DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000591 rno-miR-343 282843 Sorbs3 agaccCGUG-UG-CCUCCCUCu |||| |: |||||||| caguaGCACUAUGGGAGGGAGa 2 16 46 67 [rn4:15:50580198-50580219:-] 0.6456 153 7 -25.30 -0.2821 MIMAT0005287 rno-miR-879 282843 Sorbs3 ccgaaucucGAUAUUCGGAGa || ||||||| caacuuuucCUCCAAGCCUCc 2 13 128 148 [rn4:15:50580117-50580137:-] 0.6456 144 7 -13.99 -0.4979 MIMAT0012825 rno-miR-105 282843 Sorbs3 ugGUGUCUGUAGACUCG-UGAAc ::|||| | | ||| |||| ucUGCAGAAACCCCAGCAACUUu 2 21 112 134 [rn4:15:50580131-50580153:-] 0.6456 124 0 -12.91 -0.5487 MIMAT0012831 rno-miR-544 282843 Sorbs3 cucgaacgauuuuuACGUCUUa ||||||| augcucccagcuucUGCAGAAa 2 9 100 121 [rn4:15:50580144-50580165:-] 0.6456 140 7 -11.03 -0.6715 MIMAT0012837 rno-miR-632 282843 Sorbs3 aggccguccUUUGUCUGUg | ||||||| gccccucaaAUACAGACAu 2 11 214 232 [rn4:15:50580033-50580051:-] 0.6456 142 7 -13.02 -1.1169 MIMAT0000817 rno-miR-93 282843 Sorbs3 gauGGACGUGCUU---GUCG-UGAAAc :||||| || |||| ||||| gcuUCUGCAGAAACCCCAGCAACUUUu 2 21 109 135 [rn4:15:50580130-50580156:-] 0.6456 127 0 -19.18 -0.3626 MIMAT0003379 rno-miR-378 282843 Sorbs3 ggAAGACUGAG-GUUCAG-GUCa ||| || | |||||| ||| gaUUCCCACCCGCAAGUCACAGg 2 20 166 188 [rn4:15:50580077-50580099:-] 0.6456 126 0 -15.37 -0.3692

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Sorbs3; rCG_36878 rno-let-7b 119 149 -UUGGUG-UGUUGGAU--GA----UGGAGU |||| :||||:| || :|||| AAACCCCAGCAACUUUUCCUCCAAGCCUCC Sorbs3; rCG_36878 rno-miR-1 172 196 AUGUGUGA--AGAAA-UGUAAGGU || |:| || :|||||| CACCCGCAAGUCACAGGCAUUCCU Sorbs3; rCG_36878 rno-miR-106b 111 136 UAGACGUGACA---GUCGU-GAAAU |||||| ||||| |||| UUCUGCAGAAACCCCAGCAACUUUU Sorbs3; rCG_36878 rno-miR-127 21 48 -UCGGUU-CG---AG-UCUGCCUAGGCU |||||| | || :| ||: | GAGCCAACGAGGAUCGGGUGGGGAGCA- Sorbs3; rCG_36878 rno-miR-128a 28 61 UUUUCUCUGGCCAA------------GUGACACU- :|| ||:||| |||| ||: -CGAG-GAUCGGGUGGGGAGCAGUAGCACUAUGGG Sorbs3; rCG_36878 rno-miR-129 101 123 UCGUUCGGGUCU--GGCGUUUUUC || ||||| |:|||:||| UGCU--CCCAGCUUCUGCAGAAAC Sorbs3; rCG_36878 rno-miR-133a 12 50 -UGUCG-ACCAA-------------CUUCCCCUGGUU- :|||: ||| | ||||| ||: GGCAGUAUGGAGCCAACGAGGAUCGGGUGGGGAGCAGU Sorbs3; rCG_36878 rno-miR-133b 21 50 AUCGA-----CCAA--CUUCCCCUGGUU- ||| || | ||||| ||: GAGCCAACGAGGAUCGGGUGGGGAGCAGU Sorbs3; rCG_36878 rno-miR-134 155 188 -GGGAGACCAGU-------UGG----UCAGUGU- ||| |||| | ||| ||||||| UCCC-CUGGACUGAUUCCCACCCGCAAGUCACAG Sorbs3; rCG_36878 rno-miR-135b 51 75 -GUG-UAUCCUUA--CUUUUCGGUAU ||| ||:|||: ||:|:||| GCACUAUGGGAGGGAGAGAGGCCC-- Sorbs3; rCG_36878 rno-miR-136 23 45 AGGUAGUAGUUUUGUUUACCUCA ||| |: :| |:::|||:| GCCAACGAGGAU-CGGGUGGGGA Sorbs3; rCG_36878 rno-miR-150 36 69 GUGACCA--UGUU---------CCCAACCCUCU- : ||| :||: ||| |||||| GGGUGGGGAGCAGUAGCACUAUGGGA-GGGAGAG Sorbs3; rCG_36878 rno-miR-152 137 169 -GGGUUCA-AGA-----CAGU--ACGUGACU- :||||| || ||| || ||||| CUCCAAGCCUCCUUGAAGUCCCCUGGACUGAU Sorbs3; rCG_36878 rno-miR-200b 1 21 CAGUAGUAAUGGU-CCGUCAUAAU | :|| ||| |||||||| AUGGUCU---CCAUGGCAGUAUG- Sorbs3; rCG_36878 rno-miR-200c 3 21 GGUAGUAAUGG-GCCGUCAUAAU :|| || :|||||||| -GGUCU---CCAUGGCAGUAUG- Sorbs3; rCG_36878 rno-miR-206 170 196 -GGUGUGUGA--AGGAA-UGUAAGGU |||| |:| || :|||||| CCCACCCGCAAGUCACAGGCAUUCCU Sorbs3; rCG_36878 rno-miR-207 35 74 UUCCCUCCUCUCGG--------------UCCUCU--UCG- ||| ||:|||| :||||| :|| -CGGGUGGGGAGCAGUAGCACUAUGGGAGGGAGAGAGGCC Sorbs3; rCG_36878 rno-miR-20b* 91 120 -GUCUUC---ACGAGUGU----GACGUCA |||:| ||||| || |||||| CCAGGACCUAUGCUCCCAGCUUCUGCAGA Sorbs3; rCG_36878 rno-miR-221 19 54 -CUUUGG---------GUCGUCUGUUA--CAUCGA |:|:|| |:| |: :| ||||| UGGAGCCAACGAGGAUCGGGUGGGGAGCAGUAGCA Sorbs3; rCG_36878 rno-miR-24 149 175 GACA--AGGACGACUUGACUC--GGU- || ||| |||:||||| ||| UUGAAGUCCC-CUGGACUGAUUCCCAC Sorbs3; rCG_36878 rno-miR-296 40 77 UGUCCUAA-------------CUCCC-C-C-CCGGGA- :||| ||||| | | |||||| -GGGGAGCAGUAGCACUAUGGGAGGGAGAGAGGCCCUC Sorbs3; rCG_36878 rno-miR-298 61 85 -CCUUCUUGUCGGGAGGAGACGG- ||:|||: :||||||| || AGGGAGAGAGGCCCUCCAUAUCCU Sorbs3; rCG_36878 rno-miR-320 212 241 AAGCGGGAGAGUUG--------GGUCGAAAA ||||| ||||| :| ||||| -CCGCCC-CUCAAAUACAGACAUCUGCUUUC Sorbs3; rCG_36878 rno-miR-324-5p 22 48 UGUGGUUACG---GGAU--CCCCUACGC :|||| | :| ||||| || -AGCCAACGAGGAUCGGGUGGGGA-GCA Sorbs3; rCG_36878 rno-miR-327 205 224 UGGGAGUA-CGGGGAGUUCC ||:||| ||||||||| CCCUUCACCGCCCCUCAAA- Sorbs3; rCG_36878 rno-miR-328 55 76 -UGCCUUCCCGUCUCUCCCGGUC |:||:|||| ||||||| || UAUGGGAGGG-AGAGAGGCCCU- Sorbs3; rCG_36878 rno-miR-336 35 69 UCUGAUCU------------AUACCUUCCCACU- |: |:|: |||||:|||| || CGGGUGGGGAGCAGUAGCACUAUGGGAGGGAGAG Sorbs3; rCG_36878 rno-miR-339 20 46 ACUCGAGGACCUCCUG-----UCCCU- |||| | |||||: :|||| GGAGC-CAACGAGGAUCGGGUGGGGAG Sorbs3; rCG_36878 rno-miR-340 36 67 -CCGAUAUU--UCAUUG----ACUCUGCCU- ||: :| ||||:| ||:|| ||| GGGUGGGGAGCAGUAGCACUAUGGGAGGGAG Sorbs3; rCG_36878 rno-miR-343 35 69 AGACCCG-----------UGUG----CCUCCCUCU- |||: :||| ||||||||| --CGGGUGGGGAGCAGUAGCACUAUGGGAGGGAGAG Sorbs3; rCG_36878 rno-miR-346 39 71 -UCUC-CGUC--CGUGAG----UCCGUCUGU- :|:| |||| ||||| ||| ||| | UGGGGAGCAGUAGCACUAUGGGAGGGAGAGAG Sorbs3; rCG_36878 rno-miR-347 35 69 ACCCGC------------UGGG--UCUCCCUGU- |||:| ||: :|||||| | CGGGUGGGGAGCAGUAGCACUAUGGGAGGGAGAG Sorbs3; rCG_36878 rno-miR-34a 197 218 -UUGUUGGUCGAUUCUGUGACGGU :|||:|| || ||| ||| UGACAGCCCCCUU---CACCGCCC Sorbs3; rCG_36878 rno-miR-34c 199 218 CGUUAGUCGAUUGAUGUGACGGA |||| || ||| ||| ----ACAGCCCCCUUCACCGCCC Sorbs3; rCG_36878 rno-miR-361 153 172 -CAUGGGGACCU--CUAAGACUAUU || |||||||| ||||| AGU-CCCCUGGACUGAUUCC----- Sorbs3; rCG_36878 rno-miR-363-5p 159 179 UUUAACGUAGCACUA--GGUGGGC- || | | |||| ||||||| ---CUGGA-C-UGAUUCCCACCCGC Sorbs3; rCG_36878 rno-miR-370 105 131 UUGGUCCAAGG------UGGGGUCGUCCG |||| |||: ||||||||| -CCCAGCUUCUGCAGAAACCCCAGCAA-- Sorbs3; rCG_36878 rno-miR-378 26 47 UGUG-UCCUGGACCUCAGUCCUC- || ||||:| || || :|||| -AACGAGGAUC-GG-GUGGGGAGC Sorbs3; rCG_36878 rno-miR-412 9 45 -UGCCGAUCA-------------CCUGGUCCACUUCA |:||| ||| |||:|:|||| | CAUGGC-AGUAUGGAGCCAACGAGGAUCGGGUGGGGA Sorbs3; rCG_36878 rno-miR-422b 157 189 CGGAA--GACUGAGG-------UUCAG-GUCA ||| ||||:||| ||||| ||| CCCUGGACUGAUUCCCACCCGCAAGUCACAGG Sorbs3; rCG_36878 rno-miR-429 1 21 UGCCGUAAUGGU-CUGUCAUAAU |:||: ||| |:|||||| AUGGUCU--CCAUGGCAGUAUG- Sorbs3; rCG_36878 rno-miR-483 26 51 -UGUUCU--GCCCUCCCCUCCUCACU ||:||: |||| |||||| ||| AACGAGGAUCGGGUGGGGAGCAGUA- Sorbs3; rCG_36878 rno-miR-92 29 52 GUCC-GGCCCUGUUCACGUUAU- ||| :|||| ::| |||:|| GAGGAUCGGGUGGGGAGCAGUAG Sorbs3; rCG_36878 rno-miR-93 111 136 GAUGGACGUGCUU----GUCG-UGAAAC :||||| ||| |||| ||||| --UUCUGCA-GAAACCCCAGCAACUUUU Sorbs3; rCG_36878 rno-let-7b 120 140 UUGGUGU-GUUGGAUGAUGGAGu |||| || ||||: :| |||| AACCCCAGCAACT--TTTCCTCc Sorbs3; rCG_36878 rno-miR-1 174 195 auGUGUGAAG-AAAUGUAAGGu |:|| || :|||||| ccCGCAAGTCACAGGCATTCCt Sorbs3; rCG_36878 rno-miR-127 22 38 UCGGUUCGAGUCUGCCUAGGCu |||||| | || ||||| | AGCCAA---C-GA-GGATCGGg Sorbs3; rCG_36878 rno-miR-128a 37 59 uuuuCUCUGGCCA-AGUGACACu |:|| | || |||| || ggtgGGGAGCAGTAGCACTATGg Sorbs3; rCG_36878 rno-miR-129 99 122 ucguucGGGUC--UGGCGUUUUUc ||||| |:|||:||| tatgctCCCAGCTTCTGCAGAAAc Sorbs3; rCG_36878 rno-miR-133a 24 48 uGUCG-ACCAA--CUUCCCCUGGUu || | || | |: ||||| || cCAACGAGGATCGGGTGGGGAGCAg Sorbs3; rCG_36878 rno-miR-133b 26 48 aucgaCCAA--CUUCCCCUGGUu || | |: ||||| || aacgaGGATCGGGTGGGGAGCAg Sorbs3; rCG_36878 rno-miR-134 157 186 GGGA---GACCA---GUUG--G-UCAGUGU |||| ||| | || | | ||||||| CCCTGGACTGATTCCCACCCGCAAGTCACA Sorbs3; rCG_36878 rno-miR-135b 52 76 GUG-UAUCCU--UACUUUUCGGUAu ||| ||:||| : ||:|:||| | CACTATGGGAGGGAGAGAGGCCCTc Sorbs3; rCG_36878 rno-miR-136 1 24 agguAGUAGUUUUGU-UUACCUCa || || ::|| |||||| atggTCTCCATGGCAGTATGGAGc Sorbs3; rCG_36878 rno-miR-150 27 46 gugaCCAUGUUCCCAACCCUCu || | |||| ||||| acgaGGATC--GGGTGGGGAGc Sorbs3; rCG_36878 rno-miR-152 138 167 gGGUUC--AAGA----CA--GUACGUGACU ||||| | || || | || ||||| tCCAAGCCTCCTTGAAGTCCCCTGGACTGA Sorbs3; rCG_36878 rno-miR-200b 1 21 cagUAGUAAUGGU-CCGUCAUAau || :| ||| |||||||| ---ATGGTCTCCATGGCAGTATgg Sorbs3; rCG_36878 rno-miR-200c 1 21 ggUAGUAAUGG-GCCGUCAUAau || :| || :|||||||| --ATGGTCTCCATGGCAGTATgg Sorbs3; rCG_36878 rno-miR-206 171 195 GGUGUGUG--AAG-GAAUGUAAGGu |||| |:| || | :|||||| CCACCCGCAAGTCACAGGCATTCCt Sorbs3; rCG_36878 rno-miR-207 25 49 uuccCUCCU--CUCGGUCCUCUUCg ||||| |:|: :|||| || caacGAGGATCGGGTGGGGAGCAGt Sorbs3; rCG_36878 rno-miR-207 56 72 UUCCCUCCUCUCGGUCCUCUUCG | |||||| || ||||:|| ATGGGAGG-GA-----GAGAGGC Sorbs3; rCG_36878 rno-miR-20b* 92 119 GUCUU---CACGAGUG----UGACGUCa |||:| ||||| | |||||| CAGGACCTATGCTCCCAGCTTCTGCAGa Sorbs3; rCG_36878 rno-miR-221 3 25 cuuugGGU--CGUCUGUUACAUCGa ||| |||| ||| ||| ggtctCCATGGCAG--TATGGAGCc Sorbs3; rCG_36878 rno-miR-24 152 171 gaCAAGGACGACUUGACUCGGu || || |||:||||| :| aaGTCCC--CTGGACTGATTCc Sorbs3; rCG_36878 rno-miR-296 56 75 UGUCCUAACUCCCCCCCGGGA |::||| || | | |||||| ATGGGAGGGA-GAGAGGCCCT Sorbs3; rCG_36878 rno-miR-296 27 47 UG-UCCUAACUCCCCCCCggga || ||||| | || |||| ACGAGGATCG-GGTGGGGagca Sorbs3; rCG_36878 rno-miR-298 62 89 CCUUCUUGUCGGG------AGGAGACGG ||:|||: :|||| ||||| || GGGAGAGAGGCCCTCCATATCCTCCTCC Sorbs3; rCG_36878 rno-miR-320 211 240 aaGCGGGAGAGU-------UG-GGUCGAAAa ||||| |||| || :| ||||| acCGCCC-CTCAAATACAGACATCTGCTTTc Sorbs3; rCG_36878 rno-miR-324-3p 45 69 gGUCGUCGUGG-ACC--CCGUCACc |||:|||||: ||| || || | gCAGTAGCACTATGGGAGGGAGAGa Sorbs3; rCG_36878 rno-miR-324-5p 42 65 ugUGGUUA-CGGGAUCCCCUACgc | ||:| || ||| |||| | ggAGCAGTAGCACTATGGGAGGga Sorbs3; rCG_36878 rno-miR-327 205 224 uGGGAGU-ACGGGGAGUUcc ||:||| ||||||||| cCCTTCACCGCCCCTCAAat Sorbs3; rCG_36878 rno-miR-328 56 76 UGCCUUCCCGUCUCUCCCGGuc |:||:|||| ||||||| || ATGGGAGGG-AGAGAGGCCCtc Sorbs3; rCG_36878 rno-miR-336 44 67 UC-UGAUC-U-AUACCUUCCCACU || | ||| | |||||:|||| || AGCAGTAGCACTATGGGAGGGAGA Sorbs3; rCG_36878 rno-miR-337 28 50 uuUCCGUAGUAUA-UCCUCGACuu ||| |||: :| :||||| | cgAGG-ATCGGGTGGGGAGCAGta Sorbs3; rCG_36878 rno-miR-340 12 38 CCG--AUAUUUC-AUUGACUCU--GCCu ||| |||::|| ||| |||: ||| GGCAGTATGGAGCCAAC-GAGGATCGGg Sorbs3; rCG_36878 rno-miR-343 46 67 agaccCGUG-UG-CCUCCCUCU |||| |: ||||||||| cagtaGCACTATGGGAGGGAGA Sorbs3; rCG_36878 rno-miR-346 40 69 uCUC-CGUC--CGUGA----GUCCGUCUgu |:| |||| ||||| ||| ||| gGGGAGCAGTAGCACTATGGGAGGGAGAga Sorbs3; rCG_36878 rno-miR-347 39 67 ACCCGCUGG-----GU------CUCCCUgu |||| || | || |||||| TGGG-GAGCAGTAGCACTATGGGAGGGAga Sorbs3; rCG_36878 rno-miR-34a 198 217 uUGUUGGUCGAUUCUGUGACGGu |||:|| || ||| ||| gACAGCCCCCT---TCACCGCCc Sorbs3; rCG_36878 rno-miR-34c 195 217 cguuaGUCGAUUGAUGUGACGGa |||| || ||| ||| tttgaCAGCCCCCTTCACCGCCc Sorbs3; rCG_36878 rno-miR-361 154 170 CAUGGGGACCUCUAAGACUAuu || |||||||| ||||| GT-CCCCTGGA----CTGATtc Sorbs3; rCG_36878 rno-miR-363-5p 156 177 uuuaacguagcacuaGGUGGGC ||||||| cccctggactgattcCCACCCG Sorbs3; rCG_36878 rno-miR-370 104 132 uuGGUCCAAG--G----UGGGGUCGUccg |||| ||| | ||||||||| tcCCAGCTTCTGCAGAAACCCCAGCAact Sorbs3; rCG_36878 rno-miR-378 25 45 ugUG-UCCUGGACCUCAGUCCUC || ||||:| |:|| :|||| caACGAGGATC--GGGTGGGGAG Sorbs3; rCG_36878 rno-miR-412 18 44 UGCC---GAU-CACCUGGUCCACUUCa |:|| | | | |||:|:||||::| ATGGAGCCAACGAGGATCGGGTGGGGa Sorbs3; rCG_36878 rno-miR-422b 165 188 cggAAGACUGAG-GUUCAG-GUCa ||| || | |||||| ||| tgaTTCCCACCCGCAAGTCACAGg Sorbs3; rCG_36878 rno-miR-422b 135 160 cGGAAG-ACUGAGG---UUCAGGuca ||| | | |||| |||||| tCCTCCAAGCCTCCTTGAAGTCCcct Sorbs3; rCG_36878 rno-miR-429 1 21 UGCCGUAAUGGU-CUGUCAUAau |:||: | ||| |:|||||| ATGGTCT--CCATGGCAGTATgg Sorbs3; rCG_36878 rno-miR-483 27 51 UGUUCU--GCCCUCCCCUCCUCAcu ||:||: |||| |||||| ||| ACGAGGATCGGGTGGGGAGCAGTag Sorbs3; rCG_36878 rno-miR-93 110 135 GAUGGACGUGCUU----GUCG-UGAAAc || :||||| ||| |||| ||||| CT-TCTGCA-GAAACCCCAGCAACTTTt Sorbs3; rCG_36878 rno-miR-343 60 67 ---------AGACCCG-----------UGUG----CCUCCCUCU || |||: :||| ||||||||| CAACGAGGAUC-GGGUGGGGAGCAGUAGCACUAUGGGAGGGAGAG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sorbs3 RAID00393254 rno-miR-632 miRNA MIMAT0012837 Sorbs3 mRNA 282843 Prediction 0.1828 Sorbs3 RAID00770279 rno-miR-6322 miRNA MIMAT0025061 Sorbs3 mRNA 282843 Prediction 0.1828 Sorbs3 RAID01925456 rno-miR-764-3p miRNA MIMAT0017370 Sorbs3 mRNA 282843 Prediction 0.1828 Sorbs3 RAID02067257 rno-miR-3573-5p miRNA MIMAT0017856 Sorbs3 mRNA 282843 Prediction 0.1828 Sorbs3 RAID02479037 rno-miR-423-5p miRNA MIMAT0017305 Sorbs3 mRNA 282843 Prediction 0.1828 Sorbs3 RAID02919507 rno-miR-378a-3p miRNA MIMAT0003379 Sorbs3 mRNA 282843 Prediction 0.1828 Sorbs3 RAID03068587 rno-miR-3541 miRNA MIMAT0017795 Sorbs3 mRNA 282843 Prediction 0.1828 Sorbs3 RAID03358315 rno-miR-343 miRNA MIMAT0000591 Sorbs3 mRNA 282843 Prediction 0.1828 Sorbs3 RAID03689714 rno-miR-93-5p miRNA MIMAT0000817 Sorbs3 mRNA 282843 Prediction 0.1828