DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004646 rno-miR-338* 364050 Wdr42a gugagucgugguccuAUAACAa |||||| guaucaaguuaaaauUAUUGUc 2 8 828 849 [rn4:13:88186423-88186444:+] 0.5886 120 6 -6.53 -0.1098 MIMAT0000585 rno-miR-340-3p 364050 Wdr42a ccGAUAUUUCAUUGACUC-UGCCu ||: ::|| :|| ||| |||| auCUGAGGAG-GACAGAGCACGGg 2 22 130 152 [rn4:13:88185725-88185747:+] 0.6272 123 0 -18.93 -0.1678 MIMAT0004652 rno-miR-342-5p 364050 Wdr42a gaGUUAGUGUCUAUCGUGGGGa ||: ||: |||||||| ccCAGCCAU-CCCAGCACCCCc 2 21 554 574 [rn4:13:88186149-88186169:+] 0.5886 146 7 -20.08 -0.4034 MIMAT0000607 rno-miR-7a* 364050 Wdr42a uaccGUCUGACACUAAACAAca ::|||| | |||||| acuuUGGACU-U--UUUGUUua 3 19 97 115 [rn4:13:88185692-88185710:+] 0.6272 125 0 -6.92 -0.1473 MIMAT0000607 rno-miR-7a* 364050 Wdr42a uaccgucugacacuAAACAAca |||||| guuuguuuucuuuuUUUGUUuu 3 9 445 466 [rn4:13:88186040-88186061:+] 0.4582 120 0 -2.30 -0.1319 MIMAT0003152 rno-miR-22* 364050 Wdr42a auuucgaacggugaCUUCUUGa ||||||| agggucaagaggugGAAGAACa 2 9 684 705 [rn4:13:88186279-88186300:+] 0.5886 140 7 -11.58 -0.5419 MIMAT0004714 rno-miR-26b* 364050 Wdr42a cuCGGUUCAUUACC-UCUUGUCc |:|||| ::||| ||||||| ggGUCAAGAGGUGGAAGAACAGg 2 21 685 707 [rn4:13:88186280-88186302:+] 0.5886 171 7 -31.93 -0.6460 MIMAT0004721 rno-miR-30b-3p 364050 Wdr42a cuGCAUUUGUAGGUGUAGGGUc | |:|:|| ||||||||| ccCCUGAGCAAGCACAUCCCAg 2 21 500 521 [rn4:13:88186095-88186116:+] 0.5886 168 7 -24.92 -0.1477 MIMAT0004721 rno-miR-30b-3p 364050 Wdr42a cugcaUUUGUAGGU--GUAGGGUc :|:| ||| ||||||| cuuaaGAGCCCCCAGCCAUCCCAg 2 18 544 567 [rn4:13:88186139-88186162:+] 0.5886 148 7 -21.50 -0.1225 MIMAT0004728 rno-miR-124* 364050 Wdr42a uaguuccAGGCGACACUUGUGc |:| || ||||||| cuauauaUUCUCUAUGAACACa 2 16 864 885 [rn4:13:88186459-88186480:+] 0.5886 155 7 -12.13 -1.2257 MIMAT0004743 rno-miR-300-5p 364050 Wdr42a uguuuccuAUUGGAGAGAAGUu |: :||||||||| caguacuuUGCUCUCUCUUCAu 2 15 616 637 [rn4:13:88186211-88186232:+] 0.5886 154 7 -16.15 -0.5475 MIMAT0003115 rno-miR-207 364050 Wdr42a uucccuccuCUCGGUC-CUCUUCg |:||||| |||||| aguaccaacGGGCCAGAGAGAAGg 2 15 331 354 [rn4:13:88185926-88185949:+] 0.6272 130 6 -21.82 -0.1293 MIMAT0003177 rno-miR-541 364050 Wdr42a ucacACUGGUUGUAGUCUUAGGGAa || | :| :|: ||| ||| uuauUGUCAGAAGUUUAAAUACCUa 2 22 842 866 [rn4:13:88186437-88186461:+] 0.5886 121 0 -9.18 -0.1349 MIMAT0005289 rno-miR-881 364050 Wdr42a agauaagucuuuACGGUGUCAa | ||||||| auucucuguccuUACCACAGUa 2 11 599 620 [rn4:13:88186194-88186215:+] 0.5886 142 7 -12.43 -1.0868 MIMAT0005313 rno-miR-423 364050 Wdr42a ugACUCCCCGGAGUCUGGCUCGa |||| | | ||||||||| agUGAGAG--AUGAGACCGAGCc 2 22 180 200 [rn4:13:88185775-88185795:+] 0.6272 158 7 -23.51 -0.3278 MIMAT0005319 rno-miR-484 364050 Wdr42a uagCCCUCCCCUGACUC-GGACu | || | ||| ||| |||| ugaGAGAUGAGACCGAGCCCUGa 2 20 182 204 [rn4:13:88185777-88185799:+] 0.6272 127 0 -18.56 -0.6576 MIMAT0005323 rno-miR-532-3p 364050 Wdr42a acgUUCGGAAC-CCACACCCUCc :|| || | | |||||||| augGAGACUGGAGAUGUGGGAGg 2 20 664 686 [rn4:13:88186259-88186281:+] 0.5886 158 7 -25.96 -0.4411 MIMAT0012836 rno-miR-628 364050 Wdr42a ggagagcaUUUAU-ACAGUCGUa || || |||||| | caaguuaaAAUUAUUGUCAGAAg 2 15 832 854 [rn4:13:88186427-88186449:+] 0.5886 121 0 -9.39 -0.1388 MIMAT0012838 rno-miR-653 364050 Wdr42a gucaucucuuacaAAGUUGUg ||||||| ccaggcccuuacaUUCAACAg 2 9 70 90 [rn4:13:88185665-88185685:+] 0.6272 140 7 -9.06 -0.6967 MIMAT0012843 rno-miR-876 364050 Wdr42a accACUAAGUGUCUCUUUAGGu || ||: | |:||||||| uccUGUUUUUCUGGGAAAUCCu 2 20 524 545 [rn4:13:88186119-88186140:+] 0.5886 163 7 -14.88 -0.2243 MIMAT0012851 rno-miR-547 364050 Wdr42a gagugaauuuCUUCAUGGUu | ||||||| ggugggggguGUAGUACCAa 2 11 319 338 [rn4:13:88185914-88185933:+] 0.6272 142 7 -14.17 -0.3876 MIMAT0000566 rno-miR-329 364050 Wdr42a uuUUUCCAAUCGACCCACA-CAa ::||| |:| |||||| || uuGGAGGGUGG-GGGGUGUAGUa 2 21 313 334 [rn4:13:88185908-88185929:+] 0.6272 122 0 -18.95 -0.3211 MIMAT0004650 rno-miR-340-5p 364050 Wdr42a uuAGUCAGAGUAACGAAAUAUu |:|| | | :|||||| ugUUAGAGGCCUAAUUUUAUAu 2 21 771 792 [rn4:13:88186366-88186387:+] 0.5886 132 6 -5.36 -0.1118 MIMAT0000602 rno-miR-20a 364050 Wdr42a gaUGGACGUGAUAUU--CGUGAAAu || | || | || ||||||| uuACAUUCAACAGAAAUGCACUUUg 2 22 78 102 [rn4:13:88185673-88185697:+] 0.6272 152 7 -12.22 -0.8504 MIMAT0000786 rno-miR-17-5p 364050 Wdr42a gaUGGACG-UGACAUU-CGUGAAAc || | | || | || ||||||| uuACAUUCAACAGAAAUGCACUUUg 2 22 78 102 [rn4:13:88185673-88185697:+] 0.6272 155 7 -14.33 -0.8504 MIMAT0000787 rno-miR-18a 364050 Wdr42a gauAGACGUGAUCU---ACGUGGAAu |:|| :|||: | |||||| cucUUUGGUUUAGGGUUUUCACCUUu 2 21 369 394 [rn4:13:88185964-88185989:+] 0.6272 123 6 -15.68 -0.1275 MIMAT0000791 rno-miR-22 364050 Wdr42a uguCAAGAAGUUGA-CCGUCGAa | || | : || ||||||| cccGCUCCU-GCCUGGGCAGCUc 2 20 38 59 [rn4:13:88185633-88185654:+] 0.6272 144 7 -14.36 -0.3327 MIMAT0000804 rno-miR-30c 364050 Wdr42a cgacucucacauccuACAAAUgu |||||| gcacuuuggacuuuuUGUUUAaa 3 9 95 117 [rn4:13:88185690-88185712:+] 0.6272 120 0 -5.21 -0.1602 MIMAT0000805 rno-miR-30e 364050 Wdr42a gaaggucaguuccuACAAAUgu |||||| cacuuuggacuuuuUGUUUAaa 3 9 96 117 [rn4:13:88185691-88185712:+] 0.6272 120 0 -6.35 -0.1618 MIMAT0000806 rno-miR-30b-5p 364050 Wdr42a ucgacucacauccuACAAAUgu |||||| cacuuuggacuuuuUGUUUAaa 3 9 96 117 [rn4:13:88185691-88185712:+] 0.6272 120 0 -5.72 -0.1602 MIMAT0000807 rno-miR-30d 364050 Wdr42a gaaggucagccccuACAAAUgu |||||| cacuuuggacuuuuUGUUUAaa 3 9 96 117 [rn4:13:88185691-88185712:+] 0.6272 120 0 -6.28 -0.1618 MIMAT0000808 rno-miR-30a 364050 Wdr42a gaaggucagcuccuACAAAUgu |||||| cacuuuggacuuuuUGUUUAaa 3 9 96 117 [rn4:13:88185691-88185712:+] 0.6272 120 0 -6.35 -0.1618 MIMAT0000812 rno-miR-33 364050 Wdr42a acGUUACGUUGAUGUUACGUg | ||| ||| |||||||| cuCUAUG-AAC-ACAAUGCAa 2 20 873 891 [rn4:13:88186468-88186486:+] 0.5886 159 7 -14.78 -1.1444 MIMAT0000817 rno-miR-93 364050 Wdr42a gaUGGACG-UG-CUUGUCGUGAAAc || | | || ||| ||||||| uuACAUUCAACAGAAAUGCACUUUg 2 22 78 102 [rn4:13:88185673-88185697:+] 0.6272 155 7 -17.78 -0.8504 MIMAT0000825 rno-miR-106b 364050 Wdr42a uagacgUGACAGU-CGUGAAAu || | | ||||||| cauucaACAGAAAUGCACUUUg 2 16 81 102 [rn4:13:88185676-88185697:+] 0.6272 142 7 -10.08 -0.8504 MIMAT0004729 rno-miR-125a-3p 364050 Wdr42a ccgaGGGUUCUUGGAGUGGAca :::|:|: ::|||||| uuggUUUAGGGUUUUCACCUuu 3 19 373 394 [rn4:13:88185968-88185989:+] 0.6272 134 0 -18.34 -0.1034 MIMAT0000862 rno-miR-185 364050 Wdr42a agucCUUGACGGAAAGAGAGGu | || ||| ||||||| cccaGCACCCCCUCUCUCUCCc 2 19 563 584 [rn4:13:88186158-88186179:+] 0.5886 158 7 -19.00 -0.2117 MIMAT0000863 rno-miR-186 364050 Wdr42a ucggguuuuccucuuAAGAAAc |||||| acuggcuucuuuuucUUCUUUu 2 8 269 290 [rn4:13:88185864-88185885:+] 0.6272 120 6 -4.29 -0.1152 MIMAT0003196 rno-miR-376b-3p 364050 Wdr42a uucaccUACA-AGGAGAUACUa || | |:|||||||| auaccuAUAUAUUCUCUAUGAa 2 16 860 881 [rn4:13:88186455-88186476:+] 0.5886 154 7 -12.77 -1.0353 MIMAT0003211 rno-miR-20b-5p 364050 Wdr42a uggacgugauacuCGUGAAAc ||||||| auucaacagaaauGCACUUUg 2 9 82 102 [rn4:13:88185677-88185697:+] 0.6272 140 7 -12.19 -0.8504 MIMAT0005309 rno-miR-384-5p 364050 Wdr42a uguaacGGAUCCU---UAACAAAUgu |:| ||| ||||||| aaugcaCUUUGGACUUUUUGUUUAaa 3 18 92 117 [rn4:13:88185687-88185712:+] 0.6272 128 0 -12.26 -0.1618 MIMAT0005311 rno-miR-410 364050 Wdr42a uguccgguagacacAAUAUAa |||||| uuagaggccuaauuUUAUAUc 2 8 773 793 [rn4:13:88186368-88186388:+] 0.5886 120 6 -10.25 -0.2340 MIMAT0005320 rno-miR-495 364050 Wdr42a uuCUUCACGUGGUACAAACAAa |::| |: :: |||||||| uaGGGGGGU-UUUUGUUUGUUu 2 21 432 452 [rn4:13:88186027-88186047:+] 0.4582 150 7 -14.93 -0.9537 MIMAT0005320 rno-miR-495 364050 Wdr42a uucuuCACGUGGUACAAACAAa || : |: | |||||| uguuuGUUUUCUUUUUUUGUUu 2 18 444 465 [rn4:13:88186039-88186060:+] 0.4582 121 6 -5.99 -0.1276

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055110 Dcaf8 Rattus norvegicus 364050

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Dcaf8 RAID00170297 rno-miR-186-5p miRNA MIMAT0000863 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID00311775 rno-miR-384-5p miRNA MIMAT0005309 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID00382279 rno-miR-93-5p miRNA MIMAT0000817 Dcaf8 mRNA 364050 Prediction 0.2202 Dcaf8 RAID00424819 rno-miR-20b-5p miRNA MIMAT0003211 Dcaf8 mRNA 364050 Prediction 0.2202 Dcaf8 RAID00456594 rno-miR-329-3p miRNA MIMAT0000566 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID00600501 rno-miR-92a-3p miRNA MIMAT0000816 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID00613663 rno-miR-17-5p miRNA MIMAT0000786 Dcaf8 mRNA 364050 Prediction 0.2202 Dcaf8 RAID00647755 rno-miR-340-5p miRNA MIMAT0004650 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID00796241 rno-miR-291a-3p miRNA MIMAT0000895 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID00988036 rno-miR-33-5p miRNA MIMAT0000812 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID01194737 rno-miR-92b-3p miRNA MIMAT0005340 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID01339549 rno-miR-30d-5p miRNA MIMAT0000807 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID01363886 rno-miR-291b miRNA MIMAT0017822 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID01509737 rno-miR-30e-5p miRNA MIMAT0000805 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID01633167 rno-miR-495 miRNA MIMAT0005320 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID01886220 rno-miR-185-5p miRNA MIMAT0000862 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID01931368 rno-miR-325-3p miRNA MIMAT0004639 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID01932202 rno-miR-106b-5p miRNA MIMAT0000825 Dcaf8 mRNA 364050 Prediction 0.2202 Dcaf8 RAID02051537 rno-miR-125a-3p miRNA MIMAT0004729 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID02514573 rno-miR-376b-3p miRNA MIMAT0003196 Dcaf8 mRNA 364050 Prediction 0.2202 Dcaf8 RAID02659937 rno-miR-410-3p miRNA MIMAT0005311 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID02698774 rno-miR-30a-5p miRNA MIMAT0000808 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID02699425 rno-miR-210-5p miRNA MIMAT0017156 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID02750360 rno-miR-32-5p miRNA MIMAT0000811 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID02858116 rno-miR-30b-5p miRNA MIMAT0000806 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID03017809 rno-miR-30c-5p miRNA MIMAT0000804 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID03169877 rno-miR-18a-5p miRNA MIMAT0000787 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID03517448 rno-miR-137-3p miRNA MIMAT0000843 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID03645123 rno-miR-3541 miRNA MIMAT0017795 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID03718885 rno-miR-22-3p miRNA MIMAT0000791 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID03818461 rno-miR-300-5p miRNA MIMAT0004743 Dcaf8 mRNA 364050 Prediction 0.1828 Dcaf8 RAID04012793 rno-miR-20a-5p miRNA MIMAT0000602 Dcaf8 mRNA 364050 Prediction 0.2202