DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000604 rno-miR-350 155812 Trim9 cacuuucACAUACCCGAAA-CACUu || || |:||| |||| ucuuuucUGAUUGUGUUUUGGUGAc 2 18 334 358 [rn4:6:92359549-92359573:-] 0.5438 121 0 -9.96 -0.6981 MIMAT0000607 rno-miR-7a* 155812 Trim9 uaccgucUGACAC-UAAACAACa | || | ||||||| uuaauuuAGUGGGUUUUUGUUGu 2 16 259 281 [rn4:6:92359626-92359648:-] 0.5438 142 7 -11.70 -0.8122 MIMAT0004708 rno-miR-9* 155812 Trim9 ugAAAGCCAAUAG---AUCGAAAUa || :| ||: | ||||||| gcUUCUGUUUGACACGAAGCUUUAg 2 21 1358 1382 [rn4:6:92358525-92358549:-] 0.5498 143 7 -9.40 -0.2229 MIMAT0004709 rno-miR-10a-3p 155812 Trim9 auaaggggaUCUAU-GCUUAAAc ||| : ||||||| agguaggaaAGAAGCCGAAUUUa 2 14 449 471 [rn4:6:92359436-92359458:-] 0.5438 144 7 -7.28 -0.4635 MIMAT0004714 rno-miR-26b* 155812 Trim9 cucggUUCAUUACCUCUUGUCc ||| ||| |||||||| gguagAAG-AAU-GAGAACAGc 2 18 78 97 [rn4:6:92359810-92359829:-] 0.5093 157 7 -14.63 -0.1113 MIMAT0004725 rno-miR-99b* 155812 Trim9 gccuggguguCUGUGC-UCGAAc |||||| ||||| gcuucuguuuGACACGAAGCUUu 2 13 1358 1380 [rn4:6:92358527-92358549:-] 0.5498 124 0 -17.18 -0.2508 MIMAT0003175 rno-miR-543* 155812 Trim9 ucuucAC-GUGGCGCUUACAAa || | || ||||||| ccauuUGACUCCUAGAAUGUUc 2 17 479 500 [rn4:6:92359407-92359428:-] 0.5438 147 7 -10.11 -0.2870 MIMAT0003175 rno-miR-543* 155812 Trim9 ucuucacgUGGCGCUUACAAa | | ||||||| gccuuaaaAGCCAGAAUGUUa 2 14 1059 1079 [rn4:6:92358828-92358848:-] 0.5553 141 7 -8.92 -0.9638 MIMAT0003209 rno-miR-363* 155812 Trim9 uuuaacguAGCACUAGGUGGGc | | | ||||||| uccaccuuUAGAGCUCCACCCu 2 15 113 134 [rn4:6:92359773-92359794:-] 0.5093 146 7 -12.55 -0.2135 MIMAT0005286 rno-miR-878 155812 Trim9 agaUG-GGUCAUAC--CAC-AGUACg || |:|| ||| ||| ||||| aagACACUAGAAUGCUGUGUUCAUGa 2 20 751 776 [rn4:6:92359131-92359156:-] 0.5200 125 0 -16.54 -0.5350 MIMAT0005323 rno-miR-532-3p 155812 Trim9 acguucGGAACCC-ACACCC-UCc :|||||| ||||| || gcuacuUCUUGGGAGGUGGGCAGa 2 17 539 562 [rn4:6:92359345-92359368:-] 0.5438 123 0 -23.66 -0.2452 MIMAT0005337 rno-miR-760-3p 155812 Trim9 agggGUGU-CUGGGUCUCGGc || | ||| ||||||| ucagCAGAGGACACAGAGCCg 2 17 58 78 [rn4:6:92359829-92359849:-] 0.5093 155 7 -26.04 -0.1296 MIMAT0012827 rno-miR-1224 155812 Trim9 gagguggaggGGUCAGGAGUg |::||||||| augagaacagCUGGUCCUCAg 2 12 87 107 [rn4:6:92359800-92359820:-] 0.5093 147 7 -16.66 -0.1246 MIMAT0012831 rno-miR-544 155812 Trim9 cucgAACGAUUUUUAC-GUCUUa || |||: | || ||||| aucaUUCCUAGCAUUGACAGAAg 2 19 1290 1312 [rn4:6:92358595-92358617:-] 0.5553 126 0 -8.22 -0.4568 MIMAT0012837 rno-miR-632 155812 Trim9 aggCCGUCCUUUGUCUGUg | || | ||||||| ccaGCCAUCACACAGACAu 2 17 914 932 [rn4:6:92358975-92358993:-] 0.5553 148 7 -12.85 -0.2303 MIMAT0012837 rno-miR-632 155812 Trim9 aggccGUCC--UUUGU-CUGUg |||| ||||| |||| auccuCAGGAUAAACAUGACAu 2 15 1155 1176 [rn4:6:92358731-92358752:-] 0.5553 121 0 -18.70 -0.5250 MIMAT0012844 rno-miR-665 155812 Trim9 ucccuggaGUCGGAGGACCa || :||||||| ucaaaagaCAUUCUCCUGGa 2 13 381 400 [rn4:6:92359507-92359526:-] 0.5438 148 7 -17.79 -1.0901 MIMAT0012848 rno-miR-294 155812 Trim9 ucUAUCC--CGGAGGUAAAACUc :|||| | |:|||||||| auGUAGGUUGAAUUCAUUUUGAu 2 20 311 333 [rn4:6:92359574-92359596:-] 0.5438 158 7 -14.73 -0.6603 MIMAT0012851 rno-miR-547 155812 Trim9 gagugaauuucUUCAUGGUu |||||||| caaguuguucuAAGUACCAg 2 10 830 849 [rn4:6:92359058-92359077:-] 0.5553 145 7 -12.12 -0.5927 MIMAT0012852 rno-miR-667 155812 Trim9 gaacccgacccacCGUCCACAGu | ||||||| gagaggagucaaaGGAGGUGUCa 2 11 854 876 [rn4:6:92359031-92359053:-] 0.5553 142 7 -18.37 -0.3030 MIMAT0000606 rno-miR-7a 155812 Trim9 uguuGUUUUAGUGA-UCAGAAGGu || :| || | ||||||| uguuCAUGAACAGUCUGUCUUCCu 2 20 768 791 [rn4:6:92359116-92359139:-] 0.5200 150 7 -15.60 -0.4528 MIMAT0000780 rno-miR-7b 155812 Trim9 uguuGUUUUAGU-GUUCAGAAGGu || :| || : ||||||| uguuCAUGAACAGUCUGUCUUCCu 2 20 768 791 [rn4:6:92359116-92359139:-] 0.5200 146 7 -14.19 -0.4528 MIMAT0000810 rno-miR-31 155812 Trim9 gucgauACGGUCGU---AGAACGGa | |:|| | ||||||| uuugacUCCUAGAAUGUUCUUGCCc 2 17 482 506 [rn4:6:92359401-92359425:-] 0.5438 143 7 -15.02 -0.4968 MIMAT0000827 rno-miR-122 155812 Trim9 guuugugguaacaGUGUGAGGu |||||||| gacgcugaacccaCACACUCCa 2 10 895 916 [rn4:6:92358991-92359012:-] 0.5553 145 7 -21.84 -0.2889 MIMAT0000848 rno-miR-142-3p 155812 Trim9 aggUAUUUCAUCCUUUGUGAUGu :|:| || | ||||||| uugGUGACUUACG-UACACUACc 2 21 351 372 [rn4:6:92359535-92359556:-] 0.5438 146 7 -9.73 -0.2306 MIMAT0000853 rno-miR-150 155812 Trim9 gugaccauguucccAACCCUCu ||||||| uucauggcuacuucUUGGGAGg 2 9 533 554 [rn4:6:92359353-92359374:-] 0.5438 140 7 -19.01 -0.1625 MIMAT0000863 rno-miR-186 155812 Trim9 ucggguuuuccucUUAAGAAAc :||||||| uugaauucauuuuGAUUCUUUu 2 10 318 339 [rn4:6:92359568-92359589:-] 0.5438 141 7 -7.23 -0.5721 MIMAT0000871 rno-miR-196a 155812 Trim9 ggguuguUGUACUUUGAUGGAu ||:| | ||||||| gugacuuACGU-ACACUACCUg 2 16 354 374 [rn4:6:92359533-92359553:-] 0.5438 149 7 -15.05 -0.1198 MIMAT0000872 rno-miR-199a-5p 155812 Trim9 cuUGUCCAU-CAG-ACUUGUGACCc ||| || || | ||||||| gcACAAAUACAUCAUCUACACUGGc 2 22 601 625 [rn4:6:92359282-92359306:-] 0.5438 147 7 -12.34 -0.3385 MIMAT0000888 rno-miR-218 155812 Trim9 uguaccaaucuAGUUCGUGUu | ||||||| uuacuacacccUAAAGCACAa 2 11 586 606 [rn4:6:92359301-92359321:-] 0.5438 142 7 -10.05 -1.0224 MIMAT0000892 rno-miR-223 155812 Trim9 ccccauaaaCUGUUUG-ACUGu ||:|||| |||| cauccucagGAUAAACAUGACa 2 13 1154 1175 [rn4:6:92358732-92358753:-] 0.5553 120 0 -14.65 -0.7731 MIMAT0001082 rno-miR-196b 155812 Trim9 ggguuguUGUCCUUUGAUGGAu || | | ||||||| gugacuuAC-GUACACUACCUg 2 16 354 374 [rn4:6:92359533-92359553:-] 0.5438 145 7 -13.57 -0.1210 MIMAT0003119 rno-miR-224 155812 Trim9 auuugccuugguGAUCACUGAAc :|:||||||| ucugauuguguuUUGGUGACUUa 2 12 339 361 [rn4:6:92359546-92359568:-] 0.5438 147 7 -11.60 -0.5492 MIMAT0003179 rno-miR-542-3p 155812 Trim9 aaAGUCAAUAGUUAGACAGUGu || | | | : ||||||| caUCCGCUCACCG-CUGUCACa 2 21 1216 1236 [rn4:6:92358671-92358691:-] 0.5553 142 7 -14.59 -0.1604 MIMAT0003194 rno-miR-376c 155812 Trim9 ugcaCUUUAA-AGGAGAUACAa ||| || | :||||||| ccugGAACUUAUAUUCUAUGUa 2 18 789 810 [rn4:6:92359097-92359118:-] 0.5200 156 7 -12.05 -1.1100 MIMAT0003203 rno-miR-485 155812 Trim9 cuuaaGUAGUGCCGGUCGGAGa | |: | :||||||| ccaccCUUUCCCAUCAGCCUCu 2 18 128 149 [rn4:6:92359758-92359779:-] 0.5093 145 7 -16.14 -0.1790 MIMAT0003379 rno-miR-378 155812 Trim9 ggaagACUGAGGUUCA-GGUCa | ::||:|||| |||| ucaagUUGUUCUAAGUACCAGa 2 17 829 850 [rn4:6:92359057-92359078:-] 0.5553 124 0 -18.40 -0.8689 MIMAT0003381 rno-miR-499 155812 Trim9 uuUGUAGUGACGUUCAGAAUu :|||| | | |||||||| ugGCAUC-CAG-AAGUCUUAc 2 20 571 589 [rn4:6:92359318-92359336:-] 0.5438 155 7 -13.31 -0.3205 MIMAT0005303 rno-miR-196c 155812 Trim9 ggGUUGUUG--UGC-UUUGAUGGAu :::::|| ||| | ||||||| uuUGGUGACUUACGUACACUACCUg 2 21 350 374 [rn4:6:92359533-92359557:-] 0.5438 150 7 -17.98 -0.1210 MIMAT0005320 rno-miR-495 155812 Trim9 uucuuCACGUGGUACAAACAAa || ::|: |||||||| uuguuGUUUGCU-UGUUUGUUu 2 18 278 298 [rn4:6:92359609-92359629:-] 0.5438 151 7 -11.27 -0.9418

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055577 Trim9 Rattus norvegicus 155812

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Trim9; Spring rno-let-7a 20 62 -UUGAUA-----------UGU-------UGGAUGAUGGAGU ::||:| ||| :|||:| :||||| UGGCUGUCCCUGAGAAGGACAGCCCAGAGCCUGCAGCCUCAG Trim9; Spring rno-let-7b 39 62 -UUGGUGUGUUGGAUGAUGGAGU- |:|| || |:|||:| :||||| CAGCC-CAGAGCCUGCAGCCUCAG Trim9; Spring rno-let-7c 39 62 -UUGGUAUGUUGGAUGAUGGAGU- |:|| | |:|||:| :||||| CAGCCC-AGAGCCUGCAGCCUCAG Trim9; Spring rno-let-7e 21 62 -UGAUA-----------UGUUGGA----GGA---UGGAGU :||:| |||:|| ||| :||||| GGCUGUCCCUGAGAAGGACAGCCCAGAGCCUGCAGCCUCAG Trim9; Spring rno-let-7f 967 993 -UUGAUAUGUUAGAUGAUGG--AGU- ||||| |||:||:|| ||| UAACUAAGGUCUCUGCUGCCACUCAC Trim9; Spring rno-let-7i 37 62 -UGUCGUGUUU--GAUGAUGGAGU- ||||| ||:| ||:| :||||| GACAGCCCAGAGCCUGCAGCCUCAG Trim9; Spring rno-miR-101a 1004 1050 -GAAGUCA--------AUAGUG--------------UCAUGACAU ||||:| |:|||| |||:||||: UCUUCGGCAGAAAUGAUGUCACCAUUGUUACUCAUUAGUGCUGUGC Trim9; Spring rno-miR-101b 1004 1050 -GAAGUCG--------AUAGUG--------------UCAUGACAU ||||:|| |:|||| |||:||||: UCUUCGGCAGAAAUGAUGUCACCAUUGUUACUCAUUAGUGCUGUGC Trim9; Spring rno-miR-10a 601 640 -GUGUUUA---AG---------CCUAGA--UGUCCCAU- ||||||| || || || :||||||| GCACAAAUACAUCAUCUACACUGGCUCAUGGCAGGGUAA Trim9; Spring rno-miR-10b 600 638 -UGUGUUUA---AG---------CCAAGA--UGUCCC- :||||||| || || || :||||| AGCACAAAUACAUCAUCUACACUGGCUCAUGGCAGGGU Trim9; Spring rno-miR-122a 891 918 -UGUUUGUGGUAACA--GUGUGAGGU- || :||:|: ||||||||| GACUGACGCUGAACCCACACACUCCAG Trim9; Spring rno-miR-127 1235 1273 -UCGG-------------UUCGAGUCU-GCCUAGGCU- |||| ||||||| |||:| |: CAGCCUGACUUUCUAAAGAAGCUCAAAUCGGGUUUGGA Trim9; Spring rno-miR-128a 854 881 -UUUUCUCUGG-----CCA-AGUGACACU |:|:||| | ||| |||||| GAGAGGAGUCAAAGGAGGUGUCACUGA-- Trim9; Spring rno-miR-128b 855 881 CUUUCUCUGG-----CCA-AGUGACACU :|:||| | ||| |||||| AGAGGAGUCAAAGGAGGUGUCACUGA-- Trim9; Spring rno-miR-132 735 757 GCUGGUACCG--ACA---UCUGACAAU ||||| ||| ||| |||| GGACCA-GGCACUGUUCAAGACA---- Trim9; Spring rno-miR-133a 653 679 UGUCGA---CCAACUUCCC--CUGGUU- :||| ||| ||| |||||: -AGGCUCUAGGUACU-GGGAAGACCAGG Trim9; Spring rno-miR-133b 653 679 AUCGA---CCAACUUCCC--CUGGUU- :||| ||| ||| |||||: AGGCUCUAGGUACU-GGGAAGACCAGG Trim9; Spring rno-miR-135a 447 467 AGUGUAUCCUUAUUUUUCGGUAU || :|||||| |:|||||: GCAGGUAGGAA--AGAAGCCGA- Trim9; Spring rno-miR-135b 447 467 -GUGUAUCCUUACUUUUCGGUAU || :|||||| |:|||||: GCAGGUAGGAA--AGAAGCCGA- Trim9; Spring rno-miR-137 501 527 GAUGCGCA--UAAGAAU---UCGUUAU- :|| :|||||: ||||||: --UUGCCCUGGUUCUUGUCAAGCAAUGU Trim9; Spring rno-miR-138 611 628 CUAAGUGU-UGUGGUCGA- |||: ||||::||| --AUCAUCUACACUGGCUC Trim9; Spring rno-miR-141 917 936 -GGUAGAAAUG-GUCUGUCACAAU ||||| || |||||| ||| GCCAUC---ACACAGACA-UGUA- Trim9; Spring rno-miR-144 607 625 GAUCAUGUAGUAGAUAUGACAU ||||||||||| |||| ---AUACAUCAUCUACACUGG- Trim9; Spring rno-miR-148b 1 24 UGUUUCAA--GACACUA-CGUGACU- ::|| |||||: ||||||: ---GGGUGAGCUGUGGAGGCACUGGC Trim9; Spring rno-miR-152 503 527 -GGGUUCAAGA-CAGUACGUGACU ||| :||||| |||| ||| || GCCCUGGUUCUUGUCAAGCAAUGU Trim9; Spring rno-miR-17 366 394 -UGAUGGA-CGUGACA---UUC-GUGAAAC ||||||| ||||||| ||| ||:| CACUACCUGGCACUGUCAAAAGACAUUC-- Trim9; Spring rno-miR-184 129 155 -UGGGAA----UAGUCA-AGAGGCAGGU |||||| ||||| |||||| | CACCCUUUCCCAUCAGCCUCUCCG-CA- Trim9; Spring rno-miR-187 47 73 GCCGACGUUG----UGU--UCUGUGCU | |||||:| :|| :||||| AGCCUGCAGCCUCAGCAGAGGACACA- Trim9; Spring rno-miR-189 2 21 UGACUAUAGUCGAGUCAUCCGUG- :| |||| | |||||| -----GGUGAGCUGUGGAGGCACU Trim9; Spring rno-miR-199a 649 671 CUUGUCCAUCAGACUUGUGACCC- :||||| ||| :::|||||| AGACAGGC--UCUAGGUACUGGGA Trim9; Spring rno-miR-206 370 396 -GGUGUGUGA-AGGAA--UGUAAGGU || :|||| || ||||||: ACCUGGCACUGUCAAAAGACAUUCUC Trim9; Spring rno-miR-207 430 465 -UUCC-C----UCCUCUCG---GUCCU--CUUCG- |||| | |||||||| :|||| ||||| AAAGGUGUUCUAGGAGAGCAGGUAGGAAAGAAGCC Trim9; Spring rno-miR-20a 367 394 -GAUGGA-CGUGAUA---UUC-GUGAAAU |||||| |||||:| ||| ||:| ACUACCUGGCACUGUCAAAAGACAUUC-- Trim9; Spring rno-miR-212 6 28 CCGGCACUGACCU---CUGACAAU ||:|||: || |:|||| AGCUGUGGA-GGCACUGGCUGUC- Trim9; Spring rno-miR-214 1181 1205 GACG---GACAGACACGGACGACA ||: || ||||||||||:|| AUGUAUACUCUCUGUGCCUGUUGC Trim9; Spring rno-miR-219 415 432 UCUUAACGCAAACCUGUUAGU- |||||||||||| || -----AGCGUUUGGACAAACAA Trim9; Spring rno-miR-22 526 563 UGUCAAGAAGU--UGA---------------CCGUCGAA :||||||||| :|| ||||| UUAGUUCUUCAUGGCUACUUCUUGGGAGGUGGGCAGA-- Trim9; Spring rno-miR-223 866 900 -CC-CCAUAA--ACUGU--------UUGACUGU- || |||:| ||||| :||||||: AGGAGGUGUCACUGACAAACCCUCAGACUGACGC Trim9; Spring rno-miR-290 675 696 UUUUUCACGGGGGUAUCAAACUC |:||| ||| ||:|||||| --CAGGUGGCCCAAUGGUUUGAU Trim9; Spring rno-miR-291-3p 1 22 -CCGUGUGUUUCACCUUCGUGAAA ||: :| |||||:||||| GGGUGAGCU--GUGGAGGCACUG- Trim9; Spring rno-miR-296 650 686 -UGUCCUAA---CU---CCC-------CC-CCGGGA ||||| | ||| || ||||| GACAGGCUCUAGGUACUGGGAAGACCAGGUGGCCCA Trim9; Spring rno-miR-301 345 382 -UACGAA---ACUGU---UAUGAUAA----CGUGAC- :||:|| |||| :||| |||||| UGUGUUUUGGUGACUUACGUACACUACCUGGCACUGU Trim9; Spring rno-miR-324-3p 646 683 -GGUCG--UCGUG------GACCCCG-----UCACC- |||| :|| ||||| :|||| UCCAGACAGGCUCUAGGUACUGGGAAGACCAGGUGGC Trim9; Spring rno-miR-326 17 50 -UGACCU-------C-CUUCC---CGGGUCUCC ||||| | ||||| |||||||| CACUGGCUGUCCCUGAGAAGGACAGCCCAGAGC Trim9; Spring rno-miR-331 656 684 AAGAUCCU--AUCCG---GGUCC-CCG- |||||| |:|| ||||| ||| CUCUAGGUACUGGGAAGACCAGGUGGCC Trim9; Spring rno-miR-339 3 24 -ACUCGAGGACCUCC-UGUCCCU ||||| : |||||| || || GUGAGC-UGUGGAGGCACUGGC- Trim9; Spring rno-miR-340 6 40 CCGAUAUUUCAUUG----------ACUCUGCCU- |||:|::|| || ||||| ||| AGCUGUGGAGGCACUGGCUGUCCCUGAGAAGGAC Trim9; Spring rno-miR-342 1 18 CUGCCCACGCUAAAGACACACUCU- ||||| ||||| |||: ---GGGUGAG----CUGUG-GAGGC Trim9; Spring rno-miR-346 11 42 -UCUCCGU--CCGUGAG----UCCGUCUGU- :|||||| ||| || || :|||| UGGAGGCACUGGCUGUCCCUGAGAAGGACAG Trim9; Spring rno-miR-347 1 21 ACCCGCUGGG--UCUCCCUGU |||:|| |: :|||| || -GGGUGAGCUGUGGAGGCACU Trim9; Spring rno-miR-352 206 227 AUGAUACGUUGGAUGAUGAGA :|| ||||:|| || :||| AGCUCUGCAGCCCACCGCUCC Trim9; Spring rno-miR-363-5p 151 185 UUUAACGUAGC-ACU-------------AGG--UGGGC |||||| ||| ||| |||| ----CGCAUCGCUGAACCCAGGCUCCCUUCCUCACCCA Trim9; Spring rno-miR-376c 790 811 GCACUUUAAAG--GAGAUACAA ||:|| || :||||||| -CUGGAACUUAUAUUCUAUGUA Trim9; Spring rno-miR-422b 642 679 CGGAAGA-----CUGAGGUUCA----------GGUCA ||||| |:|||:|:|| |||| ACCUUCCAGACAGGCUCUAGGUACUGGGAAGACCAGG Trim9; Spring rno-miR-424 747 770 -AGGUUUUGUA--CUUAACGACGAC |:|||:||| ||| |||||: GUUCAAGACACUAGAA-UGCUGUG- Trim9; Spring rno-miR-449 3 25 UGGUCGAUUGUUAUGUGACGGU : ||||: :| :||||| | GUGAGCUGUGGAGGCACUGGCU Trim9; Spring rno-miR-451 653 694 -UUGAG--UCAU-------------UACCA--UUGCCAAA ::||| :||| :||| ||:||||| AGGCUCUAGGUACUGGGAAGACCAGGUGGCCCAAUGGUUUG Trim9; Spring rno-miR-483 547 568 UGUUCUGCCCUCC-CC--UCCUCACU :|||||| || || |||| -----UUGGGAGGUGGGCAGAAGUGC Trim9; Spring rno-miR-493 620 649 -GACCG-----UGUGUCA--UCUGGAAGU ||||| :|| :|| :||||||| ACUGGCUCAUGGCAGGGUAAGGACCUUCC Trim9; Spring rno-miR-542-3p 1222 1238 AAGUCAAUAGUUA-GACAGUGU- ||| |||||||| -------CUCACCGCUGUCACAG Trim9; Spring rno-miR-542-5p 14 35 GCACUGU-ACUACUAGGGGCUC- |:|| ||: :||||:||| --AGGCACUGGCUGUCCCUGAGA Trim9; Spring rno-miR-7 775 792 -UUGUUUUAGUGAUCAGAAGGU |||| :|| ||||||| GAACA--GUCU---GUCUUCCU Trim9; Spring rno-miR-7b 775 792 -UUGUUUUAGUGUUCAGAAGGU |||| :|| ||||||| GAACA--GUCU---GUCUUCCU Trim9; Spring rno-let-7a 39 60 uugauaUGUUGGAUGAUGGAGU | |:|||:| :||||| cagcccAGAGCCTGCAGCCTCA Trim9; Spring rno-let-7b 40 60 UUGGUGUGUUGGAUGAUGGAGU |:|| || |:|||:| :||||| AGCC-CAGAGCCTGCAGCCTCA Trim9; Spring rno-let-7c 40 60 UUGGUAUGUUGGAUGAUGGAGU |:|| | |:|||:| :||||| AGCC-CAGAGCCTGCAGCCTCA Trim9; Spring rno-let-7e 40 60 ugauaUGUUGGAGGAUGGAGU | |:||| | :||||| agcccAGAGCCTGCAGCCTCA Trim9; Spring rno-let-7f 968 989 UUGAUAUGUUAGAUGAUGGAGu ||||| : |||:||:|| | AACTAAGGTCTCTGCTGCCACt Trim9; Spring rno-let-7i 38 60 UGUCGUGUUU--GAUGAUGGAGU ||||| ||:| ||:| :||||| ACAGCCCAGAGCCTGCAGCCTCA Trim9; Spring rno-miR-101a 1025 1048 gaaguCAAU-AGU-GUCAUGACAu |||| ||| :|||:|||| ccattGTTACTCATTAGTGCTGTg Trim9; Spring rno-miR-101b 1025 1048 gaaguCGAU-AGU-GUCAUGACAu |:|| ||| :|||:|||| ccattGTTACTCATTAGTGCTGTg Trim9; Spring rno-miR-10a 602 638 GUGUUUA------AG------CCUAG-A-UGUCCCAU ||||||| || || || | :||||||| CACAAATACATCATCTACACTGGCTCATGGCAGGGTA Trim9; Spring rno-miR-10b 601 625 uGUGUUUAAG-CCAAGAUGU--CCc ||||||| | |||||| || gCACAAATACATCATCTACACTGGc Trim9; Spring rno-miR-122a 899 916 uguUUGUGGUAACAGUGUGAGGU ||| ||| ||||||||| ctgAAC-CCA----CACACTCCA Trim9; Spring rno-miR-127 1249 1271 ucggUUCGAGUCU-GCCUAGGCu ||||||| | |||:|::| aaagAAGCTCAAATCGGGTTTGg Trim9; Spring rno-miR-128a 863 882 uUUUCUCUGGCCA-AGUGACacu |||| || ||| |||||| cAAAG-GA--GGTGTCACTGaca Trim9; Spring rno-miR-128b 863 882 cUUUCUCUGGCCA-AGUGACacu |||| || ||| |||||| cAAAG-GA--GGTGTCACTGaca Trim9; Spring rno-miR-133a 651 677 UGUC---GACCAACUUCCC--CUGGUu |||| || | | ||| ||||| ACAGGCTCTAGGTACTGGGAAGACCAg Trim9; Spring rno-miR-133b 655 677 aucGACCAACUUCCC--CUGGUu || | | ||| ||||| gctCTAGGTACTGGGAAGACCAg Trim9; Spring rno-miR-135a 447 467 aGUGUAUCCUUAUUUUUCGGuau || :||||| ||:||||| gCAGGTAGGA--AAGAAGCCgaa Trim9; Spring rno-miR-135b 448 467 GUGUAUCCUUACUUUUCGGuau || :|||||| |:||||| CAGGTAGGAA--AGAAGCCgaa Trim9; Spring rno-miR-138 609 626 cuaAGU-GUUGUGGUCGA ||| | ||||::||| acaTCATCTACACTGGCT Trim9; Spring rno-miR-141 918 949 GGUAG---------AAAUGG-UCUGUCACAAu ||||| | |||| | ||||| | CCATCACACAGACATGTACCAACCCAGTGCTt Trim9; Spring rno-miR-144 604 625 GAUCAUGUAGUAGAUAUGACau | | ||||||||||| |||| CAAATACATCATCTACACTGgc Trim9; Spring rno-miR-150 535 554 GUGACCAUGUUCCCAACCCUCu ||: | ||| ||||||| CATGGCTAC--TTCTTGGGAGg Trim9; Spring rno-miR-152 504 526 GGGUUCAAG-ACAGUACGUGACu ||| :|||| ||||| ||| || CCCTGGTTCTTGTCAAGCAATGt Trim9; Spring rno-miR-17 367 382 UGAUGGACGUGACAUUCGUGAAAc |||||||| ||||| | ACTACCTG--------GCACTGTc Trim9; Spring rno-miR-184 130 156 UGGGAA----UAGUC-AAGAGGCaggu |||||| ||||| |||||| ACCCTTTCCCATCAGCCTCTCCGcatc Trim9; Spring rno-miR-187 53 73 GCCGACGUUGUGUUCUGUGcu | || ||:|| |:||||| CAGCCTCAGCAGAGGACACag Trim9; Spring rno-miR-189 1 19 ugacuauAGUCGAGUCAUCCGUG | |||| | |||||| ----gggTGAGCTGTGGAGGCAC Trim9; Spring rno-miR-196a 355 374 gguuguUGUACUUUGAUGGAu ||:| | ||||||| tgacttACGT-ACACTACCTg Trim9; Spring rno-miR-206 371 395 GGUGUGUGAAGG---AAUGUAAGgu || :|||| :| |||||| CCTGGCACTGTCAAAAGACATTCtc Trim9; Spring rno-miR-207 431 463 UUCC-C----UCCUCUCG---GUCC--UCUUCG |||| | |||||||| :||| |||||| AAGGTGTTCTAGGAGAGCAGGTAGGAAAGAAGC Trim9; Spring rno-miR-20a 359 382 gAUGGACGUGAU-AUUCGUGAAAu ||| | ||||| :||||| | tTACGTACACTACCTGGCACTGTc Trim9; Spring rno-miR-212 6 28 cCGGCACUGACCU--CUGACAau ||:|||: | | |:|||| aGCTGTGGAGGCACTGGCTGTcc Trim9; Spring rno-miR-214 1184 1204 gacgGACAGACACGGACGACa || ||||||||||:|| tataCTCTCTGTGCCTGTTGc Trim9; Spring rno-miR-219 410 430 ucuuaaCGCAAACCUGUUAGU |||||||||||| || tcttaaGCGTTTGGACAAACA Trim9; Spring rno-miR-223 867 898 CC-CCAUA--AACU--------GUUUGACUGu || |||:| ||| ||:|||||| GGAGGTGTCACTGACAAACCCTCAGACTGACg Trim9; Spring rno-miR-290 673 695 uuuUUCACGGGGGUAUCAAACUc |:||| ||| ||:|||||| accAGGTGGCCCAATGGTTTGAt Trim9; Spring rno-miR-291-3p 2 22 CCGUGUGUUUCACCUUCGUGAaa ||:: :| |||||:||||| GGTGAGC--TGTGGAGGCACTgg Trim9; Spring rno-miR-296 664 685 UGUCCUAACUCCCCC-CCGGGa || ||: || || ||||| ACTGGGAAGACCAGGTGGCCCa Trim9; Spring rno-miR-298 32 63 cCUUCUUGUCG------GGA----GGAGACGg ||||:||||| ||| |||| || aGAAGGACAGCCCAGAGCCTGCAGCCTCAGCa Trim9; Spring rno-miR-301 346 380 uACGAAAC-------UGU-UAUGAU--AACGUGAC ||:|||| ||: | |||| | |||||| gTGTTTTGGTGACTTACGTACACTACCTGGCACTG Trim9; Spring rno-miR-31 480 506 GUCGAU--ACGGUCGU---AGAACGGa || :|: | |:|| | ||||||| CATTTGACTCCTAGAATGTTCTTGCCc Trim9; Spring rno-miR-324-3p 647 668 GGUC-GUCGUGGACCCCGUCACC |||| ||| :|| ||:| ||| CCAGACAGGCTCT-AGGTACTGG Trim9; Spring rno-miR-326 28 49 uGAC-CUCCUUCCCGGGUCUCc ||| || |:| |||||||| cCTGAGAAGGACAGCCCAGAGc Trim9; Spring rno-miR-339 20 44 ACUCGA---GGAC-C-UCCUGUCccu || ||| |||| | ||||||| TG-GCTGTCCCTGAGAAGGACAGccc Trim9; Spring rno-miR-340 21 38 CCGAUAUUUCAUUGACUCUGCCU |||| || |||||| ||| GGCT-----GTCCCTGAGAAGGA Trim9; Spring rno-miR-346 9 28 uCUCCGUCCGUGAGUCCGUCUGu | || ||||||| ||| | | tGTGG-AGGCACT--GGCTGTCc Trim9; Spring rno-miR-347 20 40 ACCCGCUGGG--UCUCCCUGU ||| :| ||| ||| ||||| TGGCTGTCCCTGAGAAGGACA Trim9; Spring rno-miR-363-5p 173 197 uuuaacGUAGCACU---AGGUGGGC || | || ||:||||| cttcctCACCCAGAAACTCTACCCG Trim9; Spring rno-miR-422b 655 678 CGGAAGAC-UGA-GGUUCAGGUCa ||: | | ||| ||| |||| GCTCTAGGTACTGGGAAGACCAGg Trim9; Spring rno-miR-424 748 770 AGGUUUUGU-ACUUAACGACgac |:|||:||| | :| ||||| TTCAAGACACTAGAATGCTGtgt Trim9; Spring rno-miR-451 672 692 uUGAGUCAUUACC--AUUGCCAAA || ||| :||| ||:||||| gAC-CAG--GTGGCCCAATGGTTT Trim9; Spring rno-miR-483 542 567 uguucugCCCUC--CCC-UCCUCACu ||||| ||| || |||| acttcttGGGAGGTGGGCAGAAGTGc Trim9; Spring rno-miR-485 128 149 cuuaaGUAGUGCCGGUCGGAGA | |: | :|||||||| ccaccCTTTCCCATCAGCCTCT Trim9; Spring rno-miR-485 34 60 cuuaaGUAGUG-C-CG---GUCGGAGa || | | | || ||||||| aaggaCAGCCCAGAGCCTGCAGCCTCa Trim9; Spring rno-miR-485 148 172 cuuaaGUAGUGCC---GGUCGGAGA ||||:| | |||| ||| ctccgCATCGCTGAACCCAGGCTCC Trim9; Spring rno-miR-493 621 648 GACCGUGU---GU--CAU--CUGGAAGu ||||| || || ||| ||||||| CTGGCTCATGGCAGGGTAAGGACCTTCc Trim9; Spring rno-miR-542-3p 1217 1236 aAGUCAAUAGUUAGACAGUGU || | | | : |||||||| aTCCGCTCACCG-CTGTCACA Trim9; Spring rno-miR-542-5p 12 33 gCACUGU-ACUACUAGGGGCUC | |:|| ||: :||||:||| gGAGGCACTGGCTGTCCCTGAG Trim9; Spring rno-miR-7 770 791 uuGUUUUAGU--GAUCAGAAGGu || :| || || ||||||| ttCATGAACAGTCT-GTCTTCCt Trim9; Spring rno-miR-92 551 571 gUCCGGCCCUGUUCACGUUAu |||: || | ||||||| | gAGGTGGGCAGAAGTGCATTt Trim9; Spring rno-miR-122a 909 916 ------------------UGUUUGUGGUAACA--GUGUGAGGU || :||:|: ||||||||| UCACUGACAAACCCUCAGACUGACGCUGAACCCACACACUCCAG Trim9; Spring rno-miR-137 518 525 -----------------GAUGCGCA--UAAGAA---UUCGUUAU || :|| :||||| |||||||: UUGACUCCUAGAAUGUUCU-UGCCCUGGUUCUUGUCAAGCAAUGU Trim9; Spring rno-miR-150 547 554 GUG----------------------ACC-AUGUUCCCAACCCUCU ||| ||| |||||||: CUUGUCAAGCAAUGUUAGUUCUUCAUGGCUACUUC--UUGGGAGGU Trim9; Spring rno-miR-196a 367 374 -------------------GGUUGUUGUACUU---UGAUGGAU : : || |||||||: AUUCUUUUCUGAUUGUGUUUUGGUGACUUACGUACACUACCUGG Trim9; Spring rno-miR-31 499 506 G--------UCGAUACGGU---------------CGUAGAACGGA ||:| ||||| |: ||||||| CGAAUUUAGAGUU-UGCCAUUUGACUCCUAGAAUGU-UCUUGCCC Trim9; Spring rno-miR-326 42 49 UG--ACCUCC-----------------UUCC---CGGGUCUCC |||||| |||| |||||||| GCUGUGGAGGCACUGGCUGUCCCUGAGAAGGACAGCCCAGAGC Trim9; Spring rno-miR-376c 803 810 GC---------------------ACUUUAAAG--GAGAUACAA ||:|| || :||||||| UGUUCAUGAACAGUCUGUCUUCCUGGAACUUAUAUUCUAUGUA Trim9; Spring rno-miR-485 53 60 ---------------CUUAA-GUA--GUGCCG---GUCGGAGA ||| || || || ||||||| ACUGGCUGUCCCUGAGAAGGACAGCCCAGAGCCUGCAGCCUCA Trim9; Spring rno-miR-485 142 149 CUUAAGUAGUGCC---------------------GGUCGGAGA :|||||||| GCAAUCUCCACCUUUAGAGCUCCACCCUUUCCCAUCAGCCUCUC Trim9; Spring rno-miR-493 641 648 ---------------GACCG-----UGUGUCA--UCUGGAAGU ||||| :|| :|| :||||||| AAUACAUCAUCUACACUGGCUCAUGGCAGGGUAAGGACCUUCC Trim9; Spring rno-miR-542-3p 1229 1236 AAGUCAAU---------------------AGUUA-GACAGUGU ||| |||||||| GUGCCUGUUGCAAAUGAGACUCCAUCCGCUCACCGCUGUCACAG Trim9; Spring rno-miR-7 784 791 UUGUUUUAGUGAU------------------------CAGAAGGU |||:| ||||| ||||||| U-CAAGA-CACUAGAAUGCUGUGUUCAUGAACAGUCUGUCUUCCU Trim9; Spring rno-miR-7b 784 791 ---------------------------UUGUUUUAGUGUUCAGAAGGU |||| :|| ||||||| UCAAGACACUAGAAUGCUGUGUUCAUGAACA--GUCU---GUCUUCCU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim9 RAID00012090 rno-miR-6318 miRNA MIMAT0025055 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID00084251 rno-miR-485-5p miRNA MIMAT0003203 Trim9 mRNA 155812 Prediction 0.2202 Trim9 RAID00136028 rno-miR-741-5p miRNA MIMAT0017901 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID00295459 rno-miR-31a-5p miRNA MIMAT0000810 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID00496127 rno-miR-196c-5p miRNA MIMAT0005303 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID00641708 rno-miR-495 miRNA MIMAT0005320 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID00689979 rno-miR-378a-3p miRNA MIMAT0003379 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID00804307 rno-miR-3543 miRNA MIMAT0017797 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID00816116 rno-miR-664-2-5p miRNA MIMAT0017229 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID00985393 rno-miR-7a-5p miRNA MIMAT0000606 Trim9 mRNA 155812 Prediction 0.2202 Trim9 RAID01057339 rno-miR-218a-5p miRNA MIMAT0000888 Trim9 mRNA 155812 Prediction 0.2202 Trim9 RAID01199089 rno-miR-224-5p miRNA MIMAT0003119 Trim9 mRNA 155812 Prediction 0.2202 Trim9 RAID01666712 rno-miR-196a-5p miRNA MIMAT0000871 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID01708052 rno-miR-376c-3p miRNA MIMAT0003194 Trim9 mRNA 155812 Prediction 0.2202 Trim9 RAID01814646 rno-miR-665 miRNA MIMAT0012844 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID02049906 rno-miR-196b-5p miRNA MIMAT0001082 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID02107118 rno-miR-320-5p miRNA MIMAT0017168 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID02320974 rno-miR-199a-5p miRNA MIMAT0000872 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID02475996 rno-miR-760-3p miRNA MIMAT0005337 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID02480404 rno-miR-223-3p miRNA MIMAT0000892 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID02545799 rno-miR-664-1-5p miRNA MIMAT0017228 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID02547316 rno-miR-499-5p miRNA MIMAT0003381 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID02993362 rno-miR-7b miRNA MIMAT0000780 Trim9 mRNA 155812 Prediction 0.2202 Trim9 RAID03100255 rno-miR-142-3p miRNA MIMAT0000848 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID03161220 rno-miR-6319 miRNA MIMAT0025056 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID03260021 rno-miR-186-5p miRNA MIMAT0000863 Trim9 mRNA 155812 Prediction 0.2202 Trim9 RAID03269271 rno-miR-103-2-5p miRNA MIMAT0017113 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID03583172 rno-miR-122-5p miRNA MIMAT0000827 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID03794254 rno-miR-150-5p miRNA MIMAT0000853 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID03985499 rno-miR-542-3p miRNA MIMAT0003179 Trim9 mRNA 155812 Prediction 0.1828 Trim9 RAID04044418 rno-miR-219b miRNA MIMAT0017882 Trim9 mRNA 155812 Prediction 0.1828