 cgaaacuGUUAUGGUAACGUGAc ::||:|: ||||||| uuaucauUGAUGCUUUUGCACUa 2 17 713 735 [rn4:4:131902480-131902502:-] 0.5604 156 7 -12.66 -1.2426 MIMAT0005307 rno-miR-375 117553 Uba3 agugcgcucggcuUGCUUGUUu |:|||||| uccaggaaagauuAUGAACAAa 2 10 281 302 [rn4:4:131902913-131902934:-] 0.5604 129 6 -14.30 -0.1113 MIMAT0005311 rno-miR-410 117553 Uba3 uguccgguagacacAAUAUAa |||||| uagaauuugacuuuUUAUAUa 2 8 144 164 [rn4:4:131903051-131903071:-] 0.5556 120 6 -4.45 -0.1691 MIMAT0005312 rno-miR-411 117553 Uba3 gcaugcgAUAUGCCAGAUGAu || |: ||||||| aaaauugUACAUUGUCUACUu 2 15 745 765 [rn4:4:131902450-131902470:-] 0.5604 150 7 -14.29 -1.2026 MIMAT0005316 rno-miR-455 117553 Uba3 gcuacaucagguuucCGUGUAu |||||| --ggaaaauaaaucuGCACAUa 2 8 1 20 [rn4:4:131903195-131903214:-] 0.4920 120 6 -8.69 -0.2309 MIMAT0005320 rno-miR-495 117553 Uba3 uucuucACGUGGUACAAACAAa ||::: | ||||||| ucuuuuUGUGUGA-GUUUGUUa 2 17 335 355 [rn4:4:131902860-131902880:-] 0.5604 146 7 -7.65 -1.0151

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G021741 Uba3 Rattus norvegicus 117553

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Uba3; Ube1c rno-let-7d 290 316 -UGAUACG---UUGGAUGAUGGAGA- |:|||| ||: | ||:|:||| GAUUAUGAACAAAUGUCCUGCUUCUU Uba3; Ube1c rno-let-7e 290 315 -UGAUAUG---UUGGAGGAUGGAGU |:|||: ||: ||||:|:|| GAUUAUGAACAAAUGUCCUGCUUCU Uba3; Ube1c rno-miR-106b 234 255 UAGACGUGA-CAGUCGUGAAAU :|| :|| || ||||:||| -GUUGGGCUAGUAAGCAUUUUC Uba3; Ube1c rno-miR-130b 700 736 -UACGGGAA----AGUAGUA---------ACGUGAC |||::: |:||||| |||||| AAUGUUUCAACAGUUAUCAUUGAUGCUUUUGCACUA Uba3; Ube1c rno-miR-132 677 707 GCUGGUACCGACA----UCUG-----ACAAU || ||||||||| ||| |||| AGA-CAUGGCUGUUCAAAGAAAUUAAUGUUU Uba3; Ube1c rno-miR-133a 68 103 UGUCGACCA----ACU-----UCCCCU----GGUU- ||| || ||| |||||| |||| -GAGCCGGGAAGAUGAGGCAGAGGGGAACACCCAAG Uba3; Ube1c rno-miR-133b 68 103 AUCGACCA----ACU-----UCCCCU----GGUU- ||| || ||| |||||| |||| GAGCCGGGAAGAUGAGGCAGAGGGGAACACCCAAG Uba3; Ube1c rno-miR-141 121 142 -GGUAGAAAUGGUCUGUCACAAU :|||:|||| || :||||| GUCAUUUUUAGCAU-UAGUGUG- Uba3; Ube1c rno-miR-142-3p 311 336 -AGGUAUUUCAUCCU--UUGUGAUGU ||: ||||| |||| ||||||: UUCUUUAAAGCAGGACAAACACUGU- Uba3; Ube1c rno-miR-181b 392 424 -GGGUGG------CUGU-CGUU---ACUUACAA :||||| || |:| |||||| AUCCACCUGUAUAGAAAUGUAUUCUUGAAUGG- Uba3; Ube1c rno-miR-184 507 532 -UGGGAAUAGU--CAAGAGGCAGGU- ||:| ||| || |:||||| UACUCAUAUAAUUGUGA-CUGUCCAU Uba3; Ube1c rno-miR-187 656 686 GCCGACGU---------UGUGUUCUGUGCU- | |||| || |||||||:|: AGUAUGCACAAAUUUAAAC-CAAGACAUGGC Uba3; Ube1c rno-miR-190 462 495 -UGGAUUA--------UAUAGUUUGUAUA-GU- ||||:| |||||||||||| || AACCUGACAUCUAGAGAUAUCAAACAUAGGCAA Uba3; Ube1c rno-miR-193 229 246 -GACCCUGAAACAUCCGGUCAA ||||| |:|||:||| UCUGGGU-----UGGGCUAGUA Uba3; Ube1c rno-miR-19a 709 735 AGUCAAAACGUAUCUA----AACGUGU ||||| ||| ||| |||||| ACAGUUAU-CAUUGAUGCUUUUGCACU Uba3; Ube1c rno-miR-19b 709 735 AGUCAA----AACGUACCUAAACGUGU ||||| ||| ||| ||||||| ACAGUUAUCAUUG-AUGCUUUUGCACU Uba3; Ube1c rno-miR-200c 563 590 -GGUAGUAAUGGGCC---GUCAUAAU- |||| || |: | |||||||| UCCAUGAUAAUUUGUAAACAGUAUUAU Uba3; Ube1c rno-miR-204 66 95 -UC-CGUAUC--CUAC--UGUUUCCCUU- || || :| |||| :||:||||:| AAGAGCCGGGAAGAUGAGGCAGAGGGGAA Uba3; Ube1c rno-miR-207 66 87 UUCCCUCCUCUCGGUCCU----CUUCG- ||||||:||| ||:|| -------AAGAGCCGGGAAGAUGAGGCA Uba3; Ube1c rno-miR-211 72 95 -UCCGUUUCCUACUGUUUCCCUU- :|| |:| || |:||:||||:| CGGGAAGAUGA-GGCAGAGGGGAA Uba3; Ube1c rno-miR-215 572 599 CAGACA---GUU-UAGUAUC-CAGUA- |:||| ||: ||:|||| ||||| AUUUGUAAACAGUAUUAUAGAGUCAUA Uba3; Ube1c rno-miR-22* 42 73 UUUCGA------------ACGGUGACUUCUUGA ||| ||| |:||||||:| --UGCUUUAUAAAUGUUAUGCAAUUGAAGAGCC Uba3; Ube1c rno-miR-221 126 146 CUUUGGGUCGUCUGUUACAUCGA- :::|||| :|:|||:||| ---UUUUAGCAU-UAGUGUGGCUA Uba3; Ube1c rno-miR-24 221 244 -GACAAGGACGACUUGACUCGGU- ||| |:| ||| :||:||:| ACUGAACUU-CUGGGUUGGGCUAG Uba3; Ube1c rno-miR-27b 319 337 -CGUCUUGAAUCGGUGACACUU ||||:|| |||||| AGCAGGACAAA--CACUGUC-- Uba3; Ube1c rno-miR-296 71 101 UGUCCUA--ACUCC----CCCCC---GGGA |:||| ||||| |||| ||| CCGGGAAGAUGAGGCAGAGGGGAACACCCA Uba3; Ube1c rno-miR-301 700 736 -UACGAAACUGU----------UAUGAUAACGUGAC |||:|| ||| ||:|| ||||||| AAUGUUUCAACAGUUAUCAUUGAUGCUUUUGCACUA Uba3; Ube1c rno-miR-324-3p 70 92 -GGUCG-UCGUGGACCCCGUCACC- ||:| || || ||||| || GCCGGGAAGA---UGAGGCAGAGGG Uba3; Ube1c rno-miR-327 274 288 UGGGAGUACGGGGAGUUCC ||||||:| ||:| ----CCAUGCCUC-CAGGA Uba3; Ube1c rno-miR-338 705 728 -AGUUGUUU-UAGUGACUACGACCU ||||||: ||||:||||||| UUCAACAGUUAUCAUUGAUGCUU-- Uba3; Ube1c rno-miR-342 319 350 CUGCCC--------ACGCUAAAGACACACUCU :| || ||: |||:|||||||| AGCAGGACAAACACUGUC-UUUUUGUGUGAGU Uba3; Ube1c rno-miR-343 72 95 AGACCCG-----UGUGCCUCCCUCU- ||| | :| ||||| || --CGGGAAGAUGAGGCAGAGGG-GAA Uba3; Ube1c rno-miR-346 66 92 -UCUCCGUCCGUG-AGUCCGUCUGU- |||| |:|| | ||||||| : AAGAGCCGGGAAGAUGAGGCAGAGGG Uba3; Ube1c rno-miR-34b 318 339 GUUAGUCGAUUAA--UGUGACGGAU ||| ||||||:|| ----AAGCAGGACAAACACUGUCUU Uba3; Ube1c rno-miR-34c 318 339 CGUUAGUCGA-UUGA-UGUGACGGA- ||| :|| ||||||:|| -----AAGCAGGACAAACACUGUCUU Uba3; Ube1c rno-miR-352 484 513 AUGAUA-CGUUG-------GAUGAUGAGA || ||||: :|||||||| AACAUAGGCAAUUUCUUCAUUACUACUCA Uba3; Ube1c rno-miR-363-3p 587 608 -UGUCUACCUAUGG-CACGUUAA |:||| ||||| ||||| UAUAGAGUCAUACCUGUGCAU-- Uba3; Ube1c rno-miR-363-5p 379 402 UUUAACGUAGCACU---AGGUGGGC- ||||||: ||| ||||||:| --CUUGCAUU-UGAGCAUCCACCUGU Uba3; Ube1c rno-miR-370 296 326 -UUGGUCCAAGGUGGGG------UCGUCCG ||| ||| |:: |||||| GAACAAAUGUCCUGCUUCUUUAAAGCAGGA Uba3; Ube1c rno-miR-377 325 349 GGUUUUCAACGGAA--ACACACUA |||| ||:||| ||||||| ACAAACACUGUCUUUUUGUGUGAG Uba3; Ube1c rno-miR-424 673 691 AGGUUUUGUACUUAACGACGAC ||||:||||| ||||:| ACCAAGACAUG----GCUGUUC Uba3; Ube1c rno-miR-448 474 496 UACCCUGUAGGAUGUAUACGUU- | ||:||| ||||| |||| -AGAGAUAUCAAACAUAGGCAAU Uba3; Ube1c rno-miR-449 305 338 UGGUCGA------------UUGUUAUGUGACGGU || ||| :|||| ||||||:| UCCUGCUUCUUUAAAGCAGGACAA-ACACUGUCU Uba3; Ube1c rno-miR-501 68 93 AAAGUGGGUCC-------CUGUUUCCUAA | ||:|| |:||:|||: ---GAGCCGGGAAGAUGAGGCAGAGGGG- Uba3; Ube1c rno-miR-539 467 503 UGUGUGGUUC-CUAU-------------UAAAGAGG- |||:| || |||| ||||||:| -GACAUCUAGAGAUAUCAAACAUAGGCAAUUUCUUCA Uba3; Ube1c rno-let-7d 291 314 UGAUAC--G-UUGGAUGAUGGAGA |:|||| | ||: | ||:|:||| ATTATGAACAAATGTCCTGCTTCT Uba3; Ube1c rno-let-7e 291 314 UGAUA--UG-UUGGAGGAUGGAGu |:||| || ||: ||||:|:|| ATTATGAACAAATGTCCTGCTTCt Uba3; Ube1c rno-miR-106b 233 254 uagACGUGA-CAGUCGUGAAAu || :|| || ||||:||| ggtTGGGCTAGTAAGCATTTTc Uba3; Ube1c rno-miR-132 671 690 gcUGGUACCGACAUCUGACAAu |||| | | | |:||||| aaACCAAGAC-AT-GGCTGTTc Uba3; Ube1c rno-miR-133a 67 97 UGUCGAC----CAACU-----UCCCCUGGUu | ||| | | ||| |||||| || AGAGCCGGGAAGATGAGGCAGAGGGGAACAc Uba3; Ube1c rno-miR-133b 76 97 aUCGAC-CAACUUCCCCUGGUu || || | :|||||| || aAGATGAGGCAGAGGGGAACAc Uba3; Ube1c rno-miR-141 122 142 gGUAGAAAUGGUCUGUCACAau |||:|||| || :||||| tCATTTTTAGCA-TTAGTGTgg Uba3; Ube1c rno-miR-142-3p 312 336 AGGUAUUUCAUCC--UUUGUGAugu ||: ||||| ||| ||||||| TCTTTAAAGCAGGACAAACACTgtc Uba3; Ube1c rno-miR-150 220 242 gUGACCAUG--UUCCCAACCCucu ||| | || |||||||| gACT-GAACTTCTGGGTTGGGcta Uba3; Ube1c rno-miR-181b 393 424 gGGUGG-C-UGUCGUU--------ACUUACaa ||||| | |:|| || |||||| tCCACCTGTATAGAAATGTATTCTTGAATGga Uba3; Ube1c rno-miR-184 508 530 UGGGAAUAGUCA-AGAGGCAGGU ||:| ||| | | | |:||||| ACTCATATAATTGTGACTGTCCA Uba3; Ube1c rno-miR-187 665 684 gccgacgUUGUGUUCUGUGCu ||| |||||||:| aaatttaAAC-CAAGACATGg Uba3; Ube1c rno-miR-190 470 492 UGGAU-UAUAUAGUUUGUAUagu |:||| | |||||||||||| ATCTAGAGATATCAAACATAggc Uba3; Ube1c rno-miR-193 230 245 GACCCUGAAACAUCCGGUCAa ||||| ||| |||:||| CTGGG---TTG--GGCTAGTa Uba3; Ube1c rno-miR-19a 709 734 aGUCAAAACGUAUCU----AAACGUGu ||||| | ||| || ||||||| aCAGTTAT-CATTGATGCTTTTGCACt Uba3; Ube1c rno-miR-19b 709 734 aGUCAA----AACGUACCUAAACGUGu ||||| ||| ||| ||||||| aCAGTTATCATTG-ATGCTTTTGCACt Uba3; Ube1c rno-miR-200c 564 588 GGUAGUAAUGGGC---CGUCAUAAU |||| || |:::| |||||||| CCATGATAATTTGTAAACAGTATTA Uba3; Ube1c rno-miR-204 73 93 uCCGUAUCCUACUGUUUCCCUU || | | || |:||:||||:| gGGAAGATGA-GGCAGAGGGGA Uba3; Ube1c rno-miR-207 71 96 uuCCCUCCU-CUCGG--UCCUCUUcg |||| || ||| | |||:||| ccGGGAAGATGAGGCAGAGGGGAAca Uba3; Ube1c rno-miR-211 73 93 uCCGUUUCCUACUGUUUCCCUU || |:| || |:||:||||:| gGGAAGATGA-GGCAGAGGGGA Uba3; Ube1c rno-miR-22* 51 72 UUUCGA-ACGGUGACUUCUUGa || |:| ||| |:||||||:| AATGTTATGCAATTGAAGAGCc Uba3; Ube1c rno-miR-221 123 144 cuuugggUCGUCUGUUACAUCGA |||| :|:|||:||| catttttAGCA-TTAGTGTGGCT Uba3; Ube1c rno-miR-24 206 229 gaCAAGGACGACU--UGACUCGgu |||:|| :||| ||||| | aaGTTTCTCTTGAAGACTGAACtt Uba3; Ube1c rno-miR-27b 320 338 CGUCUUGAAUCGGUGACAcuu ||||:|| | |||||| GCAGGAC--AAACACTGTctt Uba3; Ube1c rno-miR-324-3p 71 90 GGUCGUCGUGGACCCCGUCACC ||:| | | || ||||| || CCGG--GAAGATGAGGCAGAGG Uba3; Ube1c rno-miR-327 270 286 ugggaGUACGGGGAGUUCC |||| |||| ||| aaaacCATG--CCTCCAGG Uba3; Ube1c rno-miR-338 706 729 AGUUGUU-UUAGUGACUACGAccu ||||||: ||||:||||||| TCAACAGTTATCATTGATGCTttt Uba3; Ube1c rno-miR-342 326 349 cugcccacgcuAAAGACACACUCu |||:|||||||| caaacactgtcTTTTTGTGTGAGt Uba3; Ube1c rno-miR-343 70 88 aGACCCGUGUGCCUCCCUCU | ||| | |: |||| ||| gCCGGGAAGAT-GAGGCAGA Uba3; Ube1c rno-miR-346 67 90 UCUCCGUCCGU-GAGUCCGUCUgu |||| |:|| | | ||||||| AGAGCCGGGAAGATGAGGCAGAgg Uba3; Ube1c rno-miR-347 72 96 aCCC----GCUGGGUCUCCC--UGU ||| :|| ||||||| ||| cGGGAAGATGAGGCAGAGGGGAACA Uba3; Ube1c rno-miR-34b 317 338 gUUAGUC--GAUUAAUGUGACGGAu || ||| | || ||||||:|| aAAGCAGGAC-AA--ACACTGTCTt Uba3; Ube1c rno-miR-34c 316 337 cgUUAGUCGAUUG-AUGUGACGGA || ||| :|| ||||||:|| taAAGCAG--GACAAACACTGTCT Uba3; Ube1c rno-miR-352 484 512 aUG-AUACGUU------G-GAUGAUGAGa || || |||| | :|||||||| aACATAGGCAATTTCTTCATTACTACTCa Uba3; Ube1c rno-miR-363-3p 588 609 UGUCUACCUAUGG-CACGUuaa |:||| ||||| ||||| ATAGAGTCATACCTGTGCAtga Uba3; Ube1c rno-miR-363-5p 377 400 UUUAACGU-AGCAC-UAGGUGGGC |: ||||| |:| | |||||||:| AGCTTGCATTTGAGCATCCACCTG Uba3; Ube1c rno-miR-370 304 325 uuGGUCCAAGGUGGGGUCGUCCg || | |||: :: |||||| gtCCTGCTTCT-TTAAAGCAGGa Uba3; Ube1c rno-miR-377 325 348 gGUUUUCAACGG--AAACACACUa |||| ||:| ||||||||| aCAAACACTGTCTTTTTGTGTGAg Uba3; Ube1c rno-miR-448 473 494 uaCCCUGUAGGAUGUAUACGUU | ||:||| ||||| |||| taGAGATATCAAACATAGGCAA Uba3; Ube1c rno-miR-449 319 337 UGGUCGAUUGUUAUGUGACGGu | ||| :|||| ||||||:| AGCAG--GACAA-ACACTGTCt Uba3; Ube1c rno-miR-501 92 110 aaaGUGGGUCCCUGUUUCCUaa |||||| | |||||| gaaCACCCAAG---AAAGGAaa Uba3; Ube1c rno-miR-539 481 501 uGUGUGGUUCCUAUUAAAGAGG || || ||| |||||||:| tCAAACATAGG-CAATTTCTTC Uba3; Ube1c rno-miR-130b 728 735 --------UACGGGAA----AGUAGU---------AACGUGAC |||::: |:|||| ||||||| AGAAAUUAAUGUUUCAACAGUUAUCAUUGAUGCUUUUGCACUA Uba3; Ube1c rno-miR-19a 727 734 A-----------------GUCAA----AACGUAUCUAAACGUGU ||||| ||| ||: ||||||| AAGAAAUUAAUGUUUCAACAGUUAUCAUUG-AUGCUUUUGCACU Uba3; Ube1c rno-miR-19b 727 734 A-----------------GUCAA----AACGUACCUAAACGUGU ||||| ||| ||| ||||||| AAGAAAUUAAUGUUUCAACAGUUAUCAUUG-AUGCUUUUGCACU Uba3; Ube1c rno-miR-200c 581 588 ------------------GGUAGUAAUGGGCC---GUCAUAAU |||| || |:::| |||||||| UUGCAGAGUUUAACUUGUCCAUGAUAAUUUGUAAACAGUAUUAU Uba3; Ube1c rno-miR-301 728 735 --------UACGAAACUGU----------UAUGAUAACGUGAC |||:|| ||| ||:|| ||||||| AGAAAUUAAUGUUUCAACAGUUAUCAUUGAUGCUUUUGCACUA Uba3; Ube1c rno-miR-342 342 349 -----------------CUGCCC---ACGCUAAAGACACACUCU ||| ||: |||:|||||||| CUGCUUCUUUAAAGCAGGACAAACACUGUC-UUUUUGUGUGAGU Uba3; Ube1c rno-miR-352 505 512 A--------------UG-AUACGUUG-------GAUGAUGAGA || || ||||: :|||||||| AUCUAGAGAUAUCAAACAUAGGCAAUUUCUUCAUUACUACUCA Uba3; Ube1c rno-miR-377 341 348 GGUUUUCAAC---------------------GGAAACACACUA ::||||||||| CCUGCUUCUUUAAAGCAGGACAAACACUGUCUUUUUGUGUGAG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Uba3 RAID00051292 rno-miR-19b-3p miRNA MIMAT0000788 Uba3 mRNA 117553 Prediction 0.2202 Uba3 RAID00167267 rno-miR-379-5p miRNA MIMAT0003192 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID00549125 rno-miR-148b-3p miRNA MIMAT0000579 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID00645213 rno-miR-410-3p miRNA MIMAT0005311 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID00723979 rno-miR-452-5p miRNA MIMAT0035748 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID00930848 rno-miR-153-5p miRNA MIMAT0017135 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID00932786 rno-miR-181a-5p miRNA MIMAT0000858 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID00933351 rno-miR-155-5p miRNA MIMAT0030409 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID01044244 rno-miR-212-3p miRNA MIMAT0000883 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID01156614 rno-miR-181c-5p miRNA MIMAT0000857 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID01157600 rno-miR-495 miRNA MIMAT0005320 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID01302826 rno-miR-181b-5p miRNA MIMAT0000859 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID01376966 rno-miR-494-3p miRNA MIMAT0003193 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID01381507 rno-miR-455-5p miRNA MIMAT0005316 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID01823386 rno-miR-190a-5p miRNA MIMAT0000865 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID01865597 rno-miR-152-3p miRNA MIMAT0000854 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID01932979 rno-miR-130a-3p miRNA MIMAT0000836 Uba3 mRNA 117553 Prediction 0.2202 Uba3 RAID02044782 rno-miR-429 miRNA MIMAT0001538 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID02098937 rno-miR-301a-3p miRNA MIMAT0000552 Uba3 mRNA 117553 Prediction 0.2202 Uba3 RAID02106542 rno-miR-200c-3p miRNA MIMAT0000873 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID02150403 rno-miR-352 miRNA MIMAT0000610 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID02251926 rno-miR-200b-3p miRNA MIMAT0000875 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID02262628 rno-miR-215 miRNA MIMAT0003118 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID02275179 rno-miR-344i miRNA MIMAT0025049 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID02278136 rno-miR-130b-3p miRNA MIMAT0000837 Uba3 mRNA 117553 Prediction 0.2202 Uba3 RAID02399436 rno-miR-431 miRNA MIMAT0001626 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID02432838 rno-miR-340-5p miRNA MIMAT0004650 Uba3 mRNA 117553 Prediction 0.2202 Uba3 RAID02468681 rno-miR-743b-3p miRNA MIMAT0005280 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID02713819 rno-miR-3570 miRNA MIMAT0017850 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID02732688 rno-miR-19a-3p miRNA MIMAT0000789 Uba3 mRNA 117553 Prediction 0.2202 Uba3 RAID02806650 rno-miR-329-3p miRNA MIMAT0000566 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03007921 rno-miR-489-3p miRNA MIMAT0003113 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03028622 rno-miR-201-3p miRNA MIMAT0017364 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03068418 rno-miR-664-3p miRNA MIMAT0003382 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03099518 rno-miR-411-5p miRNA MIMAT0005312 Uba3 mRNA 117553 Prediction 0.2202 Uba3 RAID03253295 rno-miR-224-5p miRNA MIMAT0003119 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03312041 rno-miR-181d-5p miRNA MIMAT0005299 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03407720 rno-miR-192-5p miRNA MIMAT0000867 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03504925 rno-miR-190b-5p miRNA MIMAT0005302 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03565450 rno-miR-499-5p miRNA MIMAT0003381 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03586504 rno-miR-301b-3p miRNA MIMAT0005304 Uba3 mRNA 117553 Prediction 0.2202 Uba3 RAID03618600 rno-miR-377-3p miRNA MIMAT0003123 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03627257 rno-miR-466c-3p miRNA MIMAT0017287 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03719988 rno-miR-375-3p miRNA MIMAT0005307 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03929843 rno-miR-374-5p miRNA MIMAT0003208 Uba3 mRNA 117553 Prediction 0.1828 Uba3 RAID03941145 rno-miR-342-3p miRNA MIMAT0000589 Uba3 mRNA 117553 Prediction 0.2202 Uba3 RAID03971344 rno-miR-208a-3p miRNA MIMAT0000880 Uba3 mRNA 117553 Prediction 0.1828