DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004646 rno-miR-338* 25664 Pparg gugagucgugguCCUAUAACAa | ||||||| gaucuauuuuauGCAUAUUGUu 2 11 130 151 [rn4:4:151617260-151617281:+] 0.7303 142 7 -7.29 -1.2275 MIMAT0004708 rno-miR-9* 25664 Pparg ugaaagccaauagaUCGAAAUa ||:|||| auuuaaaaacaaaaAGUUUUAg 2 9 103 124 [rn4:4:151617233-151617254:+] 0.7303 124 0 -4.22 -0.2039 MIMAT0004714 rno-miR-26b* 25664 Pparg cucggUUCAUUACCUCUUGUcc |||| | |||||| acaaaAAGU--UUUAGAACAug 3 18 111 130 [rn4:4:151617241-151617260:+] 0.7303 126 0 -10.46 -0.4589 MIMAT0004716 rno-miR-28* 25664 Pparg agguccUCGAGUGUUAGAUCAc || ||::||||| | aguuuuAGAACAUGAUCUAUUu 2 17 117 138 [rn4:4:151617247-151617268:+] 0.7303 124 0 -7.18 -0.1216 MIMAT0005446 rno-miR-219-2-3p 25664 Pparg ugUCUACAGGUCGGUGUUAAGa ||| | || ::||||||: aaAGA--UACAUUUACAAUUUa 2 21 155 174 [rn4:4:151617285-151617304:+] 0.7303 137 0 -10.93 -0.7957 MIMAT0000899 rno-miR-297 25664 Pparg guACGUAU-GUACGUG--UGUAUGUa |||||| ::| :|: | ||||| uaUGCAUAUUGUUUAUAAAGAUACAu 2 22 139 164 [rn4:4:151617269-151617294:+] 0.7303 127 0 -15.75 -0.1925 MIMAT0003174 rno-miR-540 25664 Pparg ggUCCUAGCUGGAGACUGga :||| | |||||| agGGGAAAAAAAUCUGACac 3 19 58 77 [rn4:4:151617188-151617207:+] 0.6522 126 0 -13.51 -0.2466 MIMAT0003197 rno-miR-376a* 25664 Pparg gagUAUCUUCCUCUUAGAUGg ||| | | |||:||| aagAUACAUUUACAAUUUACu 2 19 156 176 [rn4:4:151617286-151617306:+] 0.7303 134 0 -5.49 -0.2180 MIMAT0005289 rno-miR-881 25664 Pparg agAUAAGUCUUUACGGUGUCAa |||| | || | ||||| | aaUAUUAAAAAUUACCACACU- 2 21 180 200 [rn4:4:151617310-151617330:+] 0.7303 136 0 -7.15 -0.7956 MIMAT0005328 rno-miR-673 25664 Pparg gagguuccuggccucGACACUc |||||| caccuaagaaauuuaCUGUGAa 2 8 75 96 [rn4:4:151617205-151617226:+] 0.7052 120 6 -14.26 -0.7986 MIMAT0005336 rno-miR-760-5p 25664 Pparg gccCGAGACCACCGGACUCCCc || || | ::|||||| auuGCACUAUUAUUUUGAGGGg 2 20 41 62 [rn4:4:151617171-151617192:+] 0.5992 135 6 -18.25 -0.2574 MIMAT0012825 rno-miR-105 25664 Pparg uggugucuguagacUCGUGAAc ||||:|| uuuacugugaaaaaAGCAUUUa 2 9 86 107 [rn4:4:151617216-151617237:+] 0.7178 124 0 -7.93 -0.1867 MIMAT0012829 rno-miR-511 25664 Pparg acucACGUCUCGUUUUCCGUa | | | | |||| ||| aauuUACUGUGAAAAAAGCAu 2 18 84 104 [rn4:4:151617214-151617234:+] 0.7178 121 0 -6.11 -0.1682 MIMAT0012832 rno-miR-568 25664 Pparg cacACAUAUGU-AAAUAUGUa || || :| |||||:|| acaUG-AUCUAUUUUAUGCAu 2 18 126 145 [rn4:4:151617256-151617275:+] 0.7303 134 0 -8.93 -0.1125 MIMAT0012832 rno-miR-568 25664 Pparg cacACAUAU-GUAAAUAUGUa || ||| ::|||||| | uuaUGCAUAUUGUUUAUAAAg 2 18 138 158 [rn4:4:151617268-151617288:+] 0.7303 128 0 -6.57 -0.2341 MIMAT0012840 rno-miR-802 25664 Pparg uuccuacuuagaaacAAUGACu |||||| ugacaccuaagaaauUUACUGu 2 8 72 93 [rn4:4:151617202-151617223:+] 0.7052 120 6 -5.38 -0.2885 MIMAT0012847 rno-miR-293 25664 Pparg guuucacaGUGUGUCAAACUCa || | ||||| || uuuaaaaaCAAAAAGUUUUAGa 2 15 104 125 [rn4:4:151617234-151617255:+] 0.7303 122 0 -7.00 -0.1592 MIMAT0012848 rno-miR-294 25664 Pparg ucUAUCCCGGAGGUAAAACUc || | |: ::||||||| cgAUUGCACUAUUAUUUUGAg 2 20 39 59 [rn4:4:151617169-151617189:+] 0.5992 151 7 -13.99 -0.8432 MIMAT0000552 rno-miR-301a 25664 Pparg cgaaacuGUUAUGAUAACGUGAc | || | |||||||| guuccuuCUAU-CGAUUGCACUa 2 17 28 49 [rn4:4:151617158-151617179:+] 0.5992 150 7 -9.35 -1.1984 MIMAT0000579 rno-miR-148b-3p 25664 Pparg uguuucAAGACA-CU-ACGUGAcu |||| | || |||||| uguuccUUCUAUCGAUUGCACUau 3 17 27 50 [rn4:4:151617157-151617180:+] 0.5992 134 0 -9.08 -0.1413 MIMAT0004650 rno-miR-340-5p 25664 Pparg uuAGUCAGAGUAACGAAAUAUu |:| | :||| |||||| uuUUAUGCAUAUU-GUUUAUAa 2 21 136 156 [rn4:4:151617266-151617286:+] 0.7303 122 6 -8.22 -0.7367 MIMAT0000600 rno-miR-129 25664 Pparg cguucgggucuggcGUUUUUc |||||| aaagcauuuaaaaaCAAAAAg 2 8 98 118 [rn4:4:151617228-151617248:+] 0.7178 120 6 -9.93 -0.6123 MIMAT0000615 rno-miR-101b 25664 Pparg aaGUCGAUAGUGU-CAUGACAu || ||| | | |||||| gaCACCUAAGAAAUUUACUGUg 2 20 73 94 [rn4:4:151617203-151617224:+] 0.7052 122 6 -10.05 -0.4888 MIMAT0000798 rno-miR-27b 25664 Pparg cgUCUUGAAUCGGUGACACUu |||| || :||||||| uaAGAAAUU---UACUGUGAa 2 20 79 96 [rn4:4:151617209-151617226:+] 0.7052 151 7 -15.58 -1.3498 MIMAT0000799 rno-miR-27a 25664 Pparg cgcCUUGAAUCGGUGACACUu ||| || :||||||| uaaGAAAUU---UACUGUGAa 2 19 79 96 [rn4:4:151617209-151617226:+] 0.7052 146 7 -13.82 -1.3498 MIMAT0000804 rno-miR-30c 25664 Pparg cgacucucACAUCCUACAAAUGu || | ||||||: cuauuuuaUGCAUAUUGUUUAUa 2 16 133 155 [rn4:4:151617263-151617285:+] 0.7303 127 0 -6.58 -0.6865 MIMAT0000805 rno-miR-30e 25664 Pparg gaAGGUCAGUUCC---U-ACAAAUGu ||:| |: | | | ||||||: gaUCUAUUUUAUGCAUAUUGUUUAUa 2 21 130 155 [rn4:4:151617260-151617285:+] 0.7303 126 0 -8.97 -0.6865 MIMAT0000806 rno-miR-30b-5p 25664 Pparg ucgacucACAUCCUACAAAUGu || | ||||||: uauuuuaUGCAUAUUGUUUAUa 2 16 134 155 [rn4:4:151617264-151617285:+] 0.7303 127 0 -6.58 -0.6865 MIMAT0000807 rno-miR-30d 25664 Pparg gaaggucagccccuACAAAUGu ||||||: uauuuuaugcauauUGUUUAUa 2 9 134 155 [rn4:4:151617264-151617285:+] 0.7303 124 0 -7.00 -0.6939 MIMAT0000808 rno-miR-30a 25664 Pparg gaAGGUCAGCUCC---U-ACAAAUGu ||:| |: | | | ||||||: gaUCUAUUUUAUGCAUAUUGUUUAUa 2 21 130 155 [rn4:4:151617260-151617285:+] 0.7303 126 0 -7.34 -0.6939 MIMAT0000823 rno-miR-101a 25664 Pparg aagucaauagugucAUGACAu |||||| acaccuaagaaauuUACUGUg 2 8 74 94 [rn4:4:151617204-151617224:+] 0.7052 120 6 -8.53 -0.4956 MIMAT0000834 rno-miR-128 25664 Pparg uuucucuggccAAGUGACACu ||:|||||| caccuaagaaaUUUACUGUGa 2 11 75 95 [rn4:4:151617205-151617225:+] 0.7052 134 6 -14.93 -0.7636 MIMAT0000836 rno-miR-130a 25664 Pparg uacGGGAAAAUUG-UAACGUGAc :|||| || | |||||||| uguUCCUUCUAUCGAUUGCACUa 2 20 27 49 [rn4:4:151617157-151617179:+] 0.5992 166 7 -15.33 -1.1951 MIMAT0000837 rno-miR-130b 25664 Pparg uacGGGAAAGUAG-UAACGUGAc :|||| :||| |||||||| uguUCCUUCUAUCGAUUGCACUa 2 20 27 49 [rn4:4:151617157-151617179:+] 0.5992 170 7 -20.51 -1.1967 MIMAT0000850 rno-miR-144 25664 Pparg ucauguaguagauAUGACAu |||||| caccuaagaaauuUACUGUg 2 8 75 94 [rn4:4:151617205-151617224:+] 0.7052 120 6 -7.14 -0.4991 MIMAT0000854 rno-miR-152 25664 Pparg gguucAAGACAGU--ACGUGAcu |||| ||: |||||| guuccUUCUAUCGAUUGCACUau 3 17 28 50 [rn4:4:151617158-151617180:+] 0.5992 135 0 -12.76 -0.1413 MIMAT0000855 rno-miR-153 25664 Pparg cuagugaaaacacuGAUACGUu :|||||| gaacaugaucuauuUUAUGCAu 2 9 124 145 [rn4:4:151617254-151617275:+] 0.7303 124 6 -9.49 -0.5937 MIMAT0000865 rno-miR-190 25664 Pparg uggaUUAUAUAGU-UUGUA-UAGu || :| |:| ||||| ||| acaaAAAGUUUUAGAACAUGAUCu 2 19 111 134 [rn4:4:151617241-151617264:+] 0.7303 121 0 -5.57 -1.3274 MIMAT0000895 rno-miR-291a-3p 25664 Pparg ccguguguuucaccUUCGUGAAa |||||:|| auuuacugugaaaaAAGCAUUUa 2 10 85 107 [rn4:4:151617215-151617237:+] 0.7178 129 0 -10.20 -0.1867 MIMAT0001534 rno-miR-448 25664 Pparg uacCCUGUA--GGAU-GUAUACGUu | |||| :||| : |||||| uuaGAACAUGAUCUAUUUUAUGCAu 2 20 121 145 [rn4:4:151617251-151617275:+] 0.7303 125 6 -12.26 -0.5864 MIMAT0003196 rno-miR-376b-3p 25664 Pparg uucaccUACAAGG-AGAUA-CUa :|||||| ||||| || gacaaaGUGUUCCUUCUAUCGAu 2 16 20 42 [rn4:4:151617150-151617172:+] 0.5992 126 0 -16.56 -0.7933 MIMAT0003201 rno-miR-382 25664 Pparg gcUUAGGUGGUGCUUGUUGAAg || :| ||: ||||:|| uaAAGAUA-CAUUUACAAUUUa 2 21 154 174 [rn4:4:151617284-151617304:+] 0.7303 130 0 -8.57 -0.2384 MIMAT0003381 rno-miR-499 25664 Pparg uuuguagUGACGUUCAGAAUu || ||||:||| uuuaaaaACAAAAAGUUUUAg 2 15 104 124 [rn4:4:151617234-151617254:+] 0.7303 130 0 -9.30 -0.1769 MIMAT0005304 rno-miR-301b 25664 Pparg cgaaacuguuAUGG-UAACGUGAc ||:| |||||||| guguuccuucUAUCGAUUGCACUa 2 14 26 49 [rn4:4:151617156-151617179:+] 0.5992 152 7 -11.81 -1.1984 MIMAT0005309 rno-miR-384-5p 25664 Pparg ugUAACGGAUCCUUAACAAAUGu ||| : |: ||||||||: cuAUUUUAUGCAUAUUGUUUAUa 2 22 133 155 [rn4:4:151617263-151617285:+] 0.7303 141 0 -10.98 -0.6977 MIMAT0005339 rno-miR-873 25664 Pparg uccucUGAGUGUU---CAAGGAcg :|| |||| |||||| cagucGCUGACAAAGUGUUCCUuc 3 17 12 35 [rn4:4:151617142-151617165:+] 0.5992 131 0 -13.81 -0.1071

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G004879 Pparg Rattus norvegicus 25664 21279417

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Pparg; Nr1c3 rno-miR-128a 56 97 UUUUCUCU-------------GGCC-----AAGUGACACU :|:|:|| || ||:||||||| UGAGGGGAAAAAAAUCUGACACCUAAGAAAUUUACUGUGAA Pparg; Nr1c3 rno-miR-128b 56 97 CUUUCUCU-------------GGCC-----AAGUGACACU :|:|:|| || ||:||||||| UGAGGGGAAAAAAAUCUGACACCUAAGAAAUUUACUGUGAA Pparg; Nr1c3 rno-miR-130a 25 50 -UAC-GGGAAAAUUG-UAACGUGAC :|| :|||| || |||||||| AGUGUUCCUUCUAUCGAUUGCACUA Pparg; Nr1c3 rno-miR-130b 25 50 -UAC-GGGAAAGUAG-UAACGUGAC :|| :|||| :||| |||||||| AGUGUUCCUUCUAUCGAUUGCACUA Pparg; Nr1c3 rno-miR-134 7 20 GGGAGACCAGUUGGUCAGUGU ||| ||||||:| ------AGUC--CCAGUCGCU Pparg; Nr1c3 rno-miR-144 121 152 GAUCAUGUAGUAGAU---------AUGACAU ||| |||| ||||| ||:||| UUAGAACAUGAUCUAUUUUAUGCAUAUUGUU Pparg; Nr1c3 rno-miR-27a 58 98 -CGCCUU-------------GAAUCG----GUGACACUU- | |||| || || :|||||||| AGGGGAAAAAAAUCUGACACCUAAGAAAUUUACUGUGAAA Pparg; Nr1c3 rno-miR-301 16 50 UACGAAACUGUU-----------AUGA-UAACGUGAC || |||||| ||: |||||||| -CGC--UGACAAAGUGUUCCUUCUAUCGAUUGCACUA Pparg; Nr1c3 rno-miR-376b 25 44 UCACCUACAAGGA-GAUA-CUA- :||||||| |||| ||| ----AGUGUUCCUUCUAUCGAUU Pparg; Nr1c3 rno-miR-128a 66 95 UUUU---CUCUGG---C--CAAGUGACACU |||| || ||| | ||:||||||| AAAATCTGACACCTAAGAAATTTACTGTGA Pparg; Nr1c3 rno-miR-128b 78 95 cuUUCUCUGGCCAAGUGACACU |||| | ||:||||||| ctAAGAAA----TTTACTGTGA Pparg; Nr1c3 rno-miR-130a 26 49 uAC-GGGAAAAUUG-UAACGUGAc || :|||| || | |||||||| gTGTTCCTTCTATCGATTGCACTa Pparg; Nr1c3 rno-miR-130b 26 49 uAC-GGGAAAGUAG-UAACGUGAc || :|||| :||| |||||||| gTGTTCCTTCTATCGATTGCACTa Pparg; Nr1c3 rno-miR-134 1 19 gggagacCAGUUGGUCAGUGu ||| ||||||:| cagaaaaGTC--CCAGTCGCt Pparg; Nr1c3 rno-miR-27b 79 96 cgUCUUGAAUCGGUGACACUU |||| || :|||||||| taAGAAATT---TACTGTGAA Pparg; Nr1c3 rno-miR-376b 21 42 ucaccuACAAGG-AGAUA-CUA |||||| ||||| ||| acaaagTGTTCCTTCTATCGAT Pparg; Nr1c3 rno-miR-130a 42 49 -------------------UACG-GGAAAAUUG-UAACGUGAC :||: |||| || | |||||||| AGUCCCAGUCGCUGACAAAGUGUUCCUUCUAUCGAUUGCACUA Pparg; Nr1c3 rno-miR-130b 42 49 -------------------UACG-GGAAAGUAG-UAACGUGAC :||: |||| :||| |||||||| AGUCCCAGUCGCUGACAAAGUGUUCCUUCUAUCGAUUGCACUA Pparg; Nr1c3 rno-miR-27a 89 96 -----CGCCUUGAAUC-----------------GGUGACACUU | |||| ::|||||||| UUUGAGGGGAAAAAAAUCUGACACCUAAGAAAUUUACUGUGAAA Pparg; Nr1c3 rno-miR-27b 89 96 CG-------------------------UCUUGAAUCGGUGACACUU |||| ::|||||||| UUUGAGGGGAAAAAAAUCUGACACCUAAGAAAU---UUACUGUGAAA Pparg; Nr1c3 rno-miR-301 42 49 UA--------CGAAACUGUUAUGA------------UAACGUGAC ||| ||||| : |||||||| AGUCCCAGUCGCU--GACAAAGUGUUCCUUCUAUCGAUUGCACUA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pparg RAID00243316 rno-miR-148b-3p miRNA MIMAT0000579 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID00783978 rno-miR-101a-3p miRNA MIMAT0000823 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID00852566 rno-miR-27b-3p miRNA MIMAT0000798 Pparg mRNA 25664 Prediction 0.2202 Pparg RAID01018137 rno-miR-144-3p miRNA MIMAT0000850 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID01098898 rno-miR-448-3p miRNA MIMAT0001534 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID01524607 rno-miR-190a-5p miRNA MIMAT0000865 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID01532461 rno-miR-152-3p miRNA MIMAT0000854 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID01607629 rno-miR-130a-3p miRNA MIMAT0000836 Pparg mRNA 25664 Prediction 0.2202 Pparg RAID01666392 rno-miR-101b-3p miRNA MIMAT0000615 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID01789360 rno-miR-128-3p miRNA MIMAT0000834 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID01796741 rno-miR-301a-3p miRNA MIMAT0000552 Pparg mRNA 25664 Prediction 0.2202 Pparg RAID01841595 rno-miR-384-5p miRNA MIMAT0005309 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID01854386 rno-miR-153-3p miRNA MIMAT0000855 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID01885139 rno-miR-30e-5p miRNA MIMAT0000805 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID01964196 rno-miR-130b-3p miRNA MIMAT0000837 Pparg mRNA 25664 Prediction 0.2202 Pparg RAID02022876 rno-miR-30d-5p miRNA MIMAT0000807 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID02102052 rno-miR-340-5p miRNA MIMAT0004650 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID02533046 rno-miR-873-5p miRNA MIMAT0005339 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID02563764 rno-miR-376b-3p miRNA MIMAT0003196 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID02715310 rno-miR-30c-5p miRNA MIMAT0000804 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID02858119 rno-miR-30b-5p miRNA MIMAT0000806 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID02966359 rno-miR-30a-5p miRNA MIMAT0000808 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID03162407 rno-miR-291a-3p miRNA MIMAT0000895 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID03254422 rno-miR-301b-3p miRNA MIMAT0005304 Pparg mRNA 25664 Prediction 0.2202 Pparg RAID03263880 rno-miR-499-5p miRNA MIMAT0003381 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID03525611 rno-miR-338-5p miRNA MIMAT0004646 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID03537750 rno-miR-27a-3p miRNA MIMAT0000799 Pparg mRNA 25664 Prediction 0.2202 Pparg RAID03751967 rno-miR-382-5p miRNA MIMAT0003201 Pparg mRNA 25664 Prediction 0.1828 Pparg RAID03783263 rno-miR-129-5p miRNA MIMAT0000600 Pparg mRNA 25664 Prediction 0.1828