DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 29534 Pxmp3 acAACGUCGCGAAGUACAAa || :| | ||||||| ucUUAUAAAUCCUCAUGUUa 2 19 171 190 [rn4:2:98378562-98378581:+] 0.5501 146 7 -6.51 -1.1862 MIMAT0000550 rno-miR-323 29534 Pxmp3 ucuccagcuggcacAUUACAc |||||| ccuaauacaauuuuUAAUGUc 2 8 201 221 [rn4:2:98378592-98378612:+] 0.5501 120 6 -2.91 -0.1971 MIMAT0000594 rno-miR-345-5p 29534 Pxmp3 cgugaccugauccCCAGUCgu |||||| cuucauagaaaaaGGUCAGac 3 9 275 295 [rn4:2:98378666-98378686:+] 0.5501 120 0 -11.64 -0.1588 MIMAT0000614 rno-miR-151* 29534 Pxmp3 ggaGUUCCU-CGGAGUC-AGAUc |||| | ||||| |||| uucCAAGCACAACUCAGUUCUAa 2 19 120 142 [rn4:2:98378511-98378533:+] 0.5501 121 0 -15.17 -0.7835 MIMAT0004717 rno-miR-29b-2* 29534 Pxmp3 gauucggUGGU-ACACUUUGGUc |:|| || ||||||| aguucuaAUCACUG-GAAACCAa 2 16 135 156 [rn4:2:98378526-98378547:+] 0.5501 148 7 -16.36 -0.6967 MIMAT0000831 rno-miR-126* 29534 Pxmp3 gcgcaugguuuucaUUAUUAc |||||| uuuuuaaugucaagAAUAAUg 2 8 211 231 [rn4:2:98378602-98378622:+] 0.5501 120 6 -9.84 -0.1659 MIMAT0004732 rno-miR-135a* 29534 Pxmp3 aaAGUACCGAAGGUAGGGAUgu |:|| :||: ||||||| ugUUAU-UUUUUGAUCCCUAau 3 21 186 206 [rn4:2:98378577-98378597:+] 0.5501 138 0 -14.03 -0.1619 MIMAT0005446 rno-miR-219-2-3p 29534 Pxmp3 uguCUACAGGUCGGUGUUAAGa ||| |:| :||||||: uuuGAUCCCUA-AUACAAUUUu 2 20 194 214 [rn4:2:98378585-98378605:+] 0.5501 133 0 -11.25 -0.1617 MIMAT0000894 rno-miR-291a-5p 29534 Pxmp3 ucucucccgGAGGUGAAACUAc :| : :|||||| auccucaugUUAUUUUUUGAUc 2 14 179 200 [rn4:2:98378570-98378591:+] 0.5501 125 6 -9.74 -0.1227 MIMAT0003113 rno-miR-489 29534 Pxmp3 cgacgGUAUAUACACUACAGUaa || || | | |||||| uaauaCA-AUUUUUAAUGUCAag 3 19 203 224 [rn4:2:98378594-98378615:+] 0.5501 132 0 -5.31 -0.2168 MIMAT0003121 rno-miR-483 29534 Pxmp3 uguucugcccuccCCUCCUCACu | ||||||| uagguggcuuuuaGCAGGAGUGu 2 11 75 97 [rn4:2:98378466-98378488:+] 0.5501 142 7 -18.88 -0.1089 MIMAT0003177 rno-miR-541 29534 Pxmp3 ucacacugguUGUAGUCUUAGGGAa |: |: :|||||| uccucauguuAUUUUUUGAUCCCUa 2 16 180 204 [rn4:2:98378571-98378595:+] 0.5501 127 6 -10.36 -0.6015 MIMAT0003195 rno-miR-376b-5p 29534 Pxmp3 auugguaucuuccuUAUAGGUg :|||||| gaggaaaguguauuGUAUCCAa 2 9 20 41 [rn4:2:98378411-98378432:+] 0.5501 124 6 -10.58 -0.1473 MIMAT0003382 rno-miR-664 29534 Pxmp3 auccgaccccuCA-UUUACUUAu || |:|||||| uggaaaauuuuGUCAGAUGAAUa 2 12 230 252 [rn4:2:98378621-98378643:+] 0.5501 130 6 -10.08 -0.1504 MIMAT0005333 rno-miR-742 29534 Pxmp3 aaAUGGGUUGUA-CCACCGAAAg |::| ::| ||||||||| agUGUCAUCUGUAGGUGGCUUUu 2 21 64 86 [rn4:2:98378455-98378477:+] 0.5501 151 7 -17.50 -0.2317 MIMAT0012826 rno-miR-220 29534 Pxmp3 uccAGAGACUGU-GACA-CCACc || || || |||| |||| ucuUCAGUGUCAUCUGUAGGUGg 2 19 59 81 [rn4:2:98378450-98378472:+] 0.5501 121 0 -17.87 -0.4639 MIMAT0012827 rno-miR-1224 29534 Pxmp3 gaggUGGAGGGGUCAGGAGUg |:||: : | |||||| gagaAUCUUAUAAAUCCUCAu 2 18 166 186 [rn4:2:98378557-98378577:+] 0.5501 125 6 -13.70 -0.1718 MIMAT0012843 rno-miR-876 29534 Pxmp3 acCACUAAG-UGUC------UCUUUAGGu ||||||| | || | |||||| aaGUGAUUCUAGAGAAUCUUAUAAAUCCu 2 21 155 183 [rn4:2:98378546-98378574:+] 0.5501 122 6 -20.48 -0.1003 MIMAT0012848 rno-miR-294 29534 Pxmp3 ucuaucccggaggUAAAACuc |||||| agaauaauggaaaAUUUUGuc 3 9 223 243 [rn4:2:98378614-98378634:+] 0.5501 120 0 -5.61 -0.1029 MIMAT0000842 rno-miR-136 29534 Pxmp3 agGUAGUAGUUUUGUUUACCUca :| ::||||:| |||||| uuUAAUGUCAAGAAUAAUGGAaa 3 22 213 235 [rn4:2:98378604-98378626:+] 0.5501 145 0 -12.77 -0.2825 MIMAT0000888 rno-miR-218 29534 Pxmp3 uguaccaaucuaGUUCGUGUu |||||||| ucucuuccuuucCAAGCACAa 2 10 111 131 [rn4:2:98378502-98378522:+] 0.5501 145 7 -12.96 -0.8379 MIMAT0005314 rno-miR-425 29534 Pxmp3 aguugcccucacuAG-CACAGUAa || ||||||| gaauucgucaucuUCAGUGUCAUc 2 11 49 72 [rn4:2:98378440-98378463:+] 0.5501 141 7 -11.65 -0.3989

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055142 Pex2 Rattus norvegicus 29534

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pex2 RAID00108316 rno-miR-218a-5p miRNA MIMAT0000888 Pex2 mRNA 29534 Prediction 0.1828 Paf1 RAID00211990 rno-miR-93-5p miRNA MIMAT0000817 Paf1 mRNA 361531 Prediction 0.1828 Paf1 RAID00427016 rno-miR-15b-5p miRNA MIMAT0000784 Paf1 mRNA 361531 Prediction 0.1828 Paf1 RAID00544954 rno-miR-18a-3p miRNA MIMAT0017095 Paf1 mRNA 361531 Prediction 0.1828 Paf1 RAID00595287 rno-miR-21-3p miRNA MIMAT0004711 Paf1 mRNA 361531 Prediction 0.1828 Paf1 RAID00632713 rno-miR-291a-3p miRNA MIMAT0000895 Paf1 mRNA 361531 Prediction 0.1828 Paf1 RAID00751543 rno-miR-195-5p miRNA MIMAT0000870 Paf1 mRNA 361531 Prediction 0.1828 Pex2 RAID00892200 rno-miR-33-3p miRNA MIMAT0017104 Pex2 mRNA 29534 Prediction 0.1828 Paf1 RAID01125824 rno-miR-20a-5p miRNA MIMAT0000602 Paf1 mRNA 361531 Prediction 0.1828 Paf1 RAID02023149 rno-miR-497-5p miRNA MIMAT0003383 Paf1 mRNA 361531 Prediction 0.1828 Pex2 RAID02067146 rno-miR-136-5p miRNA MIMAT0000842 Pex2 mRNA 29534 Prediction 0.1828 Pex2 RAID02196494 rno-miR-425-5p miRNA MIMAT0005314 Pex2 mRNA 29534 Prediction 0.1828 Pex2 RAID02307820 rno-miR-29b-5p miRNA MIMAT0004717 Pex2 mRNA 29534 Prediction 0.1828 Paf1 RAID02377144 rno-miR-322-5p miRNA MIMAT0001619 Paf1 mRNA 361531 Prediction 0.1828 Pex2 RAID02400774 rno-miR-377-3p miRNA MIMAT0003123 Pex2 mRNA 29534 Prediction 0.1828 Paf1 RAID02447652 rno-miR-20b-5p miRNA MIMAT0003211 Paf1 mRNA 361531 Prediction 0.1828 Pex2 RAID02501343 rno-miR-3544 miRNA MIMAT0017798 Pex2 mRNA 29534 Prediction 0.1828 Paf1 RAID03054107 rno-miR-3120 miRNA MIMAT0017900 Paf1 mRNA 361531 Prediction 0.1828 Paf1 RAID03131035 rno-miR-17-5p miRNA MIMAT0000786 Paf1 mRNA 361531 Prediction 0.1828 Paf1 RAID03414329 rno-miR-106b-5p miRNA MIMAT0000825 Paf1 mRNA 361531 Prediction 0.1828 Paf1 RAID03600459 rno-miR-431 miRNA MIMAT0001626 Paf1 mRNA 361531 Prediction 0.1828 Pex2 RAID03904188 rno-miR-214-5p miRNA MIMAT0017159 Pex2 mRNA 29534 Prediction 0.1828