DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000574 rno-miR-140* 300066 Gga1 ggcACCAAGAUGGGACACCAu ||| : :||||||||| uuuUGGAAUGGCCCUGUGGUc 2 19 444 464 [rn4:7:116859737-116859757:+] 0.5585 158 7 -22.39 -0.1023 MIMAT0000576 rno-miR-336 300066 Gga1 ucUGAU-CUAUACCUUCCCACu | || |:| | ||||||| aaAGUAGGGUCAGUAAGGGUGa 2 20 674 695 [rn4:7:116859967-116859988:+] 0.5585 150 7 -16.89 -0.4598 MIMAT0000577 rno-miR-337 300066 Gga1 uuuccgUAGUAUAUCCUCGACUu :||| | ||||||| ccugugGUCACA---GAGCUGAa 2 18 456 475 [rn4:7:116859749-116859768:+] 0.5585 141 7 -13.39 -0.3004 MIMAT0004712 rno-miR-23a* 300066 Gga1 uuuaGGGUAGGGGUCCUUGGGg |:| ||: ::||||||| aggcCUCCUCUGUGGGAACCCa 2 19 355 376 [rn4:7:116859648-116859669:+] 0.6475 158 7 -24.58 -0.2267 MIMAT0005445 rno-miR-29b-1* 300066 Gga1 uuuagauuuggugguAUACUUu |||||| gaccaugggaguauuUAUGAAa 2 8 694 715 [rn4:7:116859987-116860008:+] 0.5585 120 6 -9.42 -0.1359 MIMAT0004731 rno-miR-125b* 300066 Gga1 ucCAGGGUUCUCGGAC-UGAACa | ||:|: |::|| ||||| auGACCUAGCUGUUUGCACUUGg 2 21 396 418 [rn4:7:116859689-116859711:+] 0.5585 124 0 -18.02 -0.4992 MIMAT0005280 rno-miR-743b 300066 Gga1 agauaagucauaccACAGAAAg ||||||| ggguuguccucaccUGUCUUUu 2 9 274 295 [rn4:7:116859567-116859588:+] 0.6475 140 7 -9.28 -0.4580 MIMAT0005288 rno-miR-880 300066 Gga1 agaUGAGUCUUACU--UA-CCUCAu | | ||::||| || ||||| gucAGUAAGGGUGACCAUGGGAGUa 2 20 682 706 [rn4:7:116859975-116859999:+] 0.5585 122 0 -16.22 -0.8543 MIMAT0005328 rno-miR-673 300066 Gga1 gaggUUCCUGGCCUCGACACUc ||| | | :||||||| agggAAGAAGCAUGGCUGUGAg 2 19 224 245 [rn4:7:116859517-116859538:+] 0.6475 154 7 -19.18 -0.1218 MIMAT0012827 rno-miR-1224 300066 Gga1 gagguggagggguCAGGAGUg ||||||| cugaggugggguuGUCCUCAc 2 9 266 286 [rn4:7:116859559-116859579:+] 0.6475 140 7 -14.62 -0.1814 MIMAT0012844 rno-miR-665 300066 Gga1 uccCUGGAGUCGGAGGACCa |||:| ::|||||| aauGACUU---UUUCCUGG- 2 18 720 735 [rn4:7:116860013-116860028:+] 0.5585 129 6 -15.83 -0.1434 MIMAT0012853 rno-miR-761 300066 Gga1 acacAGUCAAAGUGGGACGACg || | |: |||||||| ccccUCCCUCUUCCCCUGCUGa 2 19 89 110 [rn4:7:116859382-116859403:+] 0.5444 154 7 -18.75 -0.2090 MIMAT0012854 rno-miR-764 300066 Gga1 uccuccuguacACUCGUGg ||||||| ggggccucccaUGAGCACc 2 9 630 648 [rn4:7:116859923-116859941:+] 0.5585 140 7 -18.47 -0.2207 MIMAT0000552 rno-miR-301a 300066 Gga1 cgaaACUGUUAUGAU-AACGUGAc |||| :||: ||||||| cccaUGACCUAGCUGUUUGCACUu 2 20 393 416 [rn4:7:116859686-116859709:+] 0.5585 154 7 -15.49 -0.3624 MIMAT0000560 rno-miR-326 300066 Gga1 ugACCUCCU--UCCC----GGGUCUCc ||||||: | || ||||||| ccUGGAGGGCCAUGGAACUCCCAGAGu 2 20 576 602 [rn4:7:116859869-116859895:+] 0.5585 149 7 -29.43 -0.5887 MIMAT0000566 rno-miR-329 300066 Gga1 uuuuucCAAUC--GACCCACACAa ||| | || ||||||| cuagcuGUUUGCACUUGGUGUGUg 2 17 401 424 [rn4:7:116859694-116859717:+] 0.5585 151 7 -16.00 -0.3975 MIMAT0004641 rno-miR-330 300066 Gga1 cggaUUCUGUGUC---CGGGUCUCu ::| ||::| ||||||| uggaGGGCCAUGGAACUCCCAGAGu 2 19 578 602 [rn4:7:116859871-116859895:+] 0.5585 141 7 -21.69 -0.5960 MIMAT0000581 rno-miR-338 300066 Gga1 aguuguuuuagugacUACGACCu ||||||| cauaacuuggaggccAUGCUGGa 2 9 318 340 [rn4:7:116859611-116859633:+] 0.6475 140 7 -15.91 -0.1392 MIMAT0000788 rno-miR-19b 300066 Gga1 agucaaaacguaccUAAACGUGu :||||||| cccaugaccuagcuGUUUGCACu 2 10 393 415 [rn4:7:116859686-116859708:+] 0.5585 141 7 -9.74 -0.3141 MIMAT0000789 rno-miR-19a 300066 Gga1 agucaaaAC-GUAUC--UAAACGUGu || | ||| :||||||| acgcccaUGACCUAGCUGUUUGCACu 2 17 390 415 [rn4:7:116859683-116859708:+] 0.6030 146 7 -11.08 -0.3859 MIMAT0000794 rno-miR-24 300066 Gga1 gacaAGGACGACUUGACUCGGu ||:| | :||||||| ucccUCUUCCCCUGCUGAGCCa 2 19 93 114 [rn4:7:116859386-116859407:+] 0.5444 150 7 -22.64 -0.2330 MIMAT0000814 rno-miR-34c 300066 Gga1 cguUAGUCGAUUGA-UGU-GACGGa || ||| | || ||| ||||| cccAUGAGC-ACCUCACAUCUGCCa 2 21 637 660 [rn4:7:116859930-116859953:+] 0.5585 125 0 -14.76 -0.2468 MIMAT0004729 rno-miR-125a-3p 300066 Gga1 ccgaggguucuuGGAGUGGACa ||||||||| aggugggguuguCCUCACCUGu 2 11 269 290 [rn4:7:116859562-116859583:+] 0.6475 150 7 -22.84 -0.3668 MIMAT0000836 rno-miR-130a 300066 Gga1 uaCGGGAA---AAUUG--UAACGUGAc |||| | ||:| ||||||| acGCCCAUGACCUAGCUGUUUGCACUu 2 21 390 416 [rn4:7:116859683-116859709:+] 0.6030 142 7 -16.39 -0.4438 MIMAT0000837 rno-miR-130b 300066 Gga1 uaCGGGAAAGUAGUAACGUGAc | ||| | | ||||||| auGACCUAGC-UGUUUGCACUu 2 21 396 416 [rn4:7:116859689-116859709:+] 0.5585 146 7 -13.94 -0.3595 MIMAT0000862 rno-miR-185 300066 Gga1 aguccuugACGGAAAGAGAGGu ||| |||||||| cauccuggUGC--UUCUCUCCu 2 15 45 64 [rn4:7:116859338-116859357:+] 0.5045 147 7 -16.22 -0.1225 MIMAT0000885 rno-miR-214 300066 Gga1 gacggacAGACACGGACGACa ||| ||||||| cccucccUCUUCCCCUGCUGa 2 15 90 110 [rn4:7:116859383-116859403:+] 0.5444 146 7 -17.47 -0.2071 MIMAT0003122 rno-miR-370 300066 Gga1 uugguccaaGGUGGGGUCGUCCg | | ||||||||| cugcugagcCAAACCCAGCAGGa 2 15 104 126 [rn4:7:116859397-116859419:+] 0.5444 154 7 -25.17 -0.1047 MIMAT0003122 rno-miR-370 300066 Gga1 uugguccaaggugggGUCGUCCg ||||||| uggagagaggaggggCAGCAGGa 2 9 10 32 [rn4:7:116859303-116859325:+] 0.5045 140 7 -15.96 -0.2554 MIMAT0005304 rno-miR-301b 300066 Gga1 cgaaACUGUUAUGGU-AACGUGAc |||| :|:: ||||||| cccaUGACCUAGCUGUUUGCACUu 2 20 393 416 [rn4:7:116859686-116859709:+] 0.5585 150 7 -12.65 -0.3624 MIMAT0005339 rno-miR-873 300066 Gga1 uccucugaguguucAAGGACg |||||| aauaaaaugacuuuUUCCUGg 2 8 715 735 [rn4:7:116860008-116860028:+] 0.5585 120 6 -11.53 -0.1421

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G058367 Gga1 Rattus norvegicus 300066

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Gga1 RAID00005112 rno-miR-130b-3p miRNA MIMAT0000837 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID00357099 rno-miR-124-3p miRNA MIMAT0000828 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID00359818 rno-miR-24-3p miRNA MIMAT0000794 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID00498815 rno-miR-19a-3p miRNA MIMAT0000789 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID00554134 rno-miR-329-3p miRNA MIMAT0000566 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID00582314 rno-miR-873-5p miRNA MIMAT0005339 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID01321342 rno-miR-301b-3p miRNA MIMAT0005304 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID01846435 rno-miR-3576 miRNA MIMAT0017862 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID01882154 rno-miR-19b-3p miRNA MIMAT0000788 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID02046983 rno-miR-185-5p miRNA MIMAT0000862 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID02258962 rno-miR-3473 miRNA MIMAT0024853 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID02597411 rno-miR-125a-3p miRNA MIMAT0004729 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID02639719 rno-miR-338-3p miRNA MIMAT0000581 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID03155123 rno-miR-326-3p miRNA MIMAT0000560 Gga1 mRNA 300066 Prediction 0.2202 Gga1 RAID03426166 rno-miR-330-5p miRNA MIMAT0004641 Gga1 mRNA 300066 Prediction 0.2202 Gga1 RAID03546283 rno-miR-214-3p miRNA MIMAT0000885 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID03553720 rno-miR-770-3p miRNA MIMAT0017317 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID03771195 rno-miR-130a-3p miRNA MIMAT0000836 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID03868045 rno-miR-34c-5p miRNA MIMAT0000814 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID03924929 rno-miR-3593-5p miRNA MIMAT0017896 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID03935915 rno-miR-301a-3p miRNA MIMAT0000552 Gga1 mRNA 300066 Prediction 0.1828 Gga1 RAID03987533 rno-miR-370-3p miRNA MIMAT0003122 Gga1 mRNA 300066 Prediction 0.1828