DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000592 rno-miR-344-3p 300744 Ubl7 ugcCAGUCCGAAACCGAUCUAGu || | |:| ||||||| cuuGUGAAGUUGCUUCUAGAUCc 2 21 56 78 [rn4:8:61707619-61707641:+] 0.5581 148 7 -11.31 -0.3889 MIMAT0003209 rno-miR-363* 300744 Ubl7 uuUAACGUAGCACUA-GGUGGGc :|||| || ||| |||||| aaGUUGCUUCUAGAUCCCACCCc 2 21 62 84 [rn4:8:61707625-61707647:+] 0.5581 136 6 -20.87 -0.8644 MIMAT0012824 rno-miR-513 300744 Ubl7 uaCUUUCUGUGGAAGAACACUu | |:|| :| ||||||| ugGCAGGAGGC--ACUUGUGAa 2 21 44 63 [rn4:8:61707607-61707626:+] 0.5581 145 7 -16.64 -0.5296 MIMAT0000844 rno-miR-138 300744 Ubl7 gccGGACUAAGUG-UUGUGG-UCGa :|| :| | | |||||| ||| acuUCUUGUACCCAAACACCUAGCa 2 21 1 25 [rn4:8:61707564-61707588:+] 0.6732 123 0 -16.31 -0.8678 MIMAT0003114 rno-miR-383 300744 Ubl7 ucggugUCAGUGGAAGA-CUAGa |||:: ||||| |||| uugugaAGUUG-CUUCUAGAUCc 2 17 57 78 [rn4:8:61707620-61707641:+] 0.5581 122 0 -11.63 -0.3638

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ubl7; Bmsc-UbP; rCG_58046 rno-miR-128a 31 64 -UUUUCU-------CUGGCCAA-GUGA-CACU- ::||| |:| || |||| |||| CGGAAGCUAUUCCUGGCAGGAGGCACUUGUGAA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-128b 31 64 -CUUUCU-------CUGGCCAA-GUGA-CACU- |:||| |:| || |||| |||| CGGAAGCUAUUCCUGGCAGGAGGCACUUGUGAA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-17 35 60 -UGAU--GGA-CGUGACAUUCGUGAAAC :||| ||| ||| |:|||||| AGCUAUUCCUGGCAGG--AGGCACUUG- Ubl7; Bmsc-UbP; rCG_58046 rno-miR-189 26 58 -UGACUAUAGUCGA--------GUCAUCCGUG- |:|| |||| ||| |||||| AAUUGCGGA-AGCUAUUCCUGGCAGGAGGCACU Ubl7; Bmsc-UbP; rCG_58046 rno-miR-195 92 111 CGGUUAUAAAGAC-ACGACGAU ||||||| |||| |||| CCCAAUAUAUCUGAUGCUC--- Ubl7; Bmsc-UbP; rCG_58046 rno-miR-20a 17 60 GAUGGA-CG-----------UGAUA----------UUCGUGAAAU |||| || :|||| |:|||||| -CACCUAGCAAAUUGCGGAAGCUAUUCCUGGCAGGAGGCACUUG- Ubl7; Bmsc-UbP; rCG_58046 rno-miR-20b 41 60 UGGA-CGUGAUACUCGUGAAAC ||| ||| | :|||||| UCCUGGCAGGA--GGCACUUG- Ubl7; Bmsc-UbP; rCG_58046 rno-miR-27a 29 65 -CGCCU-----------UGAA-UCGGUGA-CACUU- ||||| :| || |||| ||||| UGCGGAAGCUAUUCCUGGCAGGAGGCACUUGUGAAG Ubl7; Bmsc-UbP; rCG_58046 rno-miR-27b 45 65 -CGUCUUGAAUCGGUGA-CACUU- ||||: || |||| ||||| GGCAGG----AGGCACUUGUGAAG Ubl7; Bmsc-UbP; rCG_58046 rno-miR-291-3p 42 60 CCGUGUGUUUCACCUUCGUGAAA | :|| |||:|||||| -CCUGGCA----GGAGGCACUUG Ubl7; Bmsc-UbP; rCG_58046 rno-miR-292-3p 15 60 -UGUGA---GUUUU-------------GGACCG----CCGUGAA |||| |||| |||||| ||||||| AACACCUAGCAAAUUGCGGAAGCUAUUCCUGGCAGGAGGCACUUG Ubl7; Bmsc-UbP; rCG_58046 rno-miR-324-3p 19 63 -GGUCG----------UCGU---GGACC-----CCGU---CACC |:||| ||| ||||| |||| ||| CCUAGCAAAUUGCGGAAGCUAUUCCUGGCAGGAGGCACUUGUGA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-325 52 76 -UGUGAAUGACU-CGUGGAUGAUCC :|||||: ||| |: || |||| GGCACUUG-UGAAGUUGCUUCUAGA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-339 34 55 ACUCG---AGGACC-UCCUGUCCCU ||| |||||| |||| || -AAGCUAUUCCUGGCAGGA--GGC- Ubl7; Bmsc-UbP; rCG_58046 rno-miR-344 43 79 UGCCAGUCCGA------------AACC--GAUCUAGU :|| |||| ||| ||||||| CUGG-CAGGAGGCACUUGUGAAGUUGCUUCUAGAUCC Ubl7; Bmsc-UbP; rCG_58046 rno-miR-346 44 64 UCUCCGUCCGUGAGUCCGU---CUGU- |||||| ||||| | | --UGGCAGG-----AGGCACUUGUGAA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-347 31 57 ACC--CGCU--GGGUC-UCC-CUGU- || || ||::| ||| |:|| CGGAAGCUAUUCCUGGCAGGAGGCAC Ubl7; Bmsc-UbP; rCG_58046 rno-miR-363-5p 61 85 -UUUAACGUAGCACUAG-GUGGGC ||:|||| || |||| ||||| GAAGUUGCUUCUAGAUCCCACCCC Ubl7; Bmsc-UbP; rCG_58046 rno-miR-370 30 52 UUGGUCCAAGGUGGGG-UCGUCCG |:| |:|::|| :||||| --GCGGAAGCUAUUCCUGGCAGGA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-378 29 54 UGUGUCCU------GGACCUCAGUCCUC- :|:| ||||| |||||| -UGCGGAAGCUAUUCCUGG---CAGGAGG Ubl7; Bmsc-UbP; rCG_58046 rno-miR-383 50 79 -UCGGUGU-CA----GUGGAAGA-CUAGA || ||| || : ||||| |||| GAGGCACUUGUGAAGUUGCUUCUAGAUCC Ubl7; Bmsc-UbP; rCG_58046 rno-miR-412 43 67 UGCCGAUCACC-UGGUCCACUUCA- :||| :| || ||: ||||||| CUGGCAGGAGGCACUU-GUGAAGUU Ubl7; Bmsc-UbP; rCG_58046 rno-miR-541 57 81 -ACACUGGU-UGUAGUCUUAGGGAA ||||| :| || :||||| UUGUGAAGUUGCUUCUAGAUCCCA- Ubl7; Bmsc-UbP; rCG_58046 rno-miR-542-5p 102 115 GCACUGUACUACUAGGGGCUC ||||| ||||| ------CUGAUGCUCCCCU-- Ubl7; Bmsc-UbP; rCG_58046 rno-miR-93 36 60 -GAU--GGA-CGUGCUUGUCGUGAAAC ||| ||| ||| || :|||||| GCUAUUCCUGGCAGGA--GGCACUUG- Ubl7; Bmsc-UbP; rCG_58046 rno-miR-128a 39 62 uuuucuCUGGCC-AAGUG-ACACU |:| || ||| ||||| attcctGGCAGGAGGCACTTGTGA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-128b 39 62 cuuucuCUGGCC-AAGUG-ACACU |:| || ||| ||||| attcctGGCAGGAGGCACTTGTGA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-17 36 60 uGAU--GGACGUGACAUUCGUGAAac ||| |||| :| | |:|||||| gCTATTCCTG-GCAGGAGGCACTTgt Ubl7; Bmsc-UbP; rCG_58046 rno-miR-189 33 56 ugaCUAUAGUCGA--GUCAUCCGUG | |||: || ||| |||||| gaaGCTATT-CCTGGCAGGAGGCAC Ubl7; Bmsc-UbP; rCG_58046 rno-miR-20a 37 60 GAU--GGACGUGAUAUUCGUGAAau ||| |||| :| : |:|||||| CTATTCCTG-GCAGGAGGCACTTgt Ubl7; Bmsc-UbP; rCG_58046 rno-miR-20b 41 60 uGGACGUGAUACU-CGUGAAac |||| :| | || |||||| tCCTG-GC-AGGAGGCACTTgt Ubl7; Bmsc-UbP; rCG_58046 rno-miR-27a 30 63 CGCCUU-GA-----AUCG------GUG-ACACUU |||||| || |:|| ||| |||||| GCGGAAGCTATTCCTGGCAGGAGGCACTTGTGAA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-27b 46 63 CGUCUUGAAUCGGUG-ACACUU ||||: || ||| |||||| GCAGG----AGGCACTTGTGAA Ubl7; Bmsc-UbP; rCG_58046 rno-miR-291-3p 37 59 ccguguguuucaCCUUCGUGAAa |||:|||||| ctattcctggcaGGAGGCACTTg Ubl7; Bmsc-UbP; rCG_58046 rno-miR-292-3p 36 58 ugugaguuuugGACCGCCGUGAA | || ||||||| gctattcctggCAGGAGGCACTT Ubl7; Bmsc-UbP; rCG_58046 rno-miR-324-3p 30 52 gGUCGUCG-U--GGACCCCGUCacc |:| ||| | ||| ||||| gCGGAAGCTATTCCT--GGCAGgag Ubl7; Bmsc-UbP; rCG_58046 rno-miR-325 53 75 uGUGAAUGACUCGUGGAUGAUCc |||||:: ||: || |||| gCACTTGTGAAGTTGCTTCTAGa Ubl7; Bmsc-UbP; rCG_58046 rno-miR-339 33 52 acUCG---AGGACCUCCUGUCCcu ||| |||| |:|||| gaAGCTATTCCT----GGCAGGag Ubl7; Bmsc-UbP; rCG_58046 rno-miR-346 29 52 uCUCCGUCCGUGA-GUCCGUCugu | || || :|:| | ||||| tGCGGAAGCTATTCCTGGCAGgag Ubl7; Bmsc-UbP; rCG_58046 rno-miR-347 31 57 aCC--CGCU--GG---GU-CUCCCUGu || || | || || |||| || cGGAAGCTATTCCTGGCAGGAGGCACt Ubl7; Bmsc-UbP; rCG_58046 rno-miR-363-5p 62 84 UUUAACGUAGCACUA-GGUGGGc ||:|||| || ||| |||||| AAGTTGCTTCTAGATCCCACCCc Ubl7; Bmsc-UbP; rCG_58046 rno-miR-370 35 54 UUGGUCCAAGGUGGGGUCGUCCG |:|:| |||| : ||| |||| AGCTA--TTCC-TGGCAGGAGGC Ubl7; Bmsc-UbP; rCG_58046 rno-miR-378 34 52 uguguccuGGACCUCAGUCCUC ||| | |||||| aagctattCCT---GGCAGGAG Ubl7; Bmsc-UbP; rCG_58046 rno-miR-383 51 78 UCGGUG------UCAGUGGAAGA-CUAGa || ||| |||:: ||||| |||| AGGCACTTGTGAAGTTG-CTTCTAGATCc Ubl7; Bmsc-UbP; rCG_58046 rno-miR-541 58 81 ACAC-UGGUUGUAGUCUUAGGGaa |||| | : :| || :||||| TGTGAAGTTGCTTCTAGATCCCac Ubl7; Bmsc-UbP; rCG_58046 rno-miR-542-5p 96 115 gcacUGUACUACUAGGGGcuc |: ||||| ||||| atatATCTGATGCTCCCCtc- Ubl7; Bmsc-UbP; rCG_58046 rno-miR-93 37 60 GAU--GGA-CGUGCUUGUCGUGAAac ||| ||| ||| || :|||||| CTATTCCTGGCAGGA--GGCACTTgt Ubl7; Bmsc-UbP; rCG_58046 rno-miR-344 71 78 U-------GCCAGUCCGA------------AACC--GAUCUAGU :|| |||| ||| ||||||| GCUAUUCCUGG-CAGGAGGCACUUGUGAAGUUGCUUCUAGAUCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubl7 RAID01668258 rno-miR-383-5p miRNA MIMAT0003114 Ubl7 mRNA 300744 Prediction 0.1828 Ubl7 RAID02220351 rno-miR-138-5p miRNA MIMAT0000844 Ubl7 mRNA 300744 Prediction 0.1828