DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000604 rno-miR-350 297699 Strap cacuuucacauacccgaAACACUu |||||| uuuuuuucucugcuuagUUGUGAa 2 8 340 363 [rn4:4:174877616-174877639:+] 0.6274 120 6 -8.49 -0.1415 MIMAT0003152 rno-miR-22* 297699 Strap auuucgaACGGUG--ACUUCUUga ||:||: |||||| cuguuucUGUCAUGGAGAAGAAaa 3 16 274 297 [rn4:4:174877550-174877573:+] 0.6274 126 0 -12.51 -0.1714 MIMAT0000813 rno-miR-34b 297699 Strap guUAGUCGAUUAAUGUGACGGAu :|:| |||| || | ||||| uaGUUAUCUAAAUAAAAUGCCUc 2 22 441 463 [rn4:4:174877717-174877739:+] 0.6274 141 0 -13.77 -0.1564 MIMAT0004726 rno-miR-101a* 297699 Strap cguagucgugacacUAUUGACu :|||||| aaauacaugauaaaGUAACUGg 2 9 371 392 [rn4:4:174877647-174877668:+] 0.6274 124 6 -10.04 -0.2038 MIMAT0000900 rno-miR-298 297699 Strap ccCUUCUUGUCG---GGAGGAGACGg ||||||:: | ::|:|||||| uuGAAGAAUGCCUUUUUUUCUCUGCu 2 22 328 353 [rn4:4:174877604-174877629:+] 0.6274 148 6 -26.19 -0.1015 MIMAT0003115 rno-miR-207 297699 Strap uucccuccucuCGGU-CCUCUUCg |:|| ||||||| uagcuguuucuGUCAUGGAGAAGa 2 13 271 294 [rn4:4:174877547-174877570:+] 0.6274 147 7 -16.50 -1.2099 MIMAT0003124 rno-miR-412 297699 Strap ugccgaucaccuggucCACUUCa |||||| uuuucucugcuuaguuGUGAAGa 2 8 343 365 [rn4:4:174877619-174877641:+] 0.6274 120 6 -9.62 -0.1312 MIMAT0003177 rno-miR-541 297699 Strap ucaCACUGGUUGUAGUCUUAGGGAa || |:| | || | ||| ||| uuaGUUAUCUAAAU-AAAAUGCCUc 2 23 440 463 [rn4:4:174877716-174877739:+] 0.6274 128 0 -8.31 -0.1920 MIMAT0005285 rno-miR-877 297699 Strap gggacgcgguagaGGAGAUg |||||| ucuaaauaaaaugCCUCUAa 2 8 447 466 [rn4:4:174877723-174877742:+] 0.6274 120 6 -9.60 -0.4793 MIMAT0005286 rno-miR-878 297699 Strap agAUGGGUCAUACCACAGUACg || |: || | ||||||| ugUAGCU-GU-UUCUGUCAUGg 2 21 269 288 [rn4:4:174877545-174877564:+] 0.6274 144 7 -11.47 -0.4288 MIMAT0005290 rno-miR-883 297699 Strap uaugacucUCUAC--AACGUCAAu ||||| ||||||| ugugccgcAGAUGCCAUGCAGUUg 2 15 14 37 [rn4:4:174877290-174877313:+] 0.6274 149 7 -16.86 -0.1818 MIMAT0012824 rno-miR-513 297699 Strap uacuuucuguggaagAACACUu |||||| uuuuucucugcuuagUUGUGAa 2 8 342 363 [rn4:4:174877618-174877639:+] 0.6274 120 6 -10.17 -0.1471 MIMAT0012831 rno-miR-544 297699 Strap cuCGAACGAUUUUUACGU-CUUa | ||||| |:|||| ||| ugGAUUGCU-CCAGUGCACGAAc 2 21 114 135 [rn4:4:174877390-174877411:+] 0.6274 122 0 -12.34 -0.3191 MIMAT0012845 rno-miR-935 297699 Strap cgccaucgccuucgcCAUUGACc ||||||| gaaauacaugauaaaGUAACUGg 2 9 370 392 [rn4:4:174877646-174877668:+] 0.6274 140 7 -13.17 -1.1627 MIMAT0012850 rno-miR-465 297699 Strap guguggucguggcaAGAUUUAu ||||||| uaauuuuuuaguuaUCUAAAUa 2 9 433 454 [rn4:4:174877709-174877730:+] 0.6274 140 7 -8.25 -1.3259 MIMAT0012853 rno-miR-761 297699 Strap acACAGUCAAAGUGGGACGACg || | | | ||||||| agUGCCUGCCAAAGCCUGCUGc 2 21 203 224 [rn4:4:174877479-174877500:+] 0.6274 144 7 -20.67 -0.3648 MIMAT0000573 rno-miR-140 297699 Strap gaUGGUAUCCCAU-UUUGGUGAc :|: || | | :||||||| uuGCUCCAGUGCACGAACCACUa 2 21 118 140 [rn4:4:174877394-174877416:+] 0.6274 147 7 -14.41 -0.3268 MIMAT0000615 rno-miR-101b 297699 Strap aaGUCGAUAGUGUCAU-GACAu ||| | || | ||| |||| ccCAGAUCUC-CUGUAGCUGUu 2 20 258 278 [rn4:4:174877534-174877554:+] 0.6274 121 0 -11.90 -0.5391 MIMAT0000823 rno-miR-101a 297699 Strap aaGUCAAUAGUGUCAU-GACAu ||| | || | ||| |||| ccCAGAUCUC-CUGUAGCUGUu 2 20 258 278 [rn4:4:174877534-174877554:+] 0.6274 121 0 -10.85 -0.5391 MIMAT0000838 rno-miR-132 297699 Strap gcUGGUACCGACAUCUGACAAu :| | || |||||||| ugGCAAAGGGGACAGACUGUUg 2 21 87 108 [rn4:4:174877363-174877384:+] 0.6274 148 7 -18.37 -0.1675 MIMAT0000842 rno-miR-136 297699 Strap agguaguaguuuuguuUACCUCa |||||| uguagcuguuucugucAUGGAGa 2 8 269 291 [rn4:4:174877545-174877567:+] 0.6274 120 6 -9.55 -0.1023 MIMAT0000846 rno-miR-141 297699 Strap gguagaaaUGGU-CUGUCACAAu |||| |||||||| gugcacgaACCACUACAGUGUUg 2 15 126 148 [rn4:4:174877402-174877424:+] 0.6274 153 7 -17.97 -0.2687 MIMAT0000852 rno-miR-146a 297699 Strap uuggGUA-CCUUAAGUCAA-GAGu ||| || ||||||| ||| ccggCAUCGGCCUUCAGUUACUCu 2 19 58 81 [rn4:4:174877334-174877357:+] 0.6274 129 0 -16.90 -0.1320 MIMAT0000869 rno-miR-194 297699 Strap agGUGUACCUCAACGACAA-UGu || : ||||| ||||| || ggCAGGAGGAGU--CUGUUCACc 2 21 181 201 [rn4:4:174877457-174877477:+] 0.6274 121 0 -15.51 -0.2879 MIMAT0000874 rno-miR-200a 297699 Strap uguagcaaUGGU-CUGUCACAAu |||| |||||||| gugcacgaACCACUACAGUGUUg 2 15 126 148 [rn4:4:174877402-174877424:+] 0.6274 153 7 -20.34 -0.2687 MIMAT0000883 rno-miR-212 297699 Strap accggcacugaccUCUGACAAu |||||||| uggcaaaggggacAGACUGUUg 2 10 87 108 [rn4:4:174877363-174877384:+] 0.6274 145 7 -20.56 -0.1643 MIMAT0000885 rno-miR-214 297699 Strap gaCGGACAGACACGGACGACa ||||| | |||||||| guGCCUGCCAAAGCCUGCUGc 2 20 204 224 [rn4:4:174877480-174877500:+] 0.6274 163 7 -26.23 -0.3533 MIMAT0000887 rno-miR-217 297699 Strap uaggucaGUCAAGGACUACGUCAu ||| | | ||||||| ugugccgCAGAUGC-CAUGCAGUu 2 18 14 36 [rn4:4:174877290-174877312:+] 0.6274 147 7 -18.29 -0.3056 MIMAT0005595 rno-miR-146b 297699 Strap ugUCGGAUACCUUAAGUCAA-GAGu :|| | || ||||||| ||| ccGGCAU-CGGCCUUCAGUUACUCu 2 23 58 81 [rn4:4:174877334-174877357:+] 0.6274 124 0 -19.00 -0.1320

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101210 Strap Rattus norvegicus 297699

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Strap RAID00210552 rno-miR-212-3p miRNA MIMAT0000883 Strap mRNA 297699 Prediction 0.1828 Strap RAID00584079 rno-miR-465-5p miRNA MIMAT0012850 Strap mRNA 297699 Prediction 0.1828 Strap RAID00626095 rno-miR-146b-5p miRNA MIMAT0005595 Strap mRNA 297699 Prediction 0.1828 Strap RAID00782108 rno-miR-214-3p miRNA MIMAT0000885 Strap mRNA 297699 Prediction 0.1828 Strap RAID00796017 rno-miR-3064-3p miRNA MIMAT0035738 Strap mRNA 297699 Prediction 0.1828 Strap RAID00952156 rno-let-7c-1-3p miRNA MIMAT0017087 Strap mRNA 297699 Prediction 0.2202 Strap RAID01108345 rno-miR-146a-5p miRNA MIMAT0000852 Strap mRNA 297699 Prediction 0.1828 Strap RAID01233637 rno-miR-101b-3p miRNA MIMAT0000615 Strap mRNA 297699 Prediction 0.1828 Strap RAID01433070 rno-miR-194-5p miRNA MIMAT0000869 Strap mRNA 297699 Prediction 0.1828 Strap RAID01455812 rno-miR-101a-3p miRNA MIMAT0000823 Strap mRNA 297699 Prediction 0.1828 Strap RAID01604336 rno-miR-141-3p miRNA MIMAT0000846 Strap mRNA 297699 Prediction 0.1828 Strap RAID01817922 rno-miR-16-3p miRNA MIMAT0017094 Strap mRNA 297699 Prediction 0.1828 Strap RAID02076860 rno-miR-217-5p miRNA MIMAT0000887 Strap mRNA 297699 Prediction 0.1828 Strap RAID02353836 rno-miR-140-5p miRNA MIMAT0000573 Strap mRNA 297699 Prediction 0.1828 Strap RAID02379018 rno-miR-200a-3p miRNA MIMAT0000874 Strap mRNA 297699 Prediction 0.1828 Strap RAID02925941 rno-miR-219b miRNA MIMAT0017882 Strap mRNA 297699 Prediction 0.1828 Strap RAID03006998 rno-miR-132-3p miRNA MIMAT0000838 Strap mRNA 297699 Prediction 0.1828 Strap RAID03603559 rno-miR-136-5p miRNA MIMAT0000842 Strap mRNA 297699 Prediction 0.1828 Strap RAID03773704 rno-miR-3570 miRNA MIMAT0017850 Strap mRNA 297699 Prediction 0.1828