DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000591 rno-miR-343 303478 Ube2z agACCCGUGUGCCUCCCUCu | || | | ||||||| ccUUGG-AGAGAGAGGGAGa 2 19 1294 1312 [rn4:10:84762838-84762856:-] 0.6098 144 7 -19.84 -0.8842 MIMAT0004655 rno-miR-345-3p 303478 Ube2z agAGGUCUGGGGAUCAA-GUCCc |||: |::|: :||| |||| ccUCCGCAUUCUAGGUUACAGGu 2 21 642 664 [rn4:10:84763486-84763508:-] 0.5898 128 0 -21.56 -0.1921 MIMAT0000598 rno-miR-347 303478 Ube2z acCCGCUGGGUCUCCCUGu ||| || |||||||| agGGC-ACAAAGAGGGACc 2 18 1317 1334 [rn4:10:84762816-84762833:-] 0.6098 155 7 -27.70 -0.3663 MIMAT0000598 rno-miR-347 303478 Ube2z acCCGCU-GGGUC-UCCCUGu || || ::||| |||||| guGGAGAUUUCAGAAGGGACc 2 18 1423 1443 [rn4:10:84762707-84762727:-] 0.6098 124 6 -20.93 -0.1647 MIMAT0000599 rno-miR-349 303478 Ube2z ucucCAAUUCUGUCGUCCCGAc || || ||||||||| uucaGUCUUGA-AGCAGGGCUu 2 19 443 463 [rn4:10:84763687-84763707:-] 0.5898 152 7 -18.10 -0.1666 MIMAT0000599 rno-miR-349 303478 Ube2z ucuccaaUUCUGUC--GUCCCGAc :|| :|| ||||||| auucccaGAGCUAGUCCAGGGCUg 2 16 1466 1489 [rn4:10:84762661-84762684:-] 0.6098 146 7 -21.13 -0.1373 MIMAT0004708 rno-miR-9* 303478 Ube2z ugaaaGCCAAUAGAUCGAAAUa :| | | : ||||||| gcugcUGAUCAGUAAGCUUUAc 2 18 586 607 [rn4:10:84763543-84763564:-] 0.5898 145 7 -8.96 -0.1436 MIMAT0004711 rno-miR-21* 303478 Ube2z cuGUCGGGUAG--CUGACGACAAc || |: || | :||||||| uuCACACUUUCAGGUUUGCUGUUc 2 21 1141 1164 [rn4:10:84762986-84763009:-] 0.5331 147 7 -13.98 -0.2747 MIMAT0004739 rno-miR-204* 303478 Ube2z uugcAGGGA-AACGGAAGGGUCg ||||| || | ||||||| aauuUCCCUCUUCCAUUCCCAGa 2 19 1452 1474 [rn4:10:84762676-84762698:-] 0.6098 165 7 -23.58 -0.6180 MIMAT0004739 rno-miR-204* 303478 Ube2z uugcagggaaacggAAGGGUCg ||||||| acugauuugaaaggUUCCCAGc 2 9 750 771 [rn4:10:84763379-84763400:-] 0.5653 140 7 -17.21 -0.1030 MIMAT0003115 rno-miR-207 303478 Ube2z uucccuccUCUCGGUCCUCUUCg ||:| :|||||||| agcuaauuAGGGAUAGGAGAAGa 2 16 305 327 [rn4:10:84763823-84763845:-] 0.5898 159 7 -21.43 -0.8405 MIMAT0003121 rno-miR-483 303478 Ube2z uguucugcccuccccUCCUCAcu |||||| aggaaauauaugcacAGGAGUca 3 9 1635 1657 [rn4:10:84762493-84762515:-] 0.6098 120 0 -8.00 -0.1334 MIMAT0003124 rno-miR-412 303478 Ube2z ugccGAUCACCUGGUCCA-CUUCa |||| | ||||| |||| cauuCUAG-GUUACAGGUAGAAGg 2 20 648 670 [rn4:10:84763480-84763502:-] 0.5898 121 0 -18.70 -0.1120 MIMAT0003174 rno-miR-540 303478 Ube2z gguccuagcuggAGACUGGa ||||||| ggcuguucccaaUCUGACCu 2 9 158 177 [rn4:10:84763973-84763992:-] 0.5898 140 7 -16.00 -0.2050 MIMAT0003378 rno-miR-378* 303478 Ube2z uguguccUGGACCU-CAGUCCUc :| |||: ||||||| gaagccuGCAUGGGUGUCAGGAa 2 16 703 725 [rn4:10:84763425-84763447:-] 0.5653 150 7 -17.39 -0.2892 MIMAT0005279 rno-miR-466c 303478 Ube2z guacAUGUACGUGUG-UAGUGu |:::| | ||| ||||| ucacUGUGUCCCCACAAUCACu 2 18 731 752 [rn4:10:84763398-84763419:-] 0.5653 121 0 -13.32 -0.2595 MIMAT0005323 rno-miR-532-3p 303478 Ube2z acGUUCGGAACCCACACCCUCc ||| || ||||||||||| cuCAAUCCCAGGGUGUGGGAGu 2 21 134 155 [rn4:10:84763995-84764016:-] 0.5898 176 7 -29.66 -0.1040 MIMAT0012854 rno-miR-764 303478 Ube2z uccuccUGUACACUCGUGg :|| ||||||| uaccuaGCACCUGAGCACc 2 14 605 623 [rn4:10:84763527-84763545:-] 0.5898 145 7 -15.63 -0.1614 MIMAT0000560 rno-miR-326 303478 Ube2z ugaccuccuucccGGGUCUCc ||||||| ucccucuuccauuCCCAGAGc 2 9 1456 1476 [rn4:10:84762674-84762694:-] 0.6098 140 7 -13.30 -0.4883 MIMAT0000564 rno-miR-328 303478 Ube2z ugccuucccgucucUCCCGGUc ||||||| acacaccucucugcAGGGCCAg 2 9 285 306 [rn4:10:84763844-84763865:-] 0.5898 140 7 -16.79 -0.1404 MIMAT0000564 rno-miR-328 303478 Ube2z ugcCUUCC-CGUCUCUCCCG-GUc ||:|| | | | ||||| || agaGAGGGAGAAAAUAGGGCACAa 2 20 1302 1325 [rn4:10:84762825-84762848:-] 0.6098 122 0 -18.47 -0.8206 MIMAT0000566 rno-miR-329 303478 Ube2z uuUUUCCAAUCGA--CCCAC-ACAa ::|| ||:| | ||||| ||| ugGGAGUUUGGGUGGGGGUGCUGUc 2 21 380 404 [rn4:10:84763746-84763770:-] 0.5898 123 0 -18.00 -0.1000 MIMAT0004641 rno-miR-330 303478 Ube2z cggauucuguGUCCGGGUCUCu || ||||||| uucccucuucCAUUCCCAGAGc 2 13 1455 1476 [rn4:10:84762674-84762695:-] 0.6098 144 7 -17.97 -0.4815 MIMAT0000583 rno-miR-339-5p 303478 Ube2z gcacucgaggaccuCCUGUCCCu |||||||| gaaagcagagaacuGGACAGGGa 2 10 1348 1370 [rn4:10:84762780-84762802:-] 0.6098 145 7 -23.69 -0.4263 MIMAT0000615 rno-miR-101b 303478 Ube2z aagUCGAUAGUGUCA-UGACAu | :||| |:||| ||||| cuaAUUUAU-AUAGUCACUGUu 2 19 526 546 [rn4:10:84763604-84763624:-] 0.5898 124 0 -11.79 -0.6081 MIMAT0000781 rno-miR-9 303478 Ube2z aguaugucGAUCUAU-UGGUUUCu ||||| | ||||||| ucacuguuCUAGACAGACCAAAGa 2 16 539 562 [rn4:10:84763588-84763611:-] 0.5898 158 7 -17.97 -0.2301 MIMAT0000787 rno-miR-18a 303478 Ube2z gaUAGA-CGUGAUCUACGUGGAAu | || |||| || ||||||| uuACCUAGCACCUGA-GCACCUUc 2 22 604 626 [rn4:10:84763524-84763546:-] 0.5898 158 7 -19.69 -0.2200 MIMAT0000791 rno-miR-22 303478 Ube2z ugUCAAGAAGU--UGACCGUCGAa :|||| || || ||||||| aaGGUUC-CCAGCACAGGCAGCUg 2 21 760 782 [rn4:10:84763368-84763390:-] 0.5653 153 7 -19.42 -0.1215 MIMAT0000794 rno-miR-24 303478 Ube2z gacaaGGACGA-CUUGACUCGGu || ||| |:|||||||| guaagCCAGCUGGGACUGAGCCc 2 18 670 692 [rn4:10:84763458-84763480:-] 0.5898 164 7 -24.82 -0.1030 MIMAT0000800 rno-miR-28 303478 Ube2z gaguuaUCUGACA-CUC-GAGGAa :|||| | ||| ||||| uggcugGGACUCUGGAGACUCCUc 2 17 1002 1025 [rn4:10:84763125-84763148:-] 0.5653 123 0 -17.60 -0.1337 MIMAT0000801 rno-miR-29b 303478 Ube2z uuguGACUAAAGUUUACCACGAu |||| || ||||||| caauCUGACCUC-CUUGGUGCUg 2 20 167 188 [rn4:10:84763962-84763983:-] 0.5898 149 7 -18.93 -0.1114 MIMAT0000802 rno-miR-29a 303478 Ube2z auuGGCUAAAGUCUACCACGAu |:|| || ||||||| aauCUGACCUC-CUUGGUGCUg 2 20 168 188 [rn4:10:84763962-84763982:-] 0.5898 145 7 -18.28 -0.1114 MIMAT0000803 rno-miR-29c 303478 Ube2z auuGGCUAAAGUUUACCACGAu |:|| || ||||||| aauCUGACCUC-CUUGGUGCUg 2 20 168 188 [rn4:10:84763962-84763982:-] 0.5898 145 7 -18.28 -0.1114 MIMAT0000823 rno-miR-101a 303478 Ube2z aagUCAAUAGUGUCA-UGACAu | |||| |:||| ||||| cuaAUUUAU-AUAGUCACUGUu 2 19 526 546 [rn4:10:84763604-84763624:-] 0.5898 128 0 -11.79 -0.6008 MIMAT0000834 rno-miR-128 303478 Ube2z uuUCUCUGGCCAAGUGACACu ||: | | | |||||||| ucAGGAAGCUGCUCACUGUGu 2 20 719 739 [rn4:10:84763411-84763431:-] 0.5653 159 7 -19.79 -0.1869 MIMAT0000837 rno-miR-130b 303478 Ube2z uacGGGAAAGUAGUAAC-GUGAc :| || | || ||| |||| uuaUCGUUCCCUCUUUGUCACUg 2 20 1029 1051 [rn4:10:84763099-84763121:-] 0.5492 123 0 -14.03 -0.2310 MIMAT0000842 rno-miR-136 303478 Ube2z agguagUAGUUUUGUUUACCUCa | | :| :||||||| uguccaACCCUGAGGAAUGGAGa 2 18 1216 1238 [rn4:10:84762912-84762934:-] 0.5331 145 7 -15.92 -0.1560 MIMAT0000846 rno-miR-141 303478 Ube2z ggUAGAAAUGGUCUGUCACAAu :||| |: : ||||||| ugGUCUGUG-GGUCCAGUGUUg 2 21 1500 1520 [rn4:10:84762630-84762650:-] 0.6098 142 7 -14.45 -0.2387 MIMAT0000851 rno-miR-145 303478 Ube2z ucccuaaggaccCUUUUGACCUg ||:||||||| gggcagaaagcaGAGAACUGGAc 2 12 1343 1365 [rn4:10:84762785-84762807:-] 0.6098 151 7 -20.66 -0.1398 MIMAT0000874 rno-miR-200a 303478 Ube2z uguAGCA-AUGGUC-UGUCACAAu | || |:: :| ||||||| cuuUGGUCUGUGGGUCCAGUGUUg 2 20 1497 1520 [rn4:10:84762630-84762653:-] 0.6098 141 7 -13.14 -0.2387 MIMAT0000889 rno-miR-219-5p 303478 Ube2z ucUUAACGCAAACCUGUUAGu | || | | ||||||| ccACUUUCAAGU-GACAAUCu 2 20 1542 1561 [rn4:10:84762589-84762608:-] 0.6098 141 7 -8.64 -0.4360 MIMAT0001534 rno-miR-448 303478 Ube2z uacccuguaggaUGUAUACGUu |:||||||| uaaguugaggaaAUAUAUGCAc 2 11 1628 1649 [rn4:10:84762501-84762522:-] 0.6098 146 7 -11.21 -0.4259 MIMAT0003119 rno-miR-224 303478 Ube2z auUUGCCUUGGUGAUCACU-GAAc ||: |:|:|| ||||| ||| ugAAUUUAGCUAC-AGUGAUCUUc 2 22 1067 1089 [rn4:10:84763061-84763083:-] 0.5331 127 0 -14.86 -0.2259 MIMAT0003176 rno-miR-539 303478 Ube2z uguguGGUUC-CUAUUA-AAGAGg :|||| || ||| ||||| cacuuUCAAGUGACAAUCUUCUCc 2 18 1543 1566 [rn4:10:84762584-84762607:-] 0.6098 128 0 -19.00 -0.3759 MIMAT0003213 rno-miR-503 303478 Ube2z gacgucAUGACAAGGGCGACGAu |:| | ||||||||| acuaccUGCCCUGCCCGCUGCUa 2 18 1239 1261 [rn4:10:84762889-84762911:-] 0.5331 157 7 -27.72 -0.2250 MIMAT0003379 rno-miR-378 303478 Ube2z ggAAGACUGAGGUUCAGGUCa ||| | | ||||||| caUUCCCAGAGCUAGUCCAGg 2 20 1465 1485 [rn4:10:84762665-84762685:-] 0.6098 147 7 -14.61 -0.1205

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101588 Ube2z Rattus norvegicus 303478

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ube2z RAID00022912 rno-miR-743b-3p miRNA MIMAT0005280 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00032062 rno-miR-495 miRNA MIMAT0005320 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00032503 rno-miR-136-5p miRNA MIMAT0000842 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00079275 rno-miR-378a-3p miRNA MIMAT0003379 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00096687 rno-miR-328b-3p miRNA MIMAT0017904 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00125669 rno-miR-3084b-3p miRNA MIMAT0035742 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00322020 rno-miR-325-3p miRNA MIMAT0004639 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00587042 rno-miR-224-5p miRNA MIMAT0003119 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00612574 rno-miR-540-3p miRNA MIMAT0003174 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00647049 rno-miR-347 miRNA MIMAT0000598 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00747106 rno-miR-24-3p miRNA MIMAT0000794 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00751338 rno-miR-145-5p miRNA MIMAT0000851 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00795208 rno-miR-349 miRNA MIMAT0000599 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00944605 rno-miR-344g miRNA MIMAT0025052 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID00986902 rno-miR-29b-3p miRNA MIMAT0000801 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01014942 rno-let-7a-2-3p miRNA MIMAT0017086 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01019821 rno-miR-6326 miRNA MIMAT0025065 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01065053 rno-miR-764-5p miRNA MIMAT0012854 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01098861 rno-miR-18a-3p miRNA MIMAT0017095 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01163004 rno-miR-32-5p miRNA MIMAT0000811 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID01266457 rno-miR-128-3p miRNA MIMAT0000834 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID01365765 rno-miR-29c-3p miRNA MIMAT0000803 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01465496 rno-miR-532-3p miRNA MIMAT0005323 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01616847 rno-miR-18a-5p miRNA MIMAT0000787 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID01618685 rno-miR-28-5p miRNA MIMAT0000800 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01671834 rno-miR-126b miRNA MIMAT0017843 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01715592 rno-miR-9a-3p miRNA MIMAT0004708 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01750483 rno-miR-101b-3p miRNA MIMAT0000615 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01856695 rno-miR-201-3p miRNA MIMAT0017364 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01914537 rno-miR-137-3p miRNA MIMAT0000843 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID01914943 rno-miR-326-3p miRNA MIMAT0000560 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID01959796 rno-miR-101a-3p miRNA MIMAT0000823 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02020645 rno-miR-873-3p miRNA MIMAT0017318 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02042638 rno-miR-219a-5p miRNA MIMAT0000889 Ube2z mRNA 303478 Prediction 0.2381 Ube2z RAID02081609 rno-miR-3549 miRNA MIMAT0017807 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02150975 rno-miR-141-3p miRNA MIMAT0000846 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02157391 rno-miR-22-3p miRNA MIMAT0000791 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02198285 rno-miR-330-5p miRNA MIMAT0004641 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID02221374 rno-miR-343 miRNA MIMAT0000591 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02289224 rno-miR-130b-3p miRNA MIMAT0000837 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02420797 rno-miR-3084d miRNA MIMAT0035745 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02498514 rno-miR-3559-5p miRNA MIMAT0017827 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02577311 rno-miR-7578 miRNA MIMAT0029579 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02646789 rno-miR-103-2-5p miRNA MIMAT0017113 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02655118 rno-miR-3586-5p miRNA MIMAT0017880 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02685503 rno-miR-3557-5p miRNA MIMAT0017819 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02813424 rno-miR-3561-3p miRNA MIMAT0017831 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02836223 rno-miR-29a-3p miRNA MIMAT0000802 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02895096 rno-miR-200a-3p miRNA MIMAT0000874 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID02941566 rno-miR-329-3p miRNA MIMAT0000566 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03096687 rno-miR-25-3p miRNA MIMAT0000795 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID03097694 rno-miR-92a-3p miRNA MIMAT0000816 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID03129149 rno-miR-340-5p miRNA MIMAT0004650 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03288388 rno-let-7g-3p miRNA MIMAT0035720 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03300569 rno-miR-9a-5p miRNA MIMAT0000781 Ube2z mRNA 303478 Prediction 0.2381 Ube2z RAID03337846 rno-miR-3544 miRNA MIMAT0017798 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03495199 rno-miR-363-3p miRNA MIMAT0003210 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID03561903 rno-miR-365-5p miRNA MIMAT0017184 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03602134 rno-miR-1247-3p miRNA MIMAT0035722 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03619416 rno-miR-503-5p miRNA MIMAT0003213 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03633785 rno-miR-339-5p miRNA MIMAT0000583 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03654280 rno-miR-3564 miRNA MIMAT0017837 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03705411 rno-miR-92b-3p miRNA MIMAT0005340 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID03707242 rno-miR-448-3p miRNA MIMAT0001534 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03833438 rno-miR-361-3p miRNA MIMAT0017199 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03853203 rno-miR-3084a-3p miRNA MIMAT0035740 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03855001 rno-miR-539-5p miRNA MIMAT0003176 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03875794 rno-miR-328a-3p miRNA MIMAT0000564 Ube2z mRNA 303478 Prediction 0.2202 Ube2z RAID03909176 rno-miR-344b-5p miRNA MIMAT0017811 Ube2z mRNA 303478 Prediction 0.1828 Ube2z RAID03919271 rno-miR-216b-3p miRNA MIMAT0017847 Ube2z mRNA 303478 Prediction 0.1828