DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 282844 Rffl ggucgUCGUGGACCCCGUCACc || | || ||||||| uugugAGAAACU--GGCAGUGu 2 18 88 107 [rn4:10:71025273-71025292:-] 0.6088 146 7 -16.18 -0.6083 MIMAT0000604 rno-miR-350 282844 Rffl cacuUUCACAUAC--CCGAA-ACACUu ::||| ||| |||| ||||| acauGGGUGAAUGCCUGCUUCUGUGAu 2 21 190 216 [rn4:10:71025164-71025190:-] 0.5902 127 0 -15.25 -0.1998 MIMAT0000614 rno-miR-151* 282844 Rffl ggaGUUCCUCGGAGUCAGAUc |||||: ||||||| gcaCAAGGG----CAGUCUAu 2 19 72 88 [rn4:10:71025292-71025308:-] 0.6088 145 7 -17.24 -0.3156 MIMAT0004713 rno-miR-25* 282844 Rffl cguuaacGGGCACA--GAGGCGGa || || | ||||||| acguggaCCAGUCUUCCUCCGCCc 2 16 258 281 [rn4:10:71025099-71025122:-] 0.5902 146 7 -20.74 -0.5588 MIMAT0004718 rno-miR-29a* 282844 Rffl gacuugugguuuucuUUAGUCa |||||| uccuccuguuuugucAAUCAGa 2 8 314 335 [rn4:10:71025045-71025066:-] 0.5902 120 6 -9.17 -0.1082 MIMAT0000831 rno-miR-126* 282844 Rffl gcgCAUGGUUUUCAUUA-UUAc ||: |:| :||||| ||| uggGUGGCGACGGUAAUCAAUg 2 19 220 241 [rn4:10:71025139-71025160:-] 0.5902 126 0 -16.53 -0.3796 MIMAT0003121 rno-miR-483 282844 Rffl ugUUCUG-CCCUCCCCUCCU-CACu ||||| ||| |||| ||| cuAAGACUAGGACAAAAGGAGGUGc 2 22 109 133 [rn4:10:71025247-71025271:-] 0.5902 120 0 -17.43 -0.5499 MIMAT0005337 rno-miR-760-3p 282844 Rffl agggguGUCUG-GGUCUCGGc :||:: ||||||| cuguuuUAGGUGGCAGAGCCc 2 15 143 163 [rn4:10:71025217-71025237:-] 0.5902 141 7 -14.34 -0.3339 MIMAT0012838 rno-miR-653 282844 Rffl gucaUCU-CUUACAAAGU-UGUg ||| ||| ||||| ||| ccuaAGACAAAUUUUUCAUACAu 2 18 280 302 [rn4:10:71025078-71025100:-] 0.5902 124 0 -7.59 -0.8445 MIMAT0012845 rno-miR-935 282844 Rffl cgccaucgccuUCGCCAUUGACc ||:|||||||| agcccaaaaccAGUGGUAACUGg 2 13 159 181 [rn4:10:71025199-71025221:-] 0.5902 156 7 -22.27 -0.2411 MIMAT0012853 rno-miR-761 282844 Rffl acACAGUCAAAGU--GGGACGACg ||||| | | :||||||| uuUGUCAAUCAGAAGUCCUGCUG- 2 21 323 345 [rn4:10:71025035-71025057:-] 0.5902 151 7 -18.72 -0.5082 MIMAT0001619 rno-miR-322 282844 Rffl agGUUU--UGUACUUA---AC-GACGAc ||:| |||||::| || ||||| uuCAGAUCACAUGGGUGAAUGCCUGCUu 2 21 182 209 [rn4:10:71025171-71025198:-] 0.5902 122 0 -17.46 -0.3971 MIMAT0000581 rno-miR-338 282844 Rffl agUUGUUUUAGUGACUAC-GACCu :||| |: | |||| |||| agGACAUAGCCCAAGAUGUCUGGg 2 22 31 54 [rn4:10:71025326-71025349:-] 0.6088 121 0 -15.31 -0.2047 MIMAT0000606 rno-miR-7a 282844 Rffl ugUUGUUUUAGUGAUCAGAAGGu |||: :: || |||||||| ggAACGUGG--ACCAGUCUUCCu 2 22 255 275 [rn4:10:71025105-71025125:-] 0.5902 154 7 -16.17 -0.2889 MIMAT0000780 rno-miR-7b 282844 Rffl ugUUGUUUUAGUGUUCAGAAGGu |||: :: || |||||||| ggAACGUGG--ACCAGUCUUCCu 2 22 255 275 [rn4:10:71025105-71025125:-] 0.5902 154 7 -16.17 -0.2889 MIMAT0000782 rno-miR-10a-5p 282844 Rffl guGUUUAAGCCUAGAUGU-CCCAu | ::||| |||| ||| |||| aaCUGGUUCAGAUC-ACAUGGGUg 2 22 176 198 [rn4:10:71025182-71025204:-] 0.5902 131 0 -20.54 -0.7191 MIMAT0000828 rno-miR-124 282844 Rffl ccguAAGUGGCGCACGGAAu ||| :| ||||||| uggcUUCUUC-AGUGCCUUa 2 17 11 29 [rn4:10:71025351-71025369:-] 0.6088 146 7 -19.82 -0.4821 MIMAT0000846 rno-miR-141 282844 Rffl gguagaaaUGGUCUGUCACAAu | | |:||||||| uugugagaAACUGGCAGUGUUc 2 15 88 109 [rn4:10:71025271-71025292:-] 0.5995 150 7 -14.56 -0.3890 MIMAT0000855 rno-miR-153 282844 Rffl cuAGUGAAAACACUGAUACGUu ||: ||| ||||||| gcUCGGGGUUGGUCCUAUGCAc 2 21 54 75 [rn4:10:71025305-71025326:-] 0.6088 148 7 -12.30 -0.1066 MIMAT0000874 rno-miR-200a 282844 Rffl ugUAGCA---AUGGUCUGUCACAAu ||:|| | | |:||||||| cuAUUGUGAGAAACUGGCAGUGUUc 2 21 85 109 [rn4:10:71025271-71025295:-] 0.5995 151 7 -18.36 -0.3860 MIMAT0000885 rno-miR-214 282844 Rffl gaCGGACAGAC-AC-GGACGACa |:| || | | ||||||| uuGUCAAUCAGAAGUCCUGCUG- 2 20 324 345 [rn4:10:71025035-71025056:-] 0.5902 141 7 -16.41 -0.5082 MIMAT0001633 rno-miR-451 282844 Rffl uugagucaUUACCAUUG-CCAAa |:||||||| |||| ccaaaaccAGUGGUAACUGGUUc 2 15 162 184 [rn4:10:71025196-71025218:-] 0.5902 130 0 -18.84 -0.3209 MIMAT0003383 rno-miR-497 282844 Rffl auGUUUGGUGU---CAC--AC-GACGAc ||:|:|||| ||| || ||||| uuCAGAUCACAUGGGUGAAUGCCUGCUu 2 21 182 209 [rn4:10:71025171-71025198:-] 0.5902 126 0 -19.98 -0.4002

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G094202 Rffl Rattus norvegicus 282844 23966833 0 0 R63733; RAT$RFFL_01; Binding factors: Gm98

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rffl RAID00267153 rno-miR-124-3p miRNA MIMAT0000828 Rffl mRNA 282844 Prediction 0.2381 Rffl RAID00790902 rno-miR-7a-5p miRNA MIMAT0000606 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID00804235 rno-miR-3584-5p miRNA MIMAT0017875 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID00834857 rno-miR-7b miRNA MIMAT0000780 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID00969932 rno-miR-3084d miRNA MIMAT0035745 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID01074207 rno-miR-18a-3p miRNA MIMAT0017095 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID01227866 rno-miR-324-3p miRNA MIMAT0000554 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID01351042 rno-miR-141-3p miRNA MIMAT0000846 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID01686444 rno-miR-3084b-3p miRNA MIMAT0035742 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID01924378 rno-miR-10a-5p miRNA MIMAT0000782 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID02513119 rno-miR-497-5p miRNA MIMAT0003383 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID02568883 rno-miR-338-3p miRNA MIMAT0000581 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID02588798 rno-miR-6314 miRNA MIMAT0025047 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID02864890 rno-miR-322-5p miRNA MIMAT0001619 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID03127823 rno-miR-92a-2-5p miRNA MIMAT0017108 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID03432548 rno-miR-214-3p miRNA MIMAT0000885 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID03473516 rno-miR-451-5p miRNA MIMAT0001633 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID03592113 rno-miR-200a-3p miRNA MIMAT0000874 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID03897703 rno-miR-153-3p miRNA MIMAT0000855 Rffl mRNA 282844 Prediction 0.1828 Rffl RAID03934591 rno-miR-3084a-3p miRNA MIMAT0035740 Rffl mRNA 282844 Prediction 0.1828