DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000550 rno-miR-323 297498 Crbn ucuccagCUGGCACAUU-ACAc |:| |||||| ||| gaggcaaGGCAGUGUAAUUGUa 2 15 337 358 [rn4:4:142136483-142136504:-] 0.5344 122 0 -16.72 -0.7827 MIMAT0000554 rno-miR-324-3p 297498 Crbn ggUC-GUCGUGGACCCCGUCACc || ||| : | ||||||| caAGACAGAGGC-AAGGCAGUGu 2 21 330 351 [rn4:4:142136490-142136511:-] 0.5344 141 7 -20.87 -0.7808 MIMAT0000561 rno-miR-327 297498 Crbn ugggagUACGGGGAGUUCc |||: |||||| aauaaaAUGUAACUCAAGa 2 14 731 749 [rn4:4:142136092-142136110:-] 0.5102 121 6 -12.21 -0.1360 MIMAT0004654 rno-miR-344-5p 297498 Crbn ggaccuUAGAUCGG-UCCUCGGACu ||:|| :: | ||||||| ugcacuAUUUAUUUGAUGAGCCUGu 2 19 481 505 [rn4:4:142136336-142136360:-] 0.4775 153 7 -17.86 -0.8220 MIMAT0000592 rno-miR-344-3p 297498 Crbn ugcCAGUCCGAAACCGAUCUAGu | | | | | |||||||| ugaGCCUGUCAUGUGCUAGAUCc 2 21 497 519 [rn4:4:142136322-142136344:-] 0.4919 152 7 -15.08 -0.2932 MIMAT0004711 rno-miR-21* 297498 Crbn cugucggguagcuGACGACAAc :||||||| gauucagaaguacUUGCUGUUa 2 10 161 182 [rn4:4:142136659-142136680:-] 0.5593 141 7 -13.48 -0.6722 MIMAT0004718 rno-miR-29a* 297498 Crbn gaCU-UGUGGUUUUCUUUAGUCa || |:||: ||||||| cuGACAUACUUUCUCAAAUCAGa 2 21 23 45 [rn4:4:142136796-142136818:-] 0.4709 143 7 -14.48 -0.5178 MIMAT0000813 rno-miR-34b 297498 Crbn guUAGUC-GAUUAAU-GUGACGGAu ||| | | |: | |||||||| agAUCUGCCCAGACAUCACUGCCUc 2 22 43 67 [rn4:4:142136774-142136798:-] 0.4709 151 7 -18.05 -0.1920 MIMAT0000893 rno-miR-290 297498 Crbn uuuuucacggggguaUCAAACUc ||||||| aagaguaaaauaagcAGUUUGAg 2 9 429 451 [rn4:4:142136390-142136412:-] 0.5274 140 7 -13.71 -0.5455 MIMAT0003113 rno-miR-489 297498 Crbn cgACGGUAUAUACACUACAGUAa ||::: |||| ||||||| ccUGUUGGAUAU---AUGUCAUu 2 22 205 224 [rn4:4:142136617-142136636:-] 0.5370 153 7 -15.62 -0.7585 MIMAT0003113 rno-miR-489 297498 Crbn cgacgguauauacacUACAGUAa ||||||| auaggcuucuccucaAUGUCAUu 2 9 750 772 [rn4:4:142136069-142136091:-] 0.5102 140 7 -10.58 -1.0154 MIMAT0003113 rno-miR-489 297498 Crbn cgACGGUAUAUACAC----UACAGUaa | |:|| || ||| |||||| uaUUCUAUUUAGGUGAAUUAUGUCAaa 3 22 668 694 [rn4:4:142136147-142136173:-] 0.5063 136 0 -11.25 -0.1015 MIMAT0003121 rno-miR-483 297498 Crbn uguucugcccuccCCUCCUCACu | ||||||| -----gugcaccuGUAGGAGUGa 2 11 1 18 [rn4:4:142136823-142136840:-] 0.4709 142 7 -13.25 -0.7514 MIMAT0003121 rno-miR-483 297498 Crbn ugUUCUGCCCUCCCCUCC-UCACu ||||| |||| ||| |||| acAAGAC-AGAGGCAAGGCAGUGu 2 22 329 351 [rn4:4:142136490-142136512:-] 0.5344 131 0 -25.68 -0.7205 MIMAT0003175 rno-miR-543* 297498 Crbn ucuucacguggcGCUUACAAa :||||||| ugcucuaaaugaUGAAUGUUc 2 10 288 308 [rn4:4:142136533-142136553:-] 0.5056 141 7 -10.02 -0.4625 MIMAT0003195 rno-miR-376b-5p 297498 Crbn auugguaucuuccuUAUAGGUg ||||||| ggccaacacuaccuAUAUCCAa 2 9 643 664 [rn4:4:142136177-142136198:-] 0.5063 140 7 -11.58 -1.1427 MIMAT0003378 rno-miR-378* 297498 Crbn uguguccuggaccucAGUCCUc |||||| cuaggauuauaccauUCAGGAa 2 8 580 601 [rn4:4:142136240-142136261:-] 0.5063 120 6 -13.99 -0.1194 MIMAT0005279 rno-miR-466c 297498 Crbn guacauguacGUGUGUAGUGu || ||||||| cagaucugccCAGACAUCACu 2 12 42 62 [rn4:4:142136779-142136799:-] 0.4709 147 7 -12.35 -0.2327 MIMAT0005286 rno-miR-878 297498 Crbn agAUGGGUCAUAC-CACAGUACg ||:::: |: | ||||||| uuUAUUUGAUGAGCCUGUCAUGu 2 21 488 510 [rn4:4:142136331-142136353:-] 0.4919 147 7 -13.06 -0.1582 MIMAT0005319 rno-miR-484 297498 Crbn uagcccucccCUGACUCGGACu || |||||||| cuauuuauuuGA-UGAGCCUGu 2 13 485 505 [rn4:4:142136336-142136356:-] 0.4775 146 7 -15.20 -0.8292 MIMAT0012822 rno-miR-202 297498 Crbn uuucuucauauacgUAUCCUu |||||| gauauaugucauugAUAGGAa 2 8 212 232 [rn4:4:142136609-142136629:-] 0.5370 120 6 -12.27 -0.1209 MIMAT0012827 rno-miR-1224 297498 Crbn gagguggaggggucAGGAGUg |||||| caagaauaggcuucUCCUCAa 2 8 745 765 [rn4:4:142136076-142136096:-] 0.5102 120 6 -11.91 -0.1385 MIMAT0012831 rno-miR-544 297498 Crbn cucgaacgauuuuuaCGUCUUa |||||| aaauaagcaguuugaGCAGAAa 2 8 436 457 [rn4:4:142136384-142136405:-] 0.5274 120 6 -10.37 -0.1512 MIMAT0012839 rno-miR-668 297498 Crbn ccauCACCCGGCUCGGCUCACUGu ||| || : ||||||| ----GUGCACCUGUAGGAGUGACu 2 21 1 20 [rn4:4:142136821-142136840:-] 0.4709 148 7 -15.46 -0.5133 MIMAT0012845 rno-miR-935 297498 Crbn cgccaucgccUUCGCCAUUGAcc || |||||| guacaguaauAAAAUGUAACUca 3 14 724 746 [rn4:4:142136095-142136117:-] 0.5102 121 0 -4.45 -0.1434 MIMAT0012847 rno-miR-293 297498 Crbn guUUCACA----GUGUGUCAAACUCa ||| || :| :||||||||| uaAAGAGUAAAAUAAGCAGUUUGAGc 2 21 427 452 [rn4:4:142136389-142136414:-] 0.5274 155 7 -17.83 -0.9311 MIMAT0012848 rno-miR-294 297498 Crbn ucuaucccggaggUAAAACUc ||||||| uacugauuuguaaAUUUUGAa 2 9 401 421 [rn4:4:142136420-142136440:-] 0.5773 140 7 -5.26 -1.2945 MIMAT0012850 rno-miR-465 297498 Crbn gugUGGUCGUGGCAAGAUUUAu | || |:|:| ||||||| aaaAGCAUCGCUGCUCUAAAUg 2 20 277 298 [rn4:4:142136543-142136564:-] 0.5056 163 7 -17.71 -0.1864 MIMAT0012851 rno-miR-547 297498 Crbn gaGUGAAUUUCU-UCAUGGUu :|||| ||| ||||||| auUACUUUCAGAUAGUACCAu 2 19 880 900 [rn4:4:142135941-142135961:-] 0.5102 161 7 -18.74 -1.0157 MIMAT0012854 rno-miR-764 297498 Crbn uccUCCUGUACACUCGUgg || | :| |||||| auaAGCA-GUUUGAGCAga 3 17 438 455 [rn4:4:142136386-142136403:-] 0.5274 126 0 -8.70 -0.2391 MIMAT0012860 rno-miR-496 297498 Crbn cucUAACCGGUACA---UUAUGAGu | | :|| || ||||||: caaAGUAAUCAGGUAAAAAUACUUa 2 20 691 715 [rn4:4:142136126-142136150:-] 0.5063 126 0 -9.45 -0.1046 MIMAT0000552 rno-miR-301a 297498 Crbn cgaaacuGUUAUGAUAACGUGAc |::|:: ||||||| uagcauuCGGUGUAUUUGCACUa 2 17 465 487 [rn4:4:142136354-142136376:-] 0.4775 148 7 -12.59 -1.0862 MIMAT0000581 rno-miR-338 297498 Crbn agUUGUUUUAGUGACUACGACCu :| :|:||| | ||||||| cuGAGGAGAUC-CACAUGCUGGu 2 22 854 875 [rn4:4:142135966-142135987:-] 0.5102 155 7 -16.52 -0.2073 MIMAT0000788 rno-miR-19b 297498 Crbn agUCAAAACGUACCUAAACGUGu || || :|| |||||||| auAGCAUUCGGUGUAUUUGCACu 2 22 464 486 [rn4:4:142136355-142136377:-] 0.4775 161 7 -13.37 -0.8599 MIMAT0000789 rno-miR-19a 297498 Crbn agUCAAAACGUAUCUAAACGUGu || || :|: |||||||| auAGCAUUCGGUGUAUUUGCACu 2 22 464 486 [rn4:4:142136355-142136377:-] 0.4775 157 7 -12.28 -0.8599 MIMAT0000790 rno-miR-21 297498 Crbn agUUGUAG----UCAGACUAUUCGau ||:||: ||| |||||| aaAAUAUUAAAGAGUAAAAUAAGCag 3 21 420 445 [rn4:4:142136396-142136421:-] 0.5773 127 0 -8.45 -0.1399 MIMAT0000814 rno-miR-34c 297498 Crbn cgUUAGUC--GAUUGAUGUGACGGa :||| | | :|| ||||||| caGAUCUGCCCAGACAUCACUGCCu 2 22 42 66 [rn4:4:142136775-142136799:-] 0.4709 152 7 -20.09 -0.5593 MIMAT0000815 rno-miR-34a 297498 Crbn ugUUGGUCGAUUCU---GUGACGGu :|:| || ||| ||||||| caGAUCUGCCCAGACAUCACUGCCu 2 21 42 66 [rn4:4:142136775-142136799:-] 0.4709 151 7 -19.30 -0.5557 MIMAT0000836 rno-miR-130a 297498 Crbn uacgggaaaauuguAACGUGAc ||||||| agcauucgguguauUUGCACUa 2 9 466 487 [rn4:4:142136354-142136375:-] 0.4775 140 7 -10.09 -1.0838 MIMAT0000837 rno-miR-130b 297498 Crbn uacggGAAAG-UA-GU-AACGUGAc | ||| :| :| ||||||| aauagCAUUCGGUGUAUUUGCACUa 2 18 463 487 [rn4:4:142136354-142136378:-] 0.4775 142 7 -13.42 -1.0862 MIMAT0000845 rno-miR-139-5p 297498 Crbn gaccucugugCACGU-GACAUCu ||||| |||||| ----------GUGCACCUGUAGg 2 13 1 13 [rn4:4:142136828-142136840:-] 0.4709 124 6 -16.66 -0.3640 MIMAT0000848 rno-miR-142-3p 297498 Crbn aggUAUUU-CAUCCUUUGUGAUGu ||||| |:| |||||||| uaaAUAAACCUGGCCAACACUACc 2 21 632 655 [rn4:4:142136186-142136209:-] 0.5063 163 7 -13.49 -0.6669 MIMAT0000857 rno-miR-181c 297498 Crbn ugaguGGCUGUCCAACUUACAa :| | | | ||||||| gcugcUCUAAAUGAUGAAUGUu 2 18 286 307 [rn4:4:142136534-142136555:-] 0.5056 149 7 -12.80 -0.4805 MIMAT0000858 rno-miR-181a 297498 Crbn ugAGUGGCUG---UCGCAACUUACAa ||:|:| : | :| ||||||| caUCGCUGCUCUAAAUGAUGAAUGUu 2 22 282 307 [rn4:4:142136534-142136559:-] 0.5056 148 7 -16.74 -0.4805 MIMAT0000859 rno-miR-181b 297498 Crbn ugGGUGGCUGUCGUUACUUACAa |::|: | ::|||||||| cgCUGCUCUAAAUGAUGAAUGUu 2 22 285 307 [rn4:4:142136534-142136556:-] 0.5056 153 7 -15.57 -0.4805 MIMAT0000871 rno-miR-196a 297498 Crbn gggUUG-UUGUAC---UU-UGAUGGAu ||: ||| || || ||||||| uuaAAUAAACCUGGCCAACACUACCUa 2 20 631 657 [rn4:4:142136184-142136210:-] 0.5063 148 7 -17.96 -0.8500 MIMAT0000876 rno-miR-203 297498 Crbn gaucacCAGG--AUUUGUAAAGUg |||| | :||||||| guauauGUCCAAUUUGCAUUUCAu 2 17 527 550 [rn4:4:142136291-142136314:-] 0.5063 147 7 -13.81 -0.8313 MIMAT0000888 rno-miR-218 297498 Crbn uguACCAAUCUAGUUCGUGUu ||||| |:| ||||||| agcUGGUUUGGU-AAGCACAa 2 19 313 332 [rn4:4:142136509-142136528:-] 0.5344 164 7 -19.53 -0.5507 MIMAT0000896 rno-miR-292-5p 297498 Crbn guuuucucggggGUCAAACUCa ||||||||| gaguaaaauaagCAGUUUGAGc 2 11 431 452 [rn4:4:142136389-142136410:-] 0.5274 150 7 -14.52 -0.9311 MIMAT0001082 rno-miR-196b 297498 Crbn gggUUGUU--GUCC--UU-UGAUGGAu ||:|| | || || ||||||| uuaAAUAAACCUGGCCAACACUACCUa 2 20 631 657 [rn4:4:142136184-142136210:-] 0.5063 148 7 -17.96 -0.8500 MIMAT0001543 rno-miR-449a 297498 Crbn ugGUCGAUUGU-UAUGUGACGGu | || | | || ||||||| auCUGCCCAGACAU-CACUGCCu 2 21 45 66 [rn4:4:142136775-142136796:-] 0.4709 145 7 -19.89 -0.5281 MIMAT0001549 rno-miR-365 297498 Crbn uaUUCCUAAAAAUCCCCGUAAu ||| | | | ||||||| uaAAGCA-ACUGAAGGGCAUUa 2 21 609 629 [rn4:4:142136212-142136232:-] 0.5063 146 7 -12.34 -1.2348 MIMAT0003117 rno-miR-361 297498 Crbn cauggggaccucuaAGACUAUu ||||||| cagacaucacugccUCUGAUAu 2 9 52 73 [rn4:4:142136768-142136789:-] 0.4709 140 7 -11.17 -0.2820 MIMAT0003119 rno-miR-224 297498 Crbn auuugccuuggugaUCACUGAAc |||||||| -gugcaccuguaggAGUGACUUu 2 10 1 22 [rn4:4:142136819-142136840:-] 0.4709 145 7 -13.20 -0.3748 MIMAT0003213 rno-miR-503 297498 Crbn gacgucaugacaagGGCGACGAu :||||||| acaggaaaaaagcaUCGCUGCUc 2 10 270 292 [rn4:4:142136549-142136571:-] 0.5056 141 7 -17.92 -0.6155 MIMAT0005299 rno-miR-181d 297498 Crbn ugGGUGGCUGUUGUUACUUACAa |::|: ||::|||||||| cgCUGCUCUAAAUGAUGAAUGUu 2 22 285 307 [rn4:4:142136534-142136556:-] 0.5056 161 7 -16.53 -0.4805 MIMAT0005303 rno-miR-196c 297498 Crbn gggUUGUUGUGCUU-UGAUGGAu ||| :| || ||||||| auaAACCUGGCCAACACUACCUa 2 20 635 657 [rn4:4:142136184-142136206:-] 0.5063 150 7 -17.96 -0.8500 MIMAT0005304 rno-miR-301b 297498 Crbn cgaaacuGUUAUGGUAACGUGAc |::|:: ||||||| uagcauuCGGUGUAUUUGCACUa 2 17 465 487 [rn4:4:142136354-142136376:-] 0.4775 148 7 -12.60 -1.0862 MIMAT0005341 rno-miR-488 297498 Crbn cugguucuuugucGGAAAGUu ||||||| aaaggacuuugcuCCUUUCAa 2 9 359 379 [rn4:4:142136462-142136482:-] 0.5773 140 7 -13.33 -1.1867

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099273 Crbn Rattus norvegicus 297498

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Crbn rno-let-7b 50 69 UUGGUGUGUUGGAUGAUGGAGU ||| || |:| |||:|||| -CCCAGAC-AUC-ACUGCCUCU Crbn rno-let-7c 50 69 UUGGUAUGUUGGAUGAUGGAGU ||| || |:| |||:|||| -CCCAGAC-AUC-ACUGCCUCU Crbn rno-let-7d 47 70 UGAUACG---UUGGA-UGAUGGAGA- ||| :|| |||:||||| ---CUGCCCAGACAUCACUGCCUCUG Crbn rno-let-7f 24 69 -UUGAUAUG------------UUAGA-----------UGAUGGAGU :|| |||| :|||| |||:|||| UGAC-AUACUUUCUCAAAUCAGAUCUGCCCAGACAUCACUGCCUCU Crbn rno-miR-101b 383 407 -GAAGUCG-AUAGUGUC-AUGACAU |||:||| |:|| || ||||| UCUUUAGCUUGUCUAAGAUACUGA- Crbn rno-miR-103 828 847 -AGUAUCGGGACAUGUUACGACGA |:|| |||: ||| |||||| AUUAU-GCCU--UAC--UGCUGCA Crbn rno-miR-107 826 847 ACUAU--CGGGACAUGUUACGACGA ||| |||: ||| |||||| GGAUUAUGCCU--UAC--UGCUGCA Crbn rno-miR-133a 804 833 UGUCGAC--CA--ACU----UCCCCUGGUU ||||| || ||| :|||||::| -AAGCUGCAGUAAUGAAGUGGGGGGAUUAU Crbn rno-miR-133b 804 833 AUCGAC--CA--ACU----UCCCCUGGUU ||||| || ||| :|||||::| AAGCUGCAGUAAUGAAGUGGGGGGAUUAU Crbn rno-miR-139 1 15 UCUGUGCACGU-GACAUCU- ||||| ||||||: ------GUGCACCUGUAGGA Crbn rno-miR-140* 190 214 ACAGG--CACCAAGAUGGGACA-CCAU |||| ||| :||:||||| || GGUCCCAGUGA--UUAUCCUGUUGGA- Crbn rno-miR-150 805 829 GUGAC--CAUGUUCCCAACCCUCU- :||| ||| ||||:|: AGCUGCAGUAAUGAAG-UGGGGGGA Crbn rno-miR-151* 361 377 AUGAUCUGACACUCGAGGAGCU :|||| ||||||: ---AGGACUUU--GCUCCUUU- Crbn rno-miR-187 316 340 GCCGA--CG-UUGUGUUCUGUGCU- ||: |: |:||||||||| || UGGUUUGGUAAGCACAAGACA-GAG Crbn rno-miR-189 313 344 -UGACUAUAG---UCGA-----GUCAUCCGUG :|||:| ||| ||| ||||| AGCUGGUUUGGUAAGCACAAGACAG-AGGCAA Crbn rno-miR-194 852 880 AGGUGUACCUCA------ACGAC-AAUGU || | |||| ||||| |||| ACCUGA-GGAGAUCCACAUGCUGGUUACC Crbn rno-miR-196a 89 107 GGUUGUUGUACUUUGAUGGAU |||:||| ::||||| --UACAGCAUUUGGCUACCA- Crbn rno-miR-19a 538 557 AGUCAAAACGUAUC-UAAACGUGU ||||||| ||||||| ----AUUUGCAUUUCAUUUGCAA- Crbn rno-miR-200a 333 353 -UGUAGCAAUGGUCUGUCACAAU ||| :| ||:|||||| GACAGAG--GCAAGGCAGUGUA- Crbn rno-miR-203 532 552 GAUCACCAGGAUU--UGUAAAGUG- |||| :|||||||: -----UGUCCAAUUUGCAUUUCAUU Crbn rno-miR-20b* 816 850 GUCUUCAC------------GAGUG-UGACGUCA- |||||| ||:|| :||||||| -UGAAGUGGGGGGAUUAUGCCUUACUGCUGCAGUA Crbn rno-miR-21 312 330 AGUUGUAGUCAGACUAUUCGAU |:| :||:||:||||| -AAGCU--GGUUUGGUAAGCA- Crbn rno-miR-218 151 175 -UGUACCAAUCUAG---UUCGUGUU :|| ||||:|||: |||:|| UGCAAGGUUGGAUUCAGAAGUACU- Crbn rno-miR-22* 603 627 -UUUCGAA--CGGUGACUUCUUGA ||||:| || |||||||::| UAAAGUUAAAGCAACUGAAGGGCA Crbn rno-miR-25 331 352 AGUCUGGCUCUGUUCACGUUAC- |||| |||:|||| |||:|| -AAGACAGAGGCAAG-GCAGUGU Crbn rno-miR-28 361 377 GAGUUAUCUGACACUCGAGGAA- :|||| ||||||| -----AGGACUUU--GCUCCUUU Crbn rno-miR-292-5p 427 453 GUUUUCUCGGGG-----GUCAAACUCA ||||||: ||||||||| -UAAAGAGUAAAAUAAGCAGUUUGAGC Crbn rno-miR-296 808 839 -UGUCCUAACU---CCCCCC-----CGGGA- :||| ||| |||||| |||:| UGCAGUAAUGAAGUGGGGGGAUUAUGCCUUA Crbn rno-miR-298 821 847 -CCUUCUUGU--CGGGAGGA-GACGG || |:|: |||: || |||| UGGGGGGAUUAUGCCUUACUGCUGCA Crbn rno-miR-301 480 515 UACG--------AAACUGUUAUGAUA--ACGUGAC ||| |||||::| ||:| ||::|| UUGCACUAUUUAUUUGAUGAGCCUGUCAUGUGCUA Crbn rno-miR-31 41 68 -GUCGAUAC-GGUC-GUAGA-ACGGA- ||| || |||| |||| ||||| UCAGAUCUGCCCAGACAUCACUGCCUC Crbn rno-miR-320 365 394 -AAGCG-GGAGAGUUG-----GGUCGAAAA ||:|| |||:||||: ::||||| CUUUGCUCCUUUCAAUUUUCUUUAGCUUG- Crbn rno-miR-324-3p 307 352 -GGUCG-------------UCGUGGA------CC---CCGUCACC |||| ||||| || ||||||| UCCAGAAGCUGGUUUGGUAAGCACAAGACAGAGGCAAGGCAGUGU Crbn rno-miR-324-5p 808 836 -UGUGGUUACGGGA-UCCCCU---ACGC :|| :|||| :||||| ||| UGCAGUAAUGAAGUGGGGGGAUUAUGCC Crbn rno-miR-338 855 876 AGUUGUUUUAG-UGACUACGACCU :| :|:||| || ||||||| -UGAGGAGAUCCAC--AUGCUGGU Crbn rno-miR-345 326 351 -CGUGACCUGA-UCC---CCAGUCGU |||| ||| ||| || |||: AGCACAAGACAGAGGCAAGG-CAGUG Crbn rno-miR-346 309 349 -UCUCCGUCCG--------------UGAGUCCGU-CUGU- ||| || ||: || ||||| |:|| CAGAAGCUGGUUUGGUAAGCACAAGACAGAGGCAAGGCAG Crbn rno-miR-34a 43 67 UUGUUGGUCGAUUCUG---UGACGGU :|:| || |||| |||||| --AGAUCUGCCCAGACAUCACUGCCU Crbn rno-miR-34b 43 68 GUUAGUCGAUUAAU--GUGACGGAU :||| || |||||||| AGAUCUGCCCAGACAUCACUGCCUC Crbn rno-miR-34c 43 68 CGUUAGUCGA--UUGAUGUGACGGA- :||| || :|| |||||||| -AGAUCUGCCCAGACAUCACUGCCUC Crbn rno-miR-363-3p 333 357 -UGUCUACCUA--UGGCACGUUAA- ||||| || :| |||:|||| GACAGA-GGCAAGGCAGUGUAAUUG Crbn rno-miR-365 811 833 -UAUUCCUAAAAAUCCCCGUAAU- :||| || |:|||| |||| AGUAAUGAAG--UGGGGGGAUUAU Crbn rno-miR-383 48 73 UCGGUGUC---AGUGGA--AGACUAGA ||| ||| ||||: |||||| UGCC-CAGACAUCACUGCCUCUGAUA- Crbn rno-miR-409-3p 107 122 CCCCAAGUGGCUCGUUGUAA ||||| ||||||| --AGUUCAA-GAGCAACC-- Crbn rno-miR-421 481 504 GUUGUUU---GUAAAUUACUCCGG- :|| :||||:||||| || -UGCACUAUUUAUUUGAUGAG-CCU Crbn rno-miR-422b 92 114 -CGGAAGACUGA-GGUUCAGGUCA || |:||:|| ||||||:|| AGCA-UUUGGCUACCAAGUUCAA- Crbn rno-miR-431 326 349 ACGUA--CUGCCGGACGUUCUGU- ||| ||| | |||||:|| AGCACAAGACAGAG-GCAAGGCAG Crbn rno-miR-433 481 511 -UGUGG--------CUCCUCGGGUAGUACUA :|||: || |||||::||||| UGCACUAUUUAUUUGAUGAGCCUGUCAUGU- Crbn rno-miR-449 44 67 -UGGUCGA--UUGUUAUGUGACGGU |:| || :||| ||||||| GAUCUGCCCAGACAU--CACUGCCU Crbn rno-miR-483 328 352 -UGUUCUGCCCUCCCCUCC-UCACU ||||||| |||| ||| |||| CACAAGACA-GAGGCAAGGCAGUGU Crbn rno-miR-485 55 70 CUUAAGUAGUGCCGGUCGGAGA- |||||| |||||| ----ACAUCACU----GCCUCUG Crbn rno-miR-503 168 184 GUCAUGACAAGGGCGACGAU- |||||| :||||:|| AAGUACU-----UGCUGUUAG Crbn rno-miR-540 9 29 GGUCCUAGCUG-GAGACUGGA :|||| :||| :|||||| GUAGGAGUGACUUUCUGACA- Crbn rno-miR-9 836 862 AGUAUGUCGA--UC-UAUUGG-UUUCU- ||| ||| || ||:||| :|:|| --UUACUGCUGCAGUAUGACCUGAGGAG Crbn rno-miR-92 337 356 GUCCGGCCCUGUUCACGUUAU |||| |:|| |||:||| GAGGCAA-GGCA-GUGUAAUU Crbn rno-let-7b 49 68 uuGGUGUGUUGGAUGAUGGAGu ||| ||| | |||:|||| gcCCAGACATC--ACTGCCTCt Crbn rno-let-7c 49 68 uuGGUAUGUUGGAUGAUGGAGu ||| ||| | |||:|||| gcCCAGACATC--ACTGCCTCt Crbn rno-let-7d 46 68 uGAUACGU-UGGA-UGAUGGAGA ||: || || | |||:||||| tCTGCCCAGACATCACTGCCTCT Crbn rno-let-7f 49 68 uuGAUAUGUUAGAUGAUGGAGu | | || ||| |||:|||| gcCCAGAC-ATC-ACTGCCTCt Crbn rno-miR-101b 384 407 GAAGUCG-AUAGUGUC-AUGACau |||:||| |:|| || ||||| CTTTAGCTTGTCTAAGATACTGat Crbn rno-miR-103 844 875 aGU-AU-CGGGAC------AUGU-UACGACga || || | |||| | || |||||| gCAGTATGACCTGAGGAGATCCACATGCTGgt Crbn rno-miR-107 846 875 acuauCGGGAC------AUGU-UACGACga | |||| | || |||||| agtatGACCTGAGGAGATCCACATGCTGgt Crbn rno-miR-133a 803 832 ugUCGAC--CA--ACUU----CCCCUGGUu ||||| || |||| |||||::| gaAGCTGCAGTAATGAAGTGGGGGGATTAt Crbn rno-miR-140* 190 214 aCAGG--CACCAAGAUGGGAC-ACCau |||| ||| | ||:|||| ||| gGTCCCAGTGAT--TATCCTGTTGGat Crbn rno-miR-151* 358 377 augauCUGACACUCGAGGAgcu |||| | |||||| aaaagGACTTT--GCTCCTttc Crbn rno-miR-181a 279 307 ugaGUGGCUGUCG-------CAACUUACAA ||:|| | || | |||||||| aagCATCG-CTGCTCTAAATGATGAATGTT Crbn rno-miR-181b 280 307 ggGUGGCUGUCG-------UUACUUACAA ||:|| | || :||||||||| agCATCG-CTGCTCTAAATGATGAATGTT Crbn rno-miR-189 308 330 uGACUAUAGUCGAGUCAUCCGUG | || : ::|:|::||| |||| cCAGAAGCTGGTTTGGTAAGCAC Crbn rno-miR-194 863 879 AGGUGUACCUCAACGA-CAAUGu |||||| |||| ||||| TCCACA------TGCTGGTTACc Crbn rno-miR-196a 633 657 gguugUUGUAC---UU-UGAUGGAU ||| || || |||||||| aaataAACCTGGCCAACACTACCTA Crbn rno-miR-196a 87 107 gguUGUUGUACUUUGAUGGau |||:||| ::||||| gttACAGCATTTGGCTACCaa Crbn rno-miR-196b 632 657 ggUUGUU--GUCC--UU-UGAUGGAU ||:|| | || || |||||||| taAATAAACCTGGCCAACACTACCTA Crbn rno-miR-19a 534 557 AGUCAAAACGU-AUCUAAACGUgu || |||||| | ||||||| TCCAATTTGCATTTCATTTGCAaa Crbn rno-miR-19b 345 373 aGUCA-A--AACG--UACCU-AAACGUGu |||| | |||: | ||| ||||| | gCAGTGTAATTGTAAAAGGACTTTGCTCc Crbn rno-miR-200a 334 353 UGUAGCAAUGGUCUGUCACAau ||| | :| ||:|||||| ACA--GAGGCAAGGCAGTGTaa Crbn rno-miR-20b* 826 848 gucuucAC-GAGUG-UGACGUCA || ||:|| :||||||| ggattaTGCCTTACTGCTGCAGT Crbn rno-miR-21 308 330 aGUUGUAG-UCAGACUAUUCGau ||: | | :||:||:||||| cCAGAAGCTGGTTTGGTAAGCac Crbn rno-miR-218 313 332 uguACCAAUCUAGUUCGUGUU ||||| |:| |||||||| agcTGGTTTGGT-AAGCACAA Crbn rno-miR-218 152 175 uGUACCAAUCU-AG--UUCGUGuu || ||||:|| || |||:|| gCAAGGTTGGATTCAGAAGTACtt Crbn rno-miR-22* 604 626 UUUCGA--ACGGUGACUUCUUGa ||||:| || |||||||::| AAAGTTAAAGCAACTGAAGGGCa Crbn rno-miR-25 330 355 agUCUGGCUCUGU----UCACGUUAc |||| |||:|| ||||:||| caAGACAGAGGCAAGGCAGTGTAATt Crbn rno-miR-28 356 375 gAGUUAUCUGACACUCGAGGAA | || :|||| | ||||||| gTAAAAGGACTTT--GCTCCTT Crbn rno-miR-292-5p 426 452 guUUUCUC-----GGGGGUCAAACUCa |||||| : ||||||||| ttAAAGAGTAAAATAAGCAGTTTGAGc Crbn rno-miR-296 809 831 uGUCCUAAC-UC-CCCCCCggga ||| | || || |||||| gCAGTAATGAAGTGGGGGGatta Crbn rno-miR-298 823 846 CCUUCUUGU-CGGGA-GGAGACGg ||::|| :| |||:| |: |||| GGGGGATTATGCCTTACTGCTGCa Crbn rno-miR-31 42 66 GUCGAUAC-GGUC-GUAG-AACGGA ||| | || |||| |||| ||||| CAGATCTGCCCAGACATCACTGCCT Crbn rno-miR-320 366 394 AAGCG-GGAGAGUU-----GGGUCGAAaa ||:|| |||:|||| :::||||| TTTGCTCCTTTCAATTTTCTTTAGCTTgt Crbn rno-miR-324-3p 334 351 gGUCGUCGUGGACCCCGUCACc ||| :||| ||||||| aCAGAGGCA----AGGCAGTGt Crbn rno-miR-324-5p 809 832 uGUGGUUACGGGA-UCCCCUAcgc || :|||| | :|||||| gCAGTAATGAAGTGGGGGGATtat Crbn rno-miR-338 854 875 aguUGUUUUAGUGACUACGACCu | :|:||| | ||||||| ctgAGGAGATC-CACATGCTGGt Crbn rno-miR-344 496 519 UGC-CAGUCCGAAACCGAUCUAGu |:| | | | | | |||||||| ATGAGCCTGTCATGTGCTAGATCc Crbn rno-miR-345 312 329 cguGACCUGAUCCCCAGUCGU |||| :| ||| |||| aagCTGGTTT---GGTAAGCA Crbn rno-miR-346 332 351 UCUCCGUCCGUGAGUCCGUCugu ||| ||||| |||||| AGACAGAGGCA---AGGCAGtgt Crbn rno-miR-34a 40 66 UUGU-UGGUCGAUUCU---GUGACGGu | || |:| || ||| ||||||| ATCAGATCTGCCCAGACATCACTGCCt Crbn rno-miR-34b 42 67 GU-UAGUC-GAUUAAU-GUGACGGAu || ||| | | |: | |||||||| CAGATCTGCCCAGACATCACTGCCTc Crbn rno-miR-34c 41 66 cGU-UAGUC--GAUUGAUGUGACGGA || ||| | | :|| |||||||| tCAGATCTGCCCAGACATCACTGCCT Crbn rno-miR-361 1 29 CAUGGGGA---CCU--CU--AAGACUAUu ||:| ||| ||| || |||||| | GTGCACCTGTAGGAGTGACTTTCTGACAt Crbn rno-miR-363-3p 334 355 UGUCUACC--UAUGGCACGUUAA ||||| || | :| |||:|||| ACAGA-GGCAAGGCAGTGTAATT Crbn rno-miR-365 812 831 uAUUCCUAAAAAUCCCCGUAAU ||| || |:|||| |||| gTAATGA--AGTGGGGGGATTA Crbn rno-miR-383 48 73 uCGGUGUC---AGUG--GAAGACUAga ||| ||| |||| | |||||| tGCC-CAGACATCACTGCCTCTGATat Crbn rno-miR-409-3p 105 123 cccCAAGUGGCUCGUUGUAa ||||| ||||||| | caaGTTCA-AGAGCAACCTg Crbn rno-miR-421 483 503 GUUGUUUGUAAAUUACUCCGg || :| :||||:||||| | CACTATTTATTTGATGAGCCt Crbn rno-miR-422b 93 114 CGGAAGACUGA-GGUUCAGGUca || || ||:|| ||||||:|| GCATT-TGGCTACCAAGTTCAag Crbn rno-miR-431 328 347 acGUACUGCCGGACGUUCUGU || ||| | |||||:|| caCAAGACAG-AGGCAAGGCA Crbn rno-miR-433 490 511 uguggCUCCUCGGGUAGUACua || |||||::||||| tatttGATGAGCCTGTCATGtg Crbn rno-miR-449 40 66 UGGUC--GAUUGUUAU---GUGACGGu |:||| ||: | | | ||||||| ATCAGATCTGCCCAGACATCACTGCCt Crbn rno-miR-483 329 351 UGUUCUGCCCUCCCCUCC-UCACu ||||||| |||| ||| |||| ACAAGAC-AGAGGCAAGGCAGTGt Crbn rno-miR-485 51 68 cuuaaGUAGUGCCGGUCGGAGA ||||| | |||||| ccagaCATCA----CTGCCTCT Crbn rno-miR-489 205 224 cGACGGUAUAUACACUACAGUAA |||::: |||| |||||||| cCTGTTGGATAT---ATGTCATT Crbn rno-miR-503 165 182 GUCAUGACAAGGGCGACGAU ||| | || |::||||:|| CAGAA--GTACTTGCTGTTA Crbn rno-miR-540 9 29 ggUCCUAGCUG-GAGACUGga |||| :||| :|||||| gtAGGAGTGACTTTCTGACat Crbn rno-miR-543 275 308 UCUUCACGUGGCG-------------CUUACAAa | || |||:||| ||||||| AAAAAAGCATCGCTGCTCTAAATGATGAATGTTc Crbn rno-miR-9 834 859 aGUAUGUCGA--UC-UAUUGGUUUCu | ||| ||| || ||:||| :|| cCTTACTGCTGCAGTATGACCTGAGg Crbn rno-miR-181a 300 307 ----------------UG-AGUGGCU-GUC--GCAACUUACAA :| ||:|:| | :| |||||||| AUGGAACAGGAAAAAAGCAUCGCUGCUCUAAAUGAUGAAUGUUC Crbn rno-miR-181b 300 307 G------------------GGUGGCUG---UCGUUACUUACAA :|:|:| | :||||||||| AUGGAACAGGAAAAAAGCAUCGCUGCUCUAAAUGAUGAAUGUUC Crbn rno-miR-196a 650 657 ------------------------------GGUUGUUGUACUUUGAUGGAU ||||| |||||||| AACUGAAGGGCAUUAUUUAAAUAAACCUGGCCAAC--------ACUACCUAU Crbn rno-miR-196b 650 657 ------------------------------GGUUGUUGUCCUUUGAUGGAU ||||| |||||||| AACUGAAGGGCAUUAUUUAAAUAAACCUGGCCAAC--------ACUACCUAU Crbn rno-miR-203 543 550 GAUCAC-------------------CAGGAUU--UGUAAAGUG |||| :|||||||: UGUGCUAGAUCCCUUUAAUGUAUAUGUCCAAUUUGCAUUUCAUU Crbn rno-miR-218 325 332 ------------------------UGUACCAAUCUAGUUCGUGUU :| ||||| :|||||||| CUCUAAAUGAUGAAUGUUCCAGAAGC-UGGUUUGG-UAAGCACAAG Crbn rno-miR-292-5p 445 452 GU----------------UUUCUCGGGG-----GUCAAACUCA ||||||: ||||||||| GUAAAUUUUGAAAAUAUUAAAGAGUAAAAUAAGCAGUUUGAGC Crbn rno-miR-324-3p 344 351 -----------GGUCGU-CGUGGA------CC---CCGUCACC : |:| |||| || ||||||| CAGAAGCUGGUUUGGUAAGCACAAGACAGAGGCAAGGCAGUGU Crbn rno-miR-338 868 875 AG---------------------UUGUUUUAG-UGACUACGACCU :| :|:||| || ||||||| GCCUUACUGCUGCAGUAUGACCUGAGGAGAUCCAC--AUGCUGGU Crbn rno-miR-344 512 519 UGC------------------------CAGUCCGAAACCGAUCUAGU |||| |: |||||||| UAUUUGCACUAUUUAUUUGAUGAGCCUGUCAUGU----GCUAGAUCC Crbn rno-miR-34a 59 66 UUGUU----------------------GGUCGAUUCUGUGACGGU |||| ||||||| UGACAUACUUUCUCAAAUCAGAUCUGCCCAGACAU--CACUGCCU Crbn rno-miR-34b 60 67 G------------------UUAGUCGAUUAAU--GUGACGGAU :||| || |||||||| GACAUACUUUCUCAAAUCAGAUCUGCCCAGACAUCACUGCCUC Crbn rno-miR-34c 59 66 CG------------------UUAGUCGA--UUGAUGUGACGGA :||| || :|| |||||||| UGACAUACUUUCUCAAAUCAGAUCUGCCCAGACAUCACUGCCUC Crbn rno-miR-449 59 66 U--------------------------GGUCGAUUGUUAUGUGACGGU |||| ||| ||||||| UGACAUACUUUCUCAAAUCAGAUCUGCCCAG---ACAU--CACUGCCU Crbn rno-miR-489 217 224 C-----------------------GACGGUAUAUACACUACAGUAA |||::: |||| |||||||| AGUCGCUUGGUCCCAGUGAUUAUCCUGUUGGAUAU---AUGUCAUUG Crbn rno-miR-543 301 308 -------UCUUCA--CGUGGC-------------GCUUACAAA :||| |||:|| :||||||| UGGAACAGGAAAAAAGCAUCGCUGCUCUAAAUGAUGAAUGUUC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Crbn RAID00429688 rno-miR-224-5p miRNA MIMAT0003119 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID00436141 rno-miR-466b-2-3p miRNA MIMAT0017286 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID00454603 rno-miR-181d-5p miRNA MIMAT0005299 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID00456995 rno-miR-488-3p miRNA MIMAT0005341 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID00459736 rno-miR-365-3p miRNA MIMAT0001549 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID00554393 rno-miR-196a-5p miRNA MIMAT0000871 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID00638091 rno-miR-376b-5p miRNA MIMAT0003195 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID00715587 rno-miR-301b-3p miRNA MIMAT0005304 Crbn mRNA 297498 Prediction 0.2202 Crbn RAID00723272 rno-miR-449a-5p miRNA MIMAT0001543 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID00748277 rno-miR-292-5p miRNA MIMAT0000896 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID00780816 rno-miR-344a-5p miRNA MIMAT0004654 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID01243110 rno-miR-484 miRNA MIMAT0005319 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID01272827 rno-miR-19b-3p miRNA MIMAT0000788 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID01409898 rno-miR-361-5p miRNA MIMAT0003117 Crbn mRNA 297498 Prediction 0.2202 Crbn RAID01745171 rno-miR-376c-5p miRNA MIMAT0017219 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID01997806 rno-miR-6321 miRNA MIMAT0025059 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02030825 rno-miR-196b-5p miRNA MIMAT0001082 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02070775 rno-miR-338-3p miRNA MIMAT0000581 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02127346 rno-miR-412-3p miRNA MIMAT0003124 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02143412 rno-miR-466b-4-3p miRNA MIMAT0037262 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02153862 rno-miR-181a-5p miRNA MIMAT0000858 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02213344 rno-miR-503-5p miRNA MIMAT0003213 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02267700 rno-miR-449c-3p miRNA MIMAT0017804 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02352213 rno-miR-181c-5p miRNA MIMAT0000857 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02492630 rno-miR-196c-5p miRNA MIMAT0005303 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02495677 rno-miR-181b-5p miRNA MIMAT0000859 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02640235 rno-miR-218a-5p miRNA MIMAT0000888 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02726106 rno-miR-142-3p miRNA MIMAT0000848 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID02800643 rno-miR-203a-3p miRNA MIMAT0000876 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID03029856 rno-miR-34a-5p miRNA MIMAT0000815 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID03079135 rno-miR-294 miRNA MIMAT0012848 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID03153553 rno-miR-130a-3p miRNA MIMAT0000836 Crbn mRNA 297498 Prediction 0.2202 Crbn RAID03175987 rno-miR-3572 miRNA MIMAT0017853 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID03254885 rno-miR-34c-5p miRNA MIMAT0000814 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID03319053 rno-miR-301a-3p miRNA MIMAT0000552 Crbn mRNA 297498 Prediction 0.2202 Crbn RAID03398361 rno-miR-6334 miRNA MIMAT0025075 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID03428134 rno-miR-21-5p miRNA MIMAT0000790 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID03469502 rno-miR-130b-3p miRNA MIMAT0000837 Crbn mRNA 297498 Prediction 0.2202 Crbn RAID03637319 rno-miR-3074 miRNA MIMAT0017815 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID03942237 rno-miR-29a-5p miRNA MIMAT0004718 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID03959951 rno-miR-19a-3p miRNA MIMAT0000789 Crbn mRNA 297498 Prediction 0.1828 Crbn RAID04055117 rno-miR-139-5p miRNA MIMAT0000845 Crbn mRNA 297498 Prediction 0.1828