DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000563 rno-let-7d* 286761 Vcpip1 ucuuuccgucguccaGCAUAUc |||||| auuaaaaaucuuguaCGUAUAu 2 8 82 103 [rn4:5:9114937-9114958:+] 0.7572 120 6 -7.10 -0.3700 MIMAT0000568 rno-miR-330* 286761 Vcpip1 agagaCGUCCGGGACACGA-AACg || |::|| |||| ||| guaugGCUAGUUCUAUGCUCUUGu 2 19 624 647 [rn4:5:9115479-9115502:+] 0.6098 122 0 -14.74 -0.9197 MIMAT0000574 rno-miR-140* 286761 Vcpip1 ggcaccaagaugggACACCAu |||||| guuuauuccauguaUGUGGUu 2 8 229 249 [rn4:5:9115084-9115104:+] 0.7572 120 6 -12.94 -0.1328 MIMAT0000576 rno-miR-336 286761 Vcpip1 ucuGAUCU---AUACCUUCCCAcu :|||| | || |||||| aguUUAGAUCUUUUGAAAGGGUuu 3 19 209 232 [rn4:5:9115064-9115087:+] 0.7572 133 0 -14.55 -0.2149 MIMAT0004646 rno-miR-338* 286761 Vcpip1 gugagucgugguccuAUAACAa |||||| auaaaggcagauguuUAUUGUg 2 8 17 38 [rn4:5:9114872-9114893:+] 0.7572 120 6 -7.29 -0.1077 MIMAT0000592 rno-miR-344-3p 286761 Vcpip1 ugccaguccgAAACCGAUCUAGu || | :|||||| uucuuguaaaUUAGUUUAGAUCu 2 14 197 219 [rn4:5:9115052-9115074:+] 0.7572 133 6 -7.50 -0.1587 MIMAT0000604 rno-miR-350 286761 Vcpip1 cacUUUCACAUACCCGAAACACUu ||:| ||| : |||||| auaAAGGCAGAUGUUUAUUGUGAa 2 22 17 40 [rn4:5:9114872-9114895:+] 0.7572 125 6 -11.64 -0.4100 MIMAT0000607 rno-miR-7a* 286761 Vcpip1 uaccgucugacacUAAACAACa |||||||| gugaauauguaauAUUUGUUGg 2 10 36 57 [rn4:5:9114891-9114912:+] 0.7572 145 7 -9.30 -0.7601 MIMAT0000607 rno-miR-7a* 286761 Vcpip1 uaCCG-UC-UGACACUA-AACAACa ||| || || || | |||||| auGGCUAGUUCUAUGCUCUUGUUGa 2 21 626 650 [rn4:5:9115481-9115505:+] 0.6098 122 6 -15.26 -1.1529 MIMAT0000610 rno-miR-352 286761 Vcpip1 augauacguUGGA--UGAUGAGa ||:| ||||||: acauaaaauACUUUGACUACUUa 2 13 452 474 [rn4:5:9115307-9115329:+] 0.6098 127 0 -10.06 -0.2293 MIMAT0004706 rno-let-7e* 286761 Vcpip1 ccuuucgauccuccgGCAUAUc |||||| auuaaaaaucuuguaCGUAUAu 2 8 82 103 [rn4:5:9114937-9114958:+] 0.7572 120 6 -5.68 -0.3612 MIMAT0004708 rno-miR-9* 286761 Vcpip1 ugaaagccaauagaUCGAAAUa ||||||| uuccuccuccaagcAGCUUUAu 2 9 1035 1056 [rn4:5:9115890-9115911:+] 0.6098 140 7 -7.96 -0.3489 MIMAT0004708 rno-miR-9* 286761 Vcpip1 ugaAAGCCAAUAG--AUCGAAAua | :| ||: | ||||||| gugUGUGAUUGGCAAUAGCUUUua 3 20 145 168 [rn4:5:9115000-9115023:+] 0.7572 130 0 -10.90 -0.1532 MIMAT0003152 rno-miR-22* 286761 Vcpip1 auUUCGAACGGUGACUU-CUUGa ||| ||| :|||| |||| uuAAG-UUGAAUUUGAAUGAACg 2 21 1175 1196 [rn4:5:9116030-9116051:+] 0.6098 122 0 -12.29 -0.8931 MIMAT0004715 rno-miR-27a* 286761 Vcpip1 acgaGUGUUCGUCGAUUCGGGa :| | |:: |||||||| augcUAAAUGUGUCUAAGCCCc 2 19 867 888 [rn4:5:9115722-9115743:+] 0.6098 154 7 -19.99 -0.6611 MIMAT0004720 rno-miR-30e* 286761 Vcpip1 cgacauuuGUAGGCUGACUUUc |:|:: ||||||| ucuuccuuCGUUU-ACUGAAAu 2 15 1155 1175 [rn4:5:9116010-9116030:+] 0.6098 144 7 -10.60 -1.0733 MIMAT0004720 rno-miR-30e* 286761 Vcpip1 cgacAUUUGUAGGCUG-ACUUUc ||| : || ||| ||||| gucuUAAUUUUCAGACAUGAAAa 2 19 286 308 [rn4:5:9115141-9115163:+] 0.6098 126 0 -8.85 -1.0189 MIMAT0004722 rno-miR-30d* 286761 Vcpip1 cgucguuuGUAGACUGACUUUc |:|:| ||||||| ucuuccuuCGUUU-ACUGAAAu 2 15 1155 1175 [rn4:5:9116010-9116030:+] 0.6098 148 7 -10.39 -1.0733 MIMAT0004722 rno-miR-30d* 286761 Vcpip1 cgucGUUUGUAGACUG-ACUUUc :|| : || ||| ||||| gucuUAAUUUUCAGACAUGAAAa 2 19 286 308 [rn4:5:9115141-9115163:+] 0.6098 122 0 -8.45 -1.0189 MIMAT0000809 rno-miR-30a* 286761 Vcpip1 cgacguuuGUAGGCUGACUUUc |:|:: ||||||| ucuuccuuCGUUU-ACUGAAAu 2 15 1155 1175 [rn4:5:9116010-9116030:+] 0.6098 144 7 -10.76 -1.0733 MIMAT0000809 rno-miR-30a* 286761 Vcpip1 cgacGUUUGUAGGCUG-ACUUUc :|| : || ||| ||||| gucuUAAUUUUCAGACAUGAAAa 2 19 286 308 [rn4:5:9115141-9115163:+] 0.6098 122 0 -8.75 -1.0189 MIMAT0000831 rno-miR-126* 286761 Vcpip1 gcgcauGGUUUUC-AUUAUUac ::|:|:| |||||| uuuaauUUAGAGGCUAAUAAag 3 16 1 22 [rn4:5:9114856-9114877:+] 0.7572 130 0 -7.14 -0.1459 MIMAT0004734 rno-miR-138* 286761 Vcpip1 gggaccacaacACUUCAUCGGc | :|||||:| ggccacauaacUUGAGUAGUCa 2 12 61 82 [rn4:5:9114916-9114937:+] 0.7572 127 0 -11.03 -0.1210 MIMAT0004737 rno-miR-196a* 286761 Vcpip1 aguccgucaaagaACAACGGcu ||||||| cuuguugauaauaUGUUGCCau 3 10 643 664 [rn4:5:9115498-9115519:+] 0.6098 125 0 -9.55 -0.1356 MIMAT0004738 rno-miR-199a-3p 286761 Vcpip1 auuggUUACACGUCUGAUGAca ||| : ||||||| cauaaAAUACUUUGACUACUua 3 18 453 474 [rn4:5:9115308-9115329:+] 0.6098 129 0 -8.28 -0.2272 MIMAT0005446 rno-miR-219-2-3p 286761 Vcpip1 ugucuACAGGUCGGUGUUAAGa ||| |: :|:||||| aaucuUGUACGUAUAUAAUUCa 2 18 88 109 [rn4:5:9114943-9114964:+] 0.7572 137 0 -9.04 -0.1454 MIMAT0000893 rno-miR-290 286761 Vcpip1 uuuUUCACGGGGGUAUC-AAACUc :| || :: :|||| ||||| uauGAAUGGUUAUAUAGUUUUGAc 2 21 821 844 [rn4:5:9115676-9115699:+] 0.6098 124 0 -9.22 -0.7609 MIMAT0000894 rno-miR-291a-5p 286761 Vcpip1 ucucucccggagGUGAAACUac :||||||| aaauacauaaaaUACUUUGAcu 3 11 448 469 [rn4:5:9115303-9115324:+] 0.6098 126 0 -9.02 -0.1122 MIMAT0001547 rno-miR-450a 286761 Vcpip1 guaauccuuguguagCGUUUUu |||||| agacagcuauuguugGCAAAAa 2 8 493 514 [rn4:5:9115348-9115369:+] 0.6098 120 6 -7.81 -0.1377 MIMAT0003113 rno-miR-489 286761 Vcpip1 cgacgguauauacacuACAGUAa |||||| uucauugaaaguucuuUGUCAUu 2 8 248 270 [rn4:5:9115103-9115125:+] 0.7572 120 6 -8.65 -0.2458 MIMAT0003115 rno-miR-207 286761 Vcpip1 uuccCUCCUCUCGG-UCCUCUUCg ||| |||:: :||||||| aauuGAGCCGAGUUGGGGAGAAGu 2 20 548 571 [rn4:5:9115403-9115426:+] 0.6098 158 7 -20.22 -0.2361 MIMAT0003162 rno-miR-1* 286761 Vcpip1 cccauguauuucUUCAUACACg | ||||||| aggguuuauuccAUGUAUGUGg 2 11 226 247 [rn4:5:9115081-9115102:+] 0.7572 142 7 -17.36 -1.1056 MIMAT0003162 rno-miR-1* 286761 Vcpip1 cccaugUAUU-UCUUCAUACAcg ||:| | | |||||| gaacgaAUGACAAAUGUAUGUua 3 17 1192 1214 [rn4:5:9116047-9116069:+] 0.6098 131 0 -5.67 -0.3030 MIMAT0003175 rno-miR-543* 286761 Vcpip1 ucuUCACGUGGCGCUUACAAa | | || :| ||||||| uacAUUUCA-UGAGAAUGUUg 2 19 396 415 [rn4:5:9115251-9115270:+] 0.6098 148 7 -8.87 -0.8804 MIMAT0004791 rno-miR-379* 286761 Vcpip1 caaucaccuggUACAAUGUAUc || ||||||| uuauuuuuuaaAUCUUACAUAa 2 12 701 722 [rn4:5:9115556-9115577:+] 0.6098 147 7 -4.12 -1.1715 MIMAT0004791 rno-miR-379* 286761 Vcpip1 caaucaccugguacaAUGUAUc |||||| aaauguaucuuaaaaUACAUAa 2 8 436 457 [rn4:5:9115291-9115312:+] 0.6098 120 6 -8.21 -0.3250 MIMAT0003202 rno-miR-382* 286761 Vcpip1 uucacaacaggcaCUUACUaa |||||| aauuugaaugaacGAAUGAca 3 9 1183 1203 [rn4:5:9116038-9116058:+] 0.6098 120 0 -6.69 -0.1701 MIMAT0003209 rno-miR-363* 286761 Vcpip1 uuuAACGUAGCA---CUAGGUGGGc | || |:|| | ||||||: ucuUGGCCUUGUCAAGUUCCACCUa 2 20 676 700 [rn4:5:9115531-9115555:+] 0.6098 134 0 -14.94 -0.2775 MIMAT0003380 rno-miR-505 286761 Vcpip1 ccuuugGUCGUUCACA-ACUg :||||||||| ||| gcaugaUAGCAAGUGUGUGAu 2 15 133 153 [rn4:5:9114988-9115008:+] 0.7572 130 0 -18.30 -0.6757 MIMAT0005281 rno-miR-871 286761 Vcpip1 acACUGG-CCGUGGUUAGACUUAu || || ||| : : ||||||| gcUGCCCAGGC-UGGCUCUGAAUu 2 22 176 198 [rn4:5:9115031-9115053:+] 0.7572 150 7 -18.60 -0.5686 MIMAT0005286 rno-miR-878 286761 Vcpip1 agaugggUCAUACCACAGUAcg ||| |||||| cauugaaAGUUCUUUGUCAUuu 3 16 250 271 [rn4:5:9115105-9115126:+] 0.7572 123 0 -9.20 -0.1979 MIMAT0005289 rno-miR-881 286761 Vcpip1 agAUAAGUCUUUACGGUGUCAa ||||:|| || |||||| cuUAUUUAGUAA--ACACAGUg 2 21 1058 1077 [rn4:5:9115913-9115932:+] 0.6098 133 6 -14.95 -0.1021 MIMAT0005290 rno-miR-883 286761 Vcpip1 uaUGA-CUCUCUACAAC-GUCAAu |:| |||||: || ||||| gaAUUGGAGAGGAAAUGACAGUUg 2 21 344 367 [rn4:5:9115199-9115222:+] 0.6098 123 0 -17.02 -0.6520 MIMAT0005290 rno-miR-883 286761 Vcpip1 uaugacUCUCUACAAC-GUCAAu | | || ||| ||||| uggcaaAAAUAUUUUGACAGUUg 2 17 506 528 [rn4:5:9115361-9115383:+] 0.6098 120 0 -8.03 -0.8834 MIMAT0005308 rno-miR-380 286761 Vcpip1 gcgUACA-AGAUAC-----CAGUUGGUa |||| |||| | ||||||| uaaAUGUGUCUAAGCCCCUUUCAACCAa 2 20 871 898 [rn4:5:9115726-9115753:+] 0.6098 145 7 -12.27 -1.1958 MIMAT0005315 rno-miR-434 286761 Vcpip1 uccUCAGCU-CA-CUACCAAGUuu | || | || :||||||| uuuAUUCCAUGUAUGUGGUUCAuu 3 20 230 253 [rn4:5:9115085-9115108:+] 0.7572 129 0 -11.73 -0.1159 MIMAT0005321 rno-miR-500 286761 Vcpip1 acuugggaacgggucCACGUAa |||||| auaucuuguuauucaGUGCAUg 2 8 116 137 [rn4:5:9114971-9114992:+] 0.7572 120 6 -15.36 -0.1224 MIMAT0005322 rno-miR-532-5p 286761 Vcpip1 ugucaggauGUGAGUUCCGUac :| | |||||| uuuagaggcUAAUAAAGGCAga 3 14 6 27 [rn4:5:9114861-9114882:+] 0.7572 125 0 -12.53 -0.1908 MIMAT0005329 rno-miR-674-5p 286761 Vcpip1 augUGGUG-AGGGUA--GAGUCACg |::|: ||:::| :|||||| aagAUUAUAUCUUGUUAUUCAGUGc 2 20 110 134 [rn4:5:9114965-9114989:+] 0.7572 133 6 -18.56 -0.2088 MIMAT0005337 rno-miR-760-3p 286761 Vcpip1 agGGGUGUCUGGGUCUCGGc :|::: |: :||||||| agUCUGUUGG-UCAGAGCCa 2 19 605 623 [rn4:5:9115460-9115478:+] 0.6098 144 7 -16.30 -0.5670 MIMAT0005338 rno-miR-770 286761 Vcpip1 gcaccGGGUCUGUGCACCACGa :||| ::|:||||| | uuuauUCCAUGUAUGUGGUUCa 2 18 230 251 [rn4:5:9115085-9115106:+] 0.7572 129 0 -16.31 -0.1148 MIMAT0012824 rno-miR-513 286761 Vcpip1 uacUUUCUGU---GGAAGAACACUu ||||:|| :|| |||||| aauAAAGGCAGAUGUUUAUUGUGAa 2 20 16 40 [rn4:5:9114871-9114895:+] 0.7572 130 6 -16.47 -0.4100 MIMAT0012826 rno-miR-220 286761 Vcpip1 ucCAGAGACUGUG---ACACCAcc ||:| | ||: |||||| ggGUUUAUUCCAUGUAUGUGGUuc 3 20 227 250 [rn4:5:9115082-9115105:+] 0.7572 126 0 -13.98 -0.2192 MIMAT0012829 rno-miR-511 286761 Vcpip1 acUCACGUCUC--GU--UUUCCGUa | | :|||| :| ||||||| uuAAUUUAGAGGCUAAUAAAGGCAg 2 20 2 26 [rn4:5:9114857-9114881:+] 0.7572 145 7 -14.26 -1.0774 MIMAT0012837 rno-miR-632 286761 Vcpip1 aggccguccuuuGUCUGUg |||||| agucuuaauuuuCAGACAu 2 8 285 303 [rn4:5:9115140-9115158:+] 0.6098 120 6 -9.67 -0.1169 MIMAT0012838 rno-miR-653 286761 Vcpip1 gucaucucuuacAAAGUUGug ||||||| ugucuaagccccUUUCAACca 3 10 877 897 [rn4:5:9115732-9115752:+] 0.6098 125 0 -7.26 -0.1323 MIMAT0012839 rno-miR-668 286761 Vcpip1 ccAUCACCCGGCUCGG--CUCACUGu || | | | ||:: ||||||| aaUAUUUUGAC-AGUUGAGAGUGACa 2 23 513 537 [rn4:5:9115368-9115392:+] 0.6098 143 7 -17.11 -1.0703 MIMAT0012846 rno-miR-201 286761 Vcpip1 uucuuguuacgGAAUGACUca :||||||| aucuuccuucgUUUACUGAaa 3 11 1154 1174 [rn4:5:9116009-9116029:+] 0.6098 126 0 -7.99 -0.1321 MIMAT0012848 rno-miR-294 286761 Vcpip1 ucuaucccggagGUAAAACUc :||||||| uguuggcaaaaaUAUUUUGAc 2 10 503 523 [rn4:5:9115358-9115378:+] 0.6098 141 7 -10.33 -0.8514 MIMAT0012848 rno-miR-294 286761 Vcpip1 ucuaucccggagguAAAACUc |||||| aauuaguuuagaucUUUUGAa 2 8 205 225 [rn4:5:9115060-9115080:+] 0.7572 120 6 -4.79 -0.2549 MIMAT0012850 rno-miR-465 286761 Vcpip1 guguggucguggcaaGAUUUAu |||||| augaaaauucucuugCUAAAUa 2 8 302 323 [rn4:5:9115157-9115178:+] 0.6098 120 6 -6.83 -0.1549 MIMAT0000564 rno-miR-328 286761 Vcpip1 ugccuucccgucucuCCCGGUc |||||| uaauauuuguuggcuGGGCCAc 2 8 45 66 [rn4:5:9114900-9114921:+] 0.7572 120 6 -14.22 -0.1189 MIMAT0000566 rno-miR-329 286761 Vcpip1 uuuuuccaaucgaccCACACAa |||||| agugcaugauagcaaGUGUGUg 2 8 130 151 [rn4:5:9114985-9115006:+] 0.7572 120 6 -10.92 -0.1235 MIMAT0000575 rno-miR-335 286761 Vcpip1 ugUAAAAAGCAAUA-ACGAGAACu || | ||| | |||||||| guAUGGCUAGUUCUAUGCUCUUGu 2 22 624 647 [rn4:5:9115479-9115502:+] 0.6098 156 7 -14.45 -1.0338 MIMAT0000575 rno-miR-335 286761 Vcpip1 uguaaaaagcaauaacGAGAACu |||||| uucagacaugaaaauuCUCUUGc 2 8 295 317 [rn4:5:9115150-9115172:+] 0.6098 120 6 -9.18 -0.1658 MIMAT0000596 rno-miR-346 286761 Vcpip1 ucuccgUCCG--UGAGUCCGUCUGu |||| |: |||||||: auuuagAGGCUAAUAAAGGCAGAUg 2 18 5 29 [rn4:5:9114860-9114884:+] 0.7572 136 0 -23.43 -0.1718 MIMAT0000600 rno-miR-129 286761 Vcpip1 cguUCGG-GUCUGGCGUUUUUc |||: : | : ||||||| gacAGCUAUUGUUGGCAAAAAu 2 19 494 515 [rn4:5:9115349-9115370:+] 0.6098 145 7 -9.50 -0.7391 MIMAT0000602 rno-miR-20a 286761 Vcpip1 gauGGACGUGAUAUUCGU-GAAAu ||| | || ||||| |||| uuuCCU-C-CUCCAAGCAGCUUUa 2 21 1034 1055 [rn4:5:9115889-9115910:+] 0.6098 120 0 -14.75 -0.7354 MIMAT0000781 rno-miR-9 286761 Vcpip1 aguaugucgaucuaUUGGUUUcu ||||||| ucuaagccccuuucAACCAAAaa 3 10 879 901 [rn4:5:9115734-9115756:+] 0.6098 125 0 -6.90 -0.1055 MIMAT0000786 rno-miR-17-5p 286761 Vcpip1 gauGGACGUGACAUUCGU-GAAAc ||| | || ||||| |||| uuuCCU-C-CUCCAAGCAGCUUUa 2 21 1034 1055 [rn4:5:9115889-9115910:+] 0.6098 120 0 -12.23 -0.7391 MIMAT0000788 rno-miR-19b 286761 Vcpip1 agucaaAACGUACCUAAAC-GUGu || :|| | |||| ||| gaauggUUAUAUAGUUUUGACACa 2 18 824 847 [rn4:5:9115679-9115702:+] 0.6098 121 0 -10.70 -0.8706 MIMAT0000789 rno-miR-19a 286761 Vcpip1 agucaaAACGUAUCUAAAC-GUGu || :|||| |||| ||| gaauggUUAUAUAGUUUUGACACa 2 18 824 847 [rn4:5:9115679-9115702:+] 0.6098 129 0 -12.94 -0.8706 MIMAT0000796 rno-miR-26a 286761 Vcpip1 ucggauaggaccuaaUGAACUu |||||| uggcugggccacauaACUUGAg 2 8 55 76 [rn4:5:9114910-9114931:+] 0.7572 120 6 -13.89 -0.1824 MIMAT0000797 rno-miR-26b 286761 Vcpip1 uggauaggacuuaaUGAACUu |||||| ggcugggccacauaACUUGAg 2 8 56 76 [rn4:5:9114911-9114931:+] 0.7572 120 6 -12.84 -0.1824 MIMAT0000798 rno-miR-27b 286761 Vcpip1 cgUCUUGAAUCGGUGACACUu :| | |: ::|:||||| aaGGCAGAUGUUUAUUGUGAa 2 20 20 40 [rn4:5:9114875-9114895:+] 0.7572 131 0 -18.03 -0.1005 MIMAT0000799 rno-miR-27a 286761 Vcpip1 cgCCUUGAAUCGGUGACACUu || | |: ::|:||||| aaGGCAGAUGUUUAUUGUGAa 2 20 20 40 [rn4:5:9114875-9114895:+] 0.7572 135 0 -13.71 -0.1005 MIMAT0000804 rno-miR-30c 286761 Vcpip1 cgacUCUCACAUCCUACAAAUGu | || | | ||||||||: uaauAAAG-GCA-GAUGUUUAUu 2 20 15 35 [rn4:5:9114870-9114890:+] 0.7572 135 0 -9.21 -0.1559 MIMAT0000805 rno-miR-30e 286761 Vcpip1 gaaGGUCAGUUC---CUACAAAUGu |:| | ||| ||||||||: aggCUAAUAAAGGCAGAUGUUUAUu 2 20 11 35 [rn4:5:9114866-9114890:+] 0.7572 142 0 -12.31 -0.1515 MIMAT0000806 rno-miR-30b-5p 286761 Vcpip1 ucgacucacaucCUACAAAUGu ||||||||: cuaauaaaggcaGAUGUUUAUu 2 11 14 35 [rn4:5:9114869-9114890:+] 0.7572 134 0 -9.21 -0.1559 MIMAT0000807 rno-miR-30d 286761 Vcpip1 gaaggucagcccCUACAAAUGu ||||||||: cuaauaaaggcaGAUGUUUAUu 2 11 14 35 [rn4:5:9114869-9114890:+] 0.7572 134 0 -10.84 -0.1529 MIMAT0000808 rno-miR-30a 286761 Vcpip1 gaaggucagcucCUACAAAUGu ||||||||: cuaauaaaggcaGAUGUUUAUu 2 11 14 35 [rn4:5:9114869-9114890:+] 0.7572 134 0 -9.26 -0.1544 MIMAT0000810 rno-miR-31 286761 Vcpip1 gucgauacggucguAGAACGGa ||||||: agacaugaaaauucUCUUGCUa 2 9 298 319 [rn4:5:9115153-9115174:+] 0.6098 124 0 -9.32 -0.1178 MIMAT0000842 rno-miR-136 286761 Vcpip1 aggUAGUAGUUUUGUUUACC-UCa || |:|||| ||||| || agaAUAUUUAAAAAUAAUGGUAGc 2 21 744 767 [rn4:5:9115599-9115622:+] 0.6098 128 0 -9.81 -1.1393 MIMAT0000843 rno-miR-137 286761 Vcpip1 gaUGCGCAUAAGAAUUCGUUAUu | |:||:| || :|||||| gcAAGUGUGUGAUU-GGCAAUAg 2 22 141 162 [rn4:5:9114996-9115017:+] 0.7572 143 6 -15.99 -0.1021 MIMAT0000852 rno-miR-146a 286761 Vcpip1 uuGGGUACCUUAAGUCAAGAGu ::||| ||| ||||||: ggUUCAUUGAA---AGUUCUUu 2 21 246 264 [rn4:5:9115101-9115119:+] 0.7572 136 0 -13.23 -0.1631 MIMAT0000863 rno-miR-186 286761 Vcpip1 ucggguuuucCUCUUAAGAAAc || |:|||||| gugguucauuGAAAGUUCUUUg 2 13 244 265 [rn4:5:9115099-9115120:+] 0.7572 136 6 -15.71 -0.2838 MIMAT0000863 rno-miR-186 286761 Vcpip1 ucGGGUUUUCCU----CUUAAGAAac ||||:: |: |||||||| ugCCCAGGCUGGCUCUGAAUUCUUgu 3 21 178 203 [rn4:5:9115033-9115058:+] 0.7572 131 0 -20.44 -0.1147 MIMAT0000875 rno-miR-200b 286761 Vcpip1 caGUAGUAAUG-GUCCGUC-AUAAu :| |:|||: || ||| |||| uaUAACGUUAUAGAGACAGCUAUUg 2 22 480 504 [rn4:5:9115335-9115359:+] 0.6098 124 0 -13.24 -0.7230 MIMAT0000876 rno-miR-203 286761 Vcpip1 gaUCACCAGGAUUUGUAAAGUg || |||| |||||||| guAGCCAUCCU--ACAUUUCAu 2 21 386 405 [rn4:5:9115241-9115260:+] 0.6098 153 7 -15.66 -0.7282 MIMAT0000877 rno-miR-204 286761 Vcpip1 uccguauccuacugUUUCCCuu |||||| guuuagaucuuuugAAAGGGuu 3 9 210 231 [rn4:5:9115065-9115086:+] 0.7572 120 0 -8.01 -0.1287 MIMAT0000880 rno-miR-208 286761 Vcpip1 uguucgaaaaacgagCAGAAUa |||||| uuuaauuccaugaaaGUCUUAa 2 8 271 292 [rn4:5:9115126-9115147:+] 0.6835 120 6 -7.30 -0.2796 MIMAT0000882 rno-miR-211 286761 Vcpip1 uccguuuccuacugUUUCCCuu |||||| guuuagaucuuuugAAAGGGuu 3 9 210 231 [rn4:5:9115065-9115086:+] 0.7572 120 0 -8.01 -0.1287 MIMAT0000886 rno-miR-216a 286761 Vcpip1 agUGUCAACGGU--CGACUCUAAu ||||| :| |||||||| acACAGUGUAUAUUCCUGAGAUUg 2 21 1070 1093 [rn4:5:9115925-9115948:+] 0.6098 151 7 -22.61 -0.3279 MIMAT0000903 rno-miR-320 286761 Vcpip1 agcGGGAGAGUUGGGUCGAAAa ||: ||| | ||||||| uuuCCUCCUCCAAGCAGCUUUa 2 20 1034 1055 [rn4:5:9115889-9115910:+] 0.6098 159 7 -18.74 -0.7411 MIMAT0001538 rno-miR-429 286761 Vcpip1 ugccGUAAUG-GUCUGUC-AUAAu |:|||: |||||| |||| auaaCGUUAUAGAGACAGCUAUUg 2 19 481 504 [rn4:5:9115336-9115359:+] 0.6098 129 0 -18.23 -0.7230 MIMAT0001549 rno-miR-365 286761 Vcpip1 uauuccuaaaaauccCCGUAAu |||||| uacauaaaagagaauGGCAUUu 2 8 716 737 [rn4:5:9115571-9115592:+] 0.6098 120 6 -6.78 -0.1167 MIMAT0003123 rno-miR-377 286761 Vcpip1 gguuuucAACGGAAACACACUa | || ||||||| ugcaugaUAGCAAGUGUGUGAu 2 16 132 153 [rn4:5:9114987-9115008:+] 0.7572 143 7 -14.18 -0.7341 MIMAT0003193 rno-miR-494 286761 Vcpip1 uccaaagggcacaUACAAAgu |||||| cuaauaaaggcagAUGUUUau 3 9 14 34 [rn4:5:9114869-9114889:+] 0.7572 120 0 -6.57 -0.1920 MIMAT0003199 rno-miR-381 286761 Vcpip1 cucucgaacggGAACAUAu ||||||| uguucuguagaCUUGUAUu 2 9 1113 1131 [rn4:5:9115968-9115986:+] 0.6098 140 7 -10.11 -0.9488 MIMAT0003199 rno-miR-381 286761 Vcpip1 cucUCGA-AC--GGGAACAUau :||| || ::|||||| gcuGGCUCUGAAUUCUUGUAaa 3 17 185 206 [rn4:5:9115040-9115061:+] 0.7572 126 0 -10.85 -0.2412 MIMAT0003199 rno-miR-381 286761 Vcpip1 cucucgaacgGGAACAUau :|||||| ucauuaaaaaUCUUGUAcg 3 10 80 98 [rn4:5:9114935-9114953:+] 0.7572 121 0 -6.63 -0.5457 MIMAT0003200 rno-miR-487b 286761 Vcpip1 ucaccuacUGGGACAUGC-UAa |:|:|||||| || cauuaaaaAUCUUGUACGUAUa 2 14 81 102 [rn4:5:9114936-9114957:+] 0.7572 121 0 -14.37 -1.3151 MIMAT0003208 rno-miR-374 286761 Vcpip1 gugaaucguccaacaUAAUAUa |||||| guauauaauucaaagAUUAUAu 2 8 98 119 [rn4:5:9114953-9114974:+] 0.7572 120 6 -4.04 -0.1440 MIMAT0003381 rno-miR-499 286761 Vcpip1 uuuguAGUGACGUUCAGAAUu || || |||||||| uuaauUCCAUGAAAGUCUUAa 2 17 272 292 [rn4:5:9115127-9115147:+] 0.6098 156 7 -13.53 -1.2173 MIMAT0003381 rno-miR-499 286761 Vcpip1 uuUGUAGUGACGU--UCAG-AAUu |||| ||| | |||| ||| ccACAUAACUUGAGUAGUCAUUAa 2 20 63 86 [rn4:5:9114918-9114941:+] 0.7572 122 0 -11.92 -1.3030 MIMAT0005309 rno-miR-384-5p 286761 Vcpip1 uguaacggaUCC-UUAACAAAUGu ||| |: ||||||: ggcuaauaaAGGCAGAUGUUUAUu 2 15 12 35 [rn4:5:9114867-9114890:+] 0.7572 133 0 -9.79 -0.1544 MIMAT0005311 rno-miR-410 286761 Vcpip1 uguccGGUAGAC--A-CAAUAUAa |::| || | ||||||| uuuauCUGUAUGAAUGGUUAUAUa 2 17 813 836 [rn4:5:9115668-9115691:+] 0.6098 142 7 -11.22 -0.9209 MIMAT0005311 rno-miR-410 286761 Vcpip1 uguccgguagacacAAUAUAa |||||| auauaauucaaagaUUAUAUc 2 8 100 120 [rn4:5:9114955-9114975:+] 0.7572 120 6 -6.13 -0.1258 MIMAT0005314 rno-miR-425 286761 Vcpip1 aguugcccucacuagcACAGUAa |||||| uucauugaaaguucuuUGUCAUu 2 8 248 270 [rn4:5:9115103-9115125:+] 0.7572 120 6 -11.64 -0.2414 MIMAT0005320 rno-miR-495 286761 Vcpip1 uucuucACGUG-GUA-CAAACAAa || |: ||| ||||||| ugaguuUGGAUGCAUAGUUUGUUc 2 17 955 978 [rn4:5:9115810-9115833:+] 0.6098 150 7 -12.82 -0.3299 MIMAT0005320 rno-miR-495 286761 Vcpip1 uuCUUCACGUG-GUACAAACAAa ||| || || |||| |||| acGAA-UG-ACAAAUGUAUGUUa 2 21 1194 1214 [rn4:5:9116049-9116069:+] 0.6098 123 0 -7.96 -0.1131 MIMAT0005335 rno-miR-758 286761 Vcpip1 ccAAUCACCUGGUCCAGU-GUUu ||:|| || |||| ||| agUUGGUACACAUUGUCAUCAAg 2 21 363 385 [rn4:5:9115218-9115240:+] 0.6098 120 0 -15.14 -0.4263 MIMAT0005339 rno-miR-873 286761 Vcpip1 uccucugaguguucAAGGACg |||||| aaacacaguguauaUUCCUGa 2 8 1068 1088 [rn4:5:9115923-9115943:+] 0.6098 120 6 -13.36 -0.1005 MIMAT0005341 rno-miR-488 286761 Vcpip1 cugguucUUUGUCGGAAAGUu ||:| ||||||| ugugucuAAGC-CCCUUUCAa 2 15 875 894 [rn4:5:9115730-9115749:+] 0.6098 144 7 -13.33 -0.7392 MIMAT0005595 rno-miR-146b 286761 Vcpip1 ugUCGGAUACCUUAAGUCAAGAGu :|:: || ||| ||||||: guGGUUCAUUGAA---AGUUCUUu 2 23 244 264 [rn4:5:9115099-9115119:+] 0.7572 134 0 -10.71 -0.1631

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101633 Vcpip1 Rattus norvegicus 286761

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Vcpip1; Vcip135 rno-miR-1 1069 1087 AUGUGUGAAGAAAUGUAAGGU ||||| | ||:||||| AACACAGUG---UAUAUUCCU Vcpip1; Vcip135 rno-miR-1* 130 153 CCCAUGUAUU-UC-UUCAUACACG ||:|||:| || ||||:|||| -AGUGCAUGAUAGCAAGUGUGUGA Vcpip1; Vcip135 rno-miR-103 158 182 AGUAUCGGGAC--AUGUUACGACGA |||||::| ||:| |||||| -AAUAGCUUUUAAUAUACUGCUGCC Vcpip1; Vcip135 rno-miR-107 135 182 -ACUAUCGGG-ACA-------UGUU---------------ACGACGA ||||||| ||| :||| |||||| AUGAUAGCAAGUGUGUGAUUGGCAAUAGCUUUUAAUAUACUGCUGCC Vcpip1; Vcip135 rno-miR-10b 315 339 UGUGUU---UAAGCCAA-GAUGUCCC :| |||:|||| ||:||| -UGCUAAAUAUUUGGUUUCUGCAGA- Vcpip1; Vcip135 rno-miR-128a 8 41 UUUUCUCUGGC------------CAAGUGACACU- ||||:|: |||:|:||||| --UAGAGGCUAAUAAAGGCAGAUGUUUAUUGUGAA Vcpip1; Vcip135 rno-miR-128b 8 41 CUUUCUCUGGC------------CAAGUGACACU- ||||:|: |||:|:||||| --UAGAGGCUAAUAAAGGCAGAUGUUUAUUGUGAA Vcpip1; Vcip135 rno-miR-140* 553 600 ACAGGC---ACCA--------AGAUGGGA-CA-------- CCAU | ||| ||| |||||||| || |||: AG-CCGAGUUGGGGAGAAGUAUCUACCCUAGUAUGAUAAAGUCGGUGU Vcpip1; Vcip135 rno-miR-145 1080 1104 UUCCCUAAGGACCCUUU---UGACCUG- ||||||| || ||||||| ----UAUUCCUGAGAUUGGUACUGGACU Vcpip1; Vcip135 rno-miR-146 618 639 -UUGG--GUACCUUAAGUCAAGAGU |:|| :|||| :|||||| GAGCCAGUAUGGC---UAGUUCUA- Vcpip1; Vcip135 rno-miR-150 548 570 GUGACCAUGUUCCCAACCCUCU- |:|| |:|| |||||| AAUUGAGCCGAGUUG-GGGAGAA Vcpip1; Vcip135 rno-miR-151 594 612 GGAGUUCCUCG--GAGUCAGAUCA || |: ||||||||: -----CGGUGUGACUCAGUCUGU- Vcpip1; Vcip135 rno-miR-18 428 449 AUAGACGUGAUCUACGUGGAAU- ||| |||| |||:|:|||| --CCUGAACUAAAUGUAUCUUAA Vcpip1; Vcip135 rno-miR-183 1004 1034 -GUCACUUAAGAU--------GGUCACGGUAU :|||| |||| || |||||| AUAGUGCAUUCAUUAACUCUUCC-GUGCCAG- Vcpip1; Vcip135 rno-miR-184 1018 1047 -UGGGAAUA----GUCAA--GAGGCAGGU- ||:||| ||||| |||| |||| AACUCUUCCGUGCCAGUUUCCUCC-UCCAA Vcpip1; Vcip135 rno-miR-189 607 632 UGACUA-UAGUCGA-GUCAU-CCGUG ||| :|||| ||||| ||| UCUGUUGGUCAGAGCCAGUAUGGCU- Vcpip1; Vcip135 rno-miR-192 594 620 -CCGAC---AGUUAAGUAUCCAGUC- ||: |||:| ::| |||||| CGGUGUGACUCAGUCUGUUGGUCAGA Vcpip1; Vcip135 rno-miR-193 596 627 GACCCUGA-------AACA--UC-CGGUCAA || |||| ||| || |||||| GUGUGACUCAGUCUGUUGGUCAGAGCCAGUA Vcpip1; Vcip135 rno-miR-19a 956 985 AGUCAAA---ACGUAUCUAAACG----UGU- ||||| ||||||| ||||: ||| -GAGUUUGGAUGCAUAG-UUUGUUCCAACAU Vcpip1; Vcip135 rno-miR-203 386 407 GAUCACCAGGAUUUGUAAAGUG- ||| |||| ||||||||: GUAGCCAUCCU--ACAUUUCAUG Vcpip1; Vcip135 rno-miR-206 370 406 GGUGUGUGA--------------AGGAAUGUAAGGU- ||||: | ||| ||||||:|| ACACAUUGUCAUCAAGGUAGCCAUCC-UACAUUUCAU Vcpip1; Vcip135 rno-miR-207 546 573 UUCCCUCCUCUCGG------UCCUCUUCG- || ||||| :|||||||: ---UGAAUUGAGCCGAGUUGGGGAGAAGUA Vcpip1; Vcip135 rno-miR-216 1070 1095 -GUGUCAACGGUC---GACUCUAAU- ||||| ||: ||||||||: ACACAG-UGUAUAUUCCUGAGAUUGG Vcpip1; Vcip135 rno-miR-24 539 559 GACAAGGACGACUUGACUCGGU- |::| |||||:||||||: ---AUUUUCCUGAAUUGAGCCGA Vcpip1; Vcip135 rno-miR-27b 22 42 -CGUCUUGAAUCGGUGACACUU- ||||| || :|:|||||| GGCAGAUGUU---UAUUGUGAAU Vcpip1; Vcip135 rno-miR-290 564 589 -UUUUUCACGG--GGGUAUCAAACUC :|:|||| ||| |||| ||| GGAGAAGUAUCUACCC-UAGUAUGAU Vcpip1; Vcip135 rno-miR-297 963 988 GUACGUAUGU-ACGUG--UGUAUGUA ||||||| ||: |||||| GAUGCAUAGUUUGUUCCAACAUACC- Vcpip1; Vcip135 rno-miR-327 1018 1049 -UGGGA--GUACGG--------GGAG-UUCC ||:|| |:|||| |||| ||| AACUCUUCCGUGCCAGUUUCCUCCUCCAAGC Vcpip1; Vcip135 rno-miR-331 178 192 AAGAUCCUAUCCGGGUCC--CCG- ||||||| ||| ----------UGCCCAGGCUGGCU Vcpip1; Vcip135 rno-miR-335 624 648 UGUAAAAAGCAAUA-ACGAGAACU :|| ||| |||||||| GUAUGGCUAGUUCUAUGCUCUUGU Vcpip1; Vcip135 rno-miR-344 611 638 UGCCAGUC-CGAA---ACCGAUCUAGU :|||||| || ||||||| || UUGGUCAGAGCCAGUAUGGCUAGUUCU Vcpip1; Vcip135 rno-miR-346 8 30 -UCUCCGUCCGUGAGUCCGUCUGU |||||| |: |||||||: UAGAGGCUA--AUAAAGGCAGAUG Vcpip1; Vcip135 rno-miR-34a 154 180 -UUGUUGGUCGA---UUCUGUGACGGU ::||| :|||| || |:|||||: UGGCAA-UAGCUUUUAAUAUACUGCUG Vcpip1; Vcip135 rno-miR-34b 159 180 GUUAGUCGAUUA--AUGUGACGGAU :|||| ||:|||||: ---AUAGCUUUUAAUAUACUGCUG- Vcpip1; Vcip135 rno-miR-34c 155 180 -CGUUAGUCGAUUG--AUGUGACGGA ||||| |||| ||:|||||: GGCAAU-AGCUUUUAAUAUACUGCUG Vcpip1; Vcip135 rno-miR-363-5p 556 581 -UUUAACGUAG---CACUAGGUGGGC :|:||| : || |||:|||| CGAGUUGGGGAGAAGU-AUCUACCCU Vcpip1; Vcip135 rno-miR-369-5p 580 599 GCUUAUAUUGUGCCAGCUAGA |:|||:|:| ||||:| -UAGUAUGAUAAAGUCGGUG- Vcpip1; Vcip135 rno-miR-370 1028 1053 UUGGUCCAAGGUGG-GG-UCGUCCG- :|||| |||| || || ||||| | UGCCAGUUUCCUCCUCCAAGCAG-CU Vcpip1; Vcip135 rno-miR-376a* 554 580 GAGUAUCU--UCCUCU---UAGAUGG- | || :||||| ||||||| -GCCGAGUUGGGGAGAAGUAUCUACCC Vcpip1; Vcip135 rno-miR-377 140 155 GGUUUUCAACGGAAACACACUA- || |||||||| --------AGCAAGUGUGUGAUU Vcpip1; Vcip135 rno-miR-409-3p 52 70 CCCCAAGUGGCUCGUUGUAA ||| :|:|:|| |||| --UGUUGGCUGGGCCACAUA Vcpip1; Vcip135 rno-miR-449 159 180 UGGUCGAUUGUUAUGUGACGGU :|||| :||||:|||||: -AUAGCUUUUAAUAUACUGCUG Vcpip1; Vcip135 rno-miR-485 1010 1039 CUUAAGUAGU-------GC-CGGUCGGAGA ||||||:| || |||||::|| -CAUUCAUUAACUCUUCCGUGCCAGUUUCC Vcpip1; Vcip135 rno-miR-494 226 253 -UCCAA--AGGGCACAUACA--AAGU- :|||| |:|| ||||||| |||| AGGGUUUAUUCCAUGUAUGUGGUUCAU Vcpip1; Vcip135 rno-miR-505 138 159 CCUUUGGUCGUUCACA-----ACUG- :||||||||| ||:| -----AUAGCAAGUGUGUGAUUGGCA Vcpip1; Vcip135 rno-miR-540 180 197 -GGUCCUAGCUGGAGACUGGA ||||| :|: |||||| CCCAGGC-UGG-CUCUGAA-- Vcpip1; Vcip135 rno-miR-7 1008 1029 UUGUUUUAGUGAUC-AGAAGGU- :|| |||:|| ||||||: UGCAU--UCAUUAACUCUUCCGU Vcpip1; Vcip135 rno-miR-7* 21 58 AUACCGUCUG------ACACU----------AAACAAC- ||||||: ||||| ||||||| --AGGCAGAUGUUUAUUGUGAAUAUGUAAUAUUUGUUGG Vcpip1; Vcip135 rno-miR-1 1067 1086 AUGUGUGAAGAAAUGUAAGGu || |||| | ||:||||| TAAACAC-AGTGTATATTCCt Vcpip1; Vcip135 rno-miR-1* 129 152 ccCAUGUAUU-UC-UUCAUACACg ||:|||:| || ||||:|||| caGTGCATGATAGCAAGTGTGTGa Vcpip1; Vcip135 rno-miR-1* 227 247 CCCAUGUAUUUCUUCAUACACg |||| :|| | ||||||| GGGTTTAT-TCCATGTATGTGg Vcpip1; Vcip135 rno-miR-103 157 181 agUAUCGGGA--CAUGUUACGACGa |||||::| ||:| |||||| caATAGCTTTTAATATACTGCTGCc Vcpip1; Vcip135 rno-miR-107 157 181 acUAUCGGGA--CAUGUUACGACGa |||||::| ||:| |||||| caATAGCTTTTAATATACTGCTGCc Vcpip1; Vcip135 rno-miR-10b 317 339 ugUGUUUAAGCC-AAGAUGUCcc | | |||:|| ||||:||| ctAAATATTTGGTTTCTGCAGag Vcpip1; Vcip135 rno-miR-128a 16 39 UUUUCUCUGGC--CAAGUGACACU || | ||:| | |||:|:||||| AATAAAGGCAGATGTTTATTGTGA Vcpip1; Vcip135 rno-miR-128b 18 39 cUUUC--UCUGGCCAAGUGACACU |||| |||: |||:|:||||| tAAAGGCAGAT--GTTTATTGTGA Vcpip1; Vcip135 rno-miR-140* 591 616 aCAGGCACCAAGA-UGGGAC-ACCAu ||| ||| || | :||| |||| aGTCGGTGTGACTCAGTCTGTTGGTc Vcpip1; Vcip135 rno-miR-145 1073 1102 uUCCC---UAAGGACCCU---UUUGACCUG || | ||||||| || : ||||||| cAGTGTATATTCCTGAGATTGGTACTGGAC Vcpip1; Vcip135 rno-miR-146 619 639 UUGG--GUACCUUAAGUCAAGAgu |:|| :|||| :|||||| AGCCAGTATGG---CTAGTTCTat Vcpip1; Vcip135 rno-miR-151 591 612 ggAGUUCCUCGGAGUCAGAuca ||:: | | |||||||| agTCGGTGTGACTCAGTCTgtt Vcpip1; Vcip135 rno-miR-18 426 447 AUAGACGUGAUCUACGUGGAAU || ||| |||| |||:|:|||| TACCTGAACTAAATGTATCTTA Vcpip1; Vcip135 rno-miR-183 1014 1034 GUCACUUAAGAUGGUCACGGUau || | || ||| || |||||| CA-TTAACTCTTCC-GTGCCAgt Vcpip1; Vcip135 rno-miR-184 1009 1032 uGGGAAUAGUCAAG-AGGCA-GGU | :| ||:| || ||||| ||| gCATTCATTAACTCTTCCGTGCCA Vcpip1; Vcip135 rno-miR-189 607 632 uGACUA-UAG--UCGAGUCAU-CCGug ||| | :|| ||| ||||| ||| tCTGTTGGTCAGAGC-CAGTATGGCta Vcpip1; Vcip135 rno-miR-192 595 618 CCG-AC--AGUUAAGUAUCCAGUC ||: || |||:| ::| |||||| GGTGTGACTCAGTCTGTTGGTCAG Vcpip1; Vcip135 rno-miR-193 611 635 gACC---CUGAAACAU-CCGGUCAA ||| || ||| |||:|||| tTGGTCAGAGCCAGTATGGCTAGTT Vcpip1; Vcip135 rno-miR-19a 955 979 AGUCAAA---ACGUAUCUAAACGUGu | ||||| ||||||| ||||: | TGAGTTTGGATGCATAG-TTTGTTCc Vcpip1; Vcip135 rno-miR-203 386 405 gAUCACCAGGAUUUGUAAAGUg ||| |||| |||||||| gTAGCCATCCT--ACATTTCAt Vcpip1; Vcip135 rno-miR-206 384 404 gguguguGAAGGAAUGUAAGGU | ||| ||||||:|| aggtagcCATCC-TACATTTCA Vcpip1; Vcip135 rno-miR-207 548 571 UUCCCUCCUCUCGG-UCCUCUUCg || ||| |||:: :||||||| AATTGAGCCGAGTTGGGGAGAAGt Vcpip1; Vcip135 rno-miR-216 1071 1093 GUGUCAACGGU--CGACUCUAAu |||||| :| |||||||| CACAGTGTATATTCCTGAGATTg Vcpip1; Vcip135 rno-miR-24 536 557 gacaAGGACGACUUGACUCGGu |::| |||||:|||||| cacaTTTTCCTGAATTGAGCCg Vcpip1; Vcip135 rno-miR-27b 23 40 CGUCUUGAAUCGGUGACACUU ||||| || :|:|||||| GCAGATGTT---TATTGTGAA Vcpip1; Vcip135 rno-miR-290 565 588 uUUUUCACGGG-GGUAUCAAACUc |:|||| :|: || |||| ||| gAGAAGTATCTACCCTAGTATGAt Vcpip1; Vcip135 rno-miR-297 963 988 gUACGUAU-GUACGUG--UGUAUGua ||||||| : ||: | |||||| gATGCATAGTTTGTTCCAACATACca Vcpip1; Vcip135 rno-miR-320 1035 1055 AAGCGGGAGAGUUGGGUCGAAAa ||| :|||| ||| ||||||| TTCCTCCTC-CAA-GCAGCTTTa Vcpip1; Vcip135 rno-miR-327 1019 1048 UGGGA--GUACGG--------GGA-GUUCc ||:|| |:|||| ||| |||| ACTCTTCCGTGCCAGTTTCCTCCTCCAAGc Vcpip1; Vcip135 rno-miR-331 164 190 AAGAUCCUAU--C--CGGGUCC--CCG ||:|| ||| | ||||||| ||| TTTTAATATACTGCTGCCCAGGCTGGC Vcpip1; Vcip135 rno-miR-346 9 29 UCUCCGUCCGUGAGUCCGUCUgu |||||| |: ||||||| AGAGGC--TAATAAAGGCAGAtg Vcpip1; Vcip135 rno-miR-34a 155 179 uuGUUGGUCG---AUUCUGUGACGgu ||| :||| ||| |:||||| ggCAA-TAGCTTTTAATATACTGCtg Vcpip1; Vcip135 rno-miR-34b 157 183 GUUAGUCG---AUUA-AUG-UGACGGau |||| ||| |||| ||| :||||| CAAT-AGCTTTTAATATACTGCTGCCca Vcpip1; Vcip135 rno-miR-34c 156 179 CGUUAGUCG--AUUGAUGUGACGga ||||| ||| | | ||:||||| GCAAT-AGCTTTTAATATACTGCtg Vcpip1; Vcip135 rno-miR-363-5p 557 580 uUUAACGUAGC-AC-UAGGUGGGc |:||| : | | |||:|||| gAGTTGGGGAGAAGTATCTACCCt Vcpip1; Vcip135 rno-miR-369-5p 579 599 GCUUAUAUUGUGCCAGCUAga | |:|||:|:| ||||:| CTAGTATGATAAAGTCGGTgt Vcpip1; Vcip135 rno-miR-376a* 558 578 gaguauCUUCCUCUUAGAUGG |:|| || ||||||| agttggGGAGAAGTATCTACC Vcpip1; Vcip135 rno-miR-409-3p 50 69 cccCAAGUGGCUCGUUGUAa ||| :|:|:|| |||| tttGTTGGCTGGGCCACATa Vcpip1; Vcip135 rno-miR-449 158 179 UGGUCGAUUGUUAUGUGACGgu | :|||| :||||:||||| AATAGCTTTTAATATACTGCtg Vcpip1; Vcip135 rno-miR-485 1017 1038 cUUAAGUAGUGC-CGGUCGGAGa || || || || |||||::|| tAACTCTTC-CGTGCCAGTTTCc Vcpip1; Vcip135 rno-miR-494 227 251 uCCAA--AGGGCACAUACA--AAGU |||| |:|| ||||||| |||| gGGTTTATTCCATGTATGTGGTTCA Vcpip1; Vcip135 rno-miR-505 133 153 CCUUUGGUCGUUCACA-ACUg | | : :||||||||| ||| GCATGATAGCAAGTGTGTGAt Vcpip1; Vcip135 rno-miR-540 181 198 GGUCCUAGCUGGAGACUgga ||||| | | |||||| CCAGGCTGG--CTCTGAatt Vcpip1; Vcip135 rno-miR-7 1006 1027 UUGUUUUAGUGA-UCAGAAGGu |::: | |||:| | |||||| AGTGCATTCATTAACTCTTCCg Vcpip1; Vcip135 rno-miR-1* 240 247 ----------------------CCCAUGUAUUUCUUCAUACACG |||| :|| ||||||| AAUUAGUUUAGAUCUUUUGAAAGGGUUUAUUCCAU-GUAUGUGG Vcpip1; Vcip135 rno-miR-203 398 405 G-----------------------AUCACCAGGAUUUGUAAAGUG ||| |||| ||||||||: AGUUGGUACACAUUGUCAUCAAGGUAGCCAUCCU--ACAUUUCAUG Vcpip1; Vcip135 rno-miR-207 564 571 UUCC-------------------CUCCUCUC-GGUCCUCUUCG ||| ||| : :|||||||: AGAGUGACACAUUUUCCUGAAUUGAGCCGAGUUGGGGAGAAGUA Vcpip1; Vcip135 rno-miR-216 1086 1093 --------------------GUGUCAACGGUC---GACUCUAAU |||||| |: ||||||||: CUUUAUGCUUAUUUAGUAAACACAGU-GUAUAUUCCUGAGAUUGG Vcpip1; Vcip135 rno-miR-320 1048 1055 ----------------------AAGCGGGAGAGUUGGGUCGAAAA ||| :|||| ||| ||||||| UCAUUAACUCUUCCGUGCCAGUUUCCUCCUC-CAAG-CAGCUUUA Vcpip1; Vcip135 rno-miR-335 640 647 U-------------------GUAAAAAGCAAUA-ACGAGAACU :|| ||| |||||||| AGUCUGUUGGUCAGAGCCAGUAUGGCUAGUUCUAUGCUCUUGU Vcpip1; Vcip135 rno-miR-377 146 153 GGUUUUCAA---------------------CGGAAACACACUA || |||||||| AGAUUAUAUCUUGUUAUUCAGUGCAUGAUAGCAAGUGUGUGAUU Vcpip1; Vcip135 rno-miR-7* 49 56 AUA-----CCGUCUG------ACAC----------UAAACAAC ||||||: |||| |||||||| CUAAUAAAGGCAGAUGUUUAUUGUGAAUAUGUAAUAUUUGUUGG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Vcpip1 RAID00200752 rno-miR-216a-5p miRNA MIMAT0000886 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID00275544 rno-miR-758-3p miRNA MIMAT0005335 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID00280940 rno-miR-410-3p miRNA MIMAT0005311 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID00411370 rno-miR-377-3p miRNA MIMAT0003123 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID00495981 rno-miR-204-5p miRNA MIMAT0000877 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID00632478 rno-miR-211-5p miRNA MIMAT0000882 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID00677812 rno-miR-186-5p miRNA MIMAT0000863 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID00779638 rno-miR-26b-5p miRNA MIMAT0000797 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID00830766 rno-miR-346 miRNA MIMAT0000596 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID00989673 rno-miR-429 miRNA MIMAT0001538 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01107498 rno-miR-146a-5p miRNA MIMAT0000852 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01141076 rno-miR-384-5p miRNA MIMAT0005309 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01176043 rno-miR-30d-5p miRNA MIMAT0000807 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01241748 rno-miR-335 miRNA MIMAT0000575 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01273666 rno-miR-329-3p miRNA MIMAT0000566 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01456252 rno-miR-495 miRNA MIMAT0005320 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01463941 rno-miR-488-3p miRNA MIMAT0005341 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01504091 rno-miR-136-5p miRNA MIMAT0000842 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01827498 rno-miR-26a-5p miRNA MIMAT0000796 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01838915 rno-miR-30e-5p miRNA MIMAT0000805 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID01999274 rno-miR-873-5p miRNA MIMAT0005339 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02013828 rno-miR-30a-5p miRNA MIMAT0000808 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02191439 rno-miR-20a-5p miRNA MIMAT0000602 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02255650 rno-miR-17-5p miRNA MIMAT0000786 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02393917 rno-miR-31a-5p miRNA MIMAT0000810 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02637791 rno-miR-374-5p miRNA MIMAT0003208 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02691670 rno-miR-30b-5p miRNA MIMAT0000806 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02726952 rno-miR-19a-3p miRNA MIMAT0000789 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02767679 rno-miR-328a-3p miRNA MIMAT0000564 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02810612 rno-miR-203a-3p miRNA MIMAT0000876 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02814042 rno-miR-19b-3p miRNA MIMAT0000788 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02815204 rno-miR-137-3p miRNA MIMAT0000843 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02924433 rno-miR-146b-5p miRNA MIMAT0005595 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID02953271 rno-miR-200b-3p miRNA MIMAT0000875 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03093607 rno-miR-365-3p miRNA MIMAT0001549 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03112978 rno-miR-381-3p miRNA MIMAT0003199 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03281339 rno-miR-425-5p miRNA MIMAT0005314 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03355101 rno-miR-30c-5p miRNA MIMAT0000804 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03426882 rno-miR-208a-3p miRNA MIMAT0000880 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03503113 rno-miR-499-5p miRNA MIMAT0003381 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03571681 rno-miR-494-3p miRNA MIMAT0003193 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03605262 rno-miR-487b-3p miRNA MIMAT0003200 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03702635 rno-miR-129-5p miRNA MIMAT0000600 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03812824 rno-miR-27a-3p miRNA MIMAT0000799 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03824103 rno-miR-9a-5p miRNA MIMAT0000781 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID03937738 rno-miR-27b-3p miRNA MIMAT0000798 Vcpip1 mRNA 286761 Prediction 0.1828 Vcpip1 RAID04033963 rno-miR-320-3p miRNA MIMAT0000903 Vcpip1 mRNA 286761 Prediction 0.1828