DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0003207 rno-miR-369-3p 117541 Smu1 uuUCUAGU--UGGUACAUAAUAa ||: || ::|||||||||| ggAGGGCAUGGUCAUGUAUUAUu 2 20 41 63 [rn4:5:58115168-58115190:-] 0.6830 162 7 -17.97 -1.1637 MIMAT0005286 rno-miR-878 117541 Smu1 agaugggucauaccaCAGUACg |||||| uaaguggagggcaugGUCAUGu 2 8 36 57 [rn4:5:58115174-58115195:-] 0.6830 120 6 -15.00 -0.2026 MIMAT0000820 rno-miR-99a 117541 Smu1 guGUUCUAG-CCUAGAUGCCCAa :||| || | | |||||||| aaUAAG-UCAGUAGCUACGGGUu 2 21 103 124 [rn4:5:58115107-58115128:-] 0.4259 157 7 -22.08 -0.4550 MIMAT0000821 rno-miR-99b 117541 Smu1 gcguUCCAGCCA-AGAUGCCCAc | ||| || |||||||| aaauAAGUCAGUAGCUACGGGUu 2 19 102 124 [rn4:5:58115107-58115129:-] 0.4259 157 7 -20.23 -0.4484 MIMAT0000822 rno-miR-100 117541 Smu1 guGUUCAAGCCUAGAUGCCCAa :|||| | | |||||||| aaUAAGUCAGUAGCUACGGGUu 2 21 103 124 [rn4:5:58115107-58115128:-] 0.4259 164 7 -23.14 -0.4550

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101138 Smu1 Rattus norvegicus 117541

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Smu1; rCG_54787 rno-miR-100 103 126 GUGUUCAAGCCUA-GAUGCCCAA- |:||| || | ||||||||| AAUAAG-UCAGUAGCUACGGGUUC Smu1; rCG_54787 rno-miR-103 3 22 AGUAUCGGGACAUGUUACGACGA ||||:| ||||:||| || ---CAGCCUU-UACAGUGCAGCC Smu1; rCG_54787 rno-miR-107 3 22 ACUAUCGGGACAUGUUACGACGA ||||:| ||||:||| || ---CAGCCUU-UACAGUGCAGCC Smu1; rCG_54787 rno-miR-16 1 22 GCGGUUAUAAAUG-CACGACGAU |:||: ||||| |||| || -GUCAGCCUUUACAGUGCAGCC- Smu1; rCG_54787 rno-miR-184 67 88 UGGGAAUAGUCAAGAGGCAGGU |:|| ||| ||| ||||| -ACUUUUUCAUGUCUGCGUCCU Smu1; rCG_54787 rno-miR-20b* 4 21 GUCUUCACG--AGUGUGACGUCA || |:||| ||||| ------AGCCUUUACAGUGCAGC Smu1; rCG_54787 rno-miR-25 1 21 -AGUCUGGCUCUGUUCACGUUAC |||| || ||| |||||: GUCAG-CCUUUACA-GUGCAGC- Smu1; rCG_54787 rno-miR-33 11 36 -GUUACGUUGA-----UGUUACGUG- ||:||||:| :| :||:|| ACAGUGCAGCCAAGGAGC-GUGUACU Smu1; rCG_54787 rno-miR-339 24 53 ACUCGA----GG----ACCUCCUGUCCCU |||| |: ||||||:|| || GGAGCGUGUACUUAAGUGGAGGGCAUGGU Smu1; rCG_54787 rno-miR-343 23 48 AGACC-CGU--GUG------CCUCCCUCU || ||: :|| |||||| --AGGAGCGUGUACUUAAGUGGAGGGC-- Smu1; rCG_54787 rno-miR-347 23 50 ACC-CGCUGGG-------UCUCCCUGU- || ||| : :||||| || AGGAGCGUGUACUUAAGUGGAGGG-CAU Smu1; rCG_54787 rno-miR-365 21 51 UAUUCCUAAAA---------AUC-CCCGUAAU ||||| |:| |||||| -CAAGGAGCGUGUACUUAAGUGGAGGGCAUG- Smu1; rCG_54787 rno-miR-369-3p 41 65 -UUCUAGUU--GGUACAUAAUAA- :|| || :||||||||||| GGAGGGCAUGGUCAUGUAUUAUUU Smu1; rCG_54787 rno-miR-370 17 49 -UUGG-UCCA---AGGUGGGGUCG---UCCG- |:|| ||| | :||: ||: :||| CAGCCAAGGAGCGUGUACUUAAGUGGAGGGCA Smu1; rCG_54787 rno-miR-381 41 61 -CUCUCGAACGGGAACAUAU |||:|| || :| ||||| GGAGGGCAUGGUCAUGUAUU Smu1; rCG_54787 rno-miR-485 1 12 CUUAAGUAGUGCCGGUCGGAGA- |:||||||:| ------------GUCAGCCUUUA Smu1; rCG_54787 rno-miR-9 9 28 AGUAUGUCGAUCUAUUGGUUUCU- |||||: |:||||:|| --UUACAGUGC---AGCCAAGGAG Smu1; rCG_54787 rno-miR-99a 103 126 GUGUUCUAGCCUA-GAUGCCCAA- |:||| || | ||||||||| AAUAAG-UCAGUAGCUACGGGUUC Smu1; rCG_54787 rno-miR-99b 99 125 GCGUUC---CAGCCAA-GAUGCCCAC |:|| ||| || |||||||| UGUAAAUAAGUCAGUAGCUACGGGUU Smu1; rCG_54787 rno-miR-100 103 124 gUGUUCAAGCCUAGAUGCCCAA |:|||| | | ||||||||| aATAAGTCAGTAGCTACGGGTT Smu1; rCG_54787 rno-miR-103 1 21 aguaUCGGGACAUGUUACGACGa ||||:| ||||:||| || -gtcAGCCTT-TACAGTGCAGCc Smu1; rCG_54787 rno-miR-107 1 21 acuaUCGGGACAUGUUACGACGa ||||:| ||||:||| || -gtcAGCCTT-TACAGTGCAGCc Smu1; rCG_54787 rno-miR-16 1 22 gCGGUUAUAAAUG-CACGACGau |:||: ||||| |||| || -GTCAGCCTTTACAGTGCAGCca Smu1; rCG_54787 rno-miR-184 66 87 ugGGAAUAGUCAAGAGGCAGGu |:|| ||| ||| ||||| taCTTTTTCATGTCTGCGTCCt Smu1; rCG_54787 rno-miR-20b* 1 20 gucuUCACGAGUGUGACGUCa || :|:||| ||||| -gtcAGCCTTTACAGTGCAGc Smu1; rCG_54787 rno-miR-25 2 21 AGUCUGGCUCUGUUCACGUuac |||| || || |||||| TCAG-CCTTTAC-AGTGCAgcc Smu1; rCG_54787 rno-miR-33 1 19 guuaCGUUGAUGUUACGUg || :||||:|||| gtcaGCCTTTACAGTGCAg Smu1; rCG_54787 rno-miR-339 30 52 ACUCGAG--GACCUCCUGUCCCu || ||: ||||||:|| || TGTACTTAAGTGGAGGGCATGGt Smu1; rCG_54787 rno-miR-343 26 49 agaCCCGUG----UGCCUCCCucu | |:|| ::|||||| agcGTGTACTTAAGTGGAGGGcat Smu1; rCG_54787 rno-miR-365 20 51 uaUUCCU---AAA--AAU----C-CCCGUAau ||||| | | ||| | |||||| ccAAGGAGCGTGTACTTAAGTGGAGGGCATgg Smu1; rCG_54787 rno-miR-369-3p 42 63 uUCUAGU--UGGUACAUAAUAA ||: || ::||||||||||| gAGGGCATGGTCATGTATTATT Smu1; rCG_54787 rno-miR-370 1 26 uugGUC--CAAGGUGGGGUCG--UCCg ||| || || : |||| ||| -gtCAGCCTTTACAGTGCAGCCAAGGa Smu1; rCG_54787 rno-miR-381 42 60 CUCUCGAACGGGAACAUAu |||:|| || :| ||||| GAGGGCATGGTCATGTATt Smu1; rCG_54787 rno-miR-9 7 26 aguAUGUCGAUCUAUUGGUUUCU |||||: : |:||||:|| cttTACAGT---GCAGCCAAGGA Smu1; rCG_54787 rno-miR-99a 103 124 gUGUUCUAG-CCUAGAUGCCCAA |:||| || | | ||||||||| aATAAG-TCAGTAGCTACGGGTT Smu1; rCG_54787 rno-miR-99b 102 124 gcguUCCAGCCA-AGAUGCCCAc | ||| || |||||||| aaatAAGTCAGTAGCTACGGGTt Smu1; rCG_54787 rno-miR-100 117 124 G---------------------UGUUCAAGCCUAGAUGCCCAA |:|||| | ||||||||| CGUCCUAGCAUAAAACUUGUAAAUAAGUCAGUAGCUACGGGUUC Smu1; rCG_54787 rno-miR-369-3p 56 63 ---------------------UUCUA--GUUGGUACAUAAUAA :||: : :||||||||||| CAAGGAGCGUGUACUUAAGUGGAGGGCAUGGUCAUGUAUUAUUU Smu1; rCG_54787 rno-miR-99a 117 124 G---------------------UGUUCUAGCCUA-GAUGCCCAA |:||| || | ||||||||| CGUCCUAGCAUAAAACUUGUAAAUAAG-UCAGUAGCUACGGGUUC Smu1; rCG_54787 rno-miR-99b 117 124 -----------------GCGUUC---CAGCCAA-GAUGCCCAC :|:|| ||| || |||||||| CGUCCUAGCAUAAAACUUGUAAAUAAGUCAGUAGCUACGGGUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Smu1 RAID00593898 rno-miR-99a-5p miRNA MIMAT0000820 Smu1 mRNA 117541 Prediction 0.1828 Smu1 RAID00938421 rno-miR-99b-5p miRNA MIMAT0000821 Smu1 mRNA 117541 Prediction 0.1828 Smu1 RAID01397374 rno-miR-466c-3p miRNA MIMAT0017287 Smu1 mRNA 117541 Prediction 0.1828 Smu1 RAID01488136 rno-miR-3552 miRNA MIMAT0017813 Smu1 mRNA 117541 Prediction 0.1828 Smu1 RAID01700812 rno-miR-100-5p miRNA MIMAT0000822 Smu1 mRNA 117541 Prediction 0.1828 Smu1 RAID02515548 rno-miR-3583-3p miRNA MIMAT0017874 Smu1 mRNA 117541 Prediction 0.1828