DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 312480 Pcgf1 agagacguccgggacACGAAAcg |||||| auuuuuugaaauaaaUGCUUUua 3 9 68 90 [rn4:4:117292971-117292993:+] 0.5900 120 0 -6.73 -0.4824 MIMAT0000607 rno-miR-7a* 312480 Pcgf1 uacCGUCUGACACUAAACAACa ||:| | | |||| ||| acuGCGG--UUUUAUUUUUUGa 2 20 57 76 [rn4:4:117292960-117292979:+] 0.5900 120 0 -5.84 -0.1238 MIMAT0003162 rno-miR-1* 312480 Pcgf1 cccauguauuucuucAUACACg |||||| ccccucccagauauuUAUGUGa 2 8 30 51 [rn4:4:117292933-117292954:+] 0.5900 120 6 -7.48 -0.1988 MIMAT0003209 rno-miR-363* 312480 Pcgf1 uuuaacguagcacuAGGUGGGc ||||||| gggccaggcuugcuUCCACCCc 2 9 1 22 [rn4:4:117292904-117292925:+] 0.5900 140 7 -16.84 -0.3947 MIMAT0012848 rno-miR-294 312480 Pcgf1 ucuAUCCCGGAG-GUAAAACUc |: ||::|: : |||||| aacUGCGGUUUUAUUUUUUGAa 2 19 56 77 [rn4:4:117292959-117292980:+] 0.5900 121 6 -8.73 -0.3388 MIMAT0000560 rno-miR-326 312480 Pcgf1 ugaccuccuucccGGGUCUcc |||||| ccuucccaccccuCCCAGAua 3 9 22 42 [rn4:4:117292925-117292945:+] 0.5900 120 0 -9.54 -0.1214 MIMAT0004641 rno-miR-330 312480 Pcgf1 cggauucuguguccGGGUCUcu |||||| cccuucccaccccuCCCAGAua 3 9 21 42 [rn4:4:117292924-117292945:+] 0.5900 120 0 -15.12 -0.1179 MIMAT0000792 rno-miR-23a 312480 Pcgf1 ccuuuagggaccguUACACUa |||||| ccucccagauauuuAUGUGAa 2 8 32 52 [rn4:4:117292935-117292955:+] 0.5900 120 6 -10.20 -0.2371 MIMAT0000793 rno-miR-23b 312480 Pcgf1 ccauuagggaccguUACACUa |||||| ccucccagauauuuAUGUGAa 2 8 32 52 [rn4:4:117292935-117292955:+] 0.5900 120 6 -10.20 -0.2371

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055147 Pcgf1 Rattus norvegicus 312480

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Pcgf1; LOC103692167; rCG_56268 rno-miR-20b* 36 66 -GUCUU------CACG--AGUGUGACGUCA- |||| ||| |:| |||||:|| CCAGAUAUUUAUGUGAAAUUA-ACUGCGGUU Pcgf1; LOC103692167; rCG_56268 rno-miR-328 1 9 UGCCUUCCCGUCUCUCCCGGUC- ||||||| ---------------GGGCCAGG Pcgf1; LOC103692167; rCG_56268 rno-miR-363-5p 7 23 UUUAACGUAGCACUAGGUGGGC || |:| ||||||| ----GGC-UUGCU-UCCACCCC Pcgf1; LOC103692167; rCG_56268 rno-miR-20b* 43 64 gucUUCAC--GAGUGUGACGUCA | ||| |:| |||||:|| tttATGTGAAATTA-ACTGCGGT Pcgf1; LOC103692167; rCG_56268 rno-miR-363-5p 1 22 uuuaacguaGCAC-UAGGUGGGc | || ||||||| -gggccaggCTTGCTTCCACCCc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pcgf1 RAID00078724 rno-miR-23a-3p miRNA MIMAT0000792 Pcgf1 mRNA 312480 Prediction 0.1828 Pcgf1 RAID00190927 rno-miR-330-5p miRNA MIMAT0004641 Pcgf1 mRNA 312480 Prediction 0.1828 Pcgf1 RAID02397301 rno-miR-23b-3p miRNA MIMAT0000793 Pcgf1 mRNA 312480 Prediction 0.1828 Pcgf1 RAID04001770 rno-miR-326-3p miRNA MIMAT0000560 Pcgf1 mRNA 312480 Prediction 0.1828