DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Rnf139; rCG_60186 rno-miR-127 3 28 -UCGGUUCGA-GUCUGCCUAGGCU- || ||| | | :|||||:|| AAGAGAAGAUGCUGCUGGAUCUGAC Rnf139; rCG_60186 rno-miR-128a 39 64 UUUUCU-CUGGCCAAG--UGACACU- :|:|| ||| || | ||||||| CGAGGAUGACA-GUACAGACUGUGAU Rnf139; rCG_60186 rno-miR-128b 39 64 CUUUCU-CUGGCCAAG--UGACACU- :|:|| ||| || | ||||||| CGAGGAUGACA-GUACAGACUGUGAU Rnf139; rCG_60186 rno-miR-138 107 121 CUAAGUGUUGUGGUCGA |:||:|| |||| ---GCGCAGCAGCAGCA Rnf139; rCG_60186 rno-miR-142-3p 26 56 AGGU-----AUUUCAUCCU-UUGUGAUGU- ||: |:|| |||| :||| |||| ACCGAGAAAUGAACGAGGAUGACAGUACAG Rnf139; rCG_60186 rno-miR-148b 123 148 -UGUUUCAAGACACUAC-GUGACU- :||:| ||: ||||| |||||| AGCAGAAUUUAAUGAUGACACUGAU Rnf139; rCG_60186 rno-miR-199a 84 109 CUUGUCCAUC--AGACUUGUGACCC |||:|| :| || | |||| || AAACGGGGGGAUUCAGCACACAGGC Rnf139; rCG_60186 rno-miR-207 87 115 UUCCCUCCUC--UCG---GUCCUCUUCG- |||:||| ||| |||| | ||| -CGGGGGGAUUCAGCACACAGGCGCAGCA Rnf139; rCG_60186 rno-miR-210 95 114 -AGUCGGCGACAGUGUGCGUGUC- ||||| |||| ||:||| UUCAGCA-----CACAGGCGCAGC Rnf139; rCG_60186 rno-miR-218 87 105 UGUACCAAUCUAGUUCGUGUU || :|||: |||||| ---CGGGGGGAUUCAGCACAC Rnf139; rCG_60186 rno-miR-24 11 31 GACAAGGACGACUU-GACUCGGU- | ||||||:| |||| ||: ---AUGCUGCUGGAUCUGA-CCGA Rnf139; rCG_60186 rno-miR-27a 38 64 CGC-CUUGAA-UCGG---UGACACUU || |:|: ||: ||||||| ACGAGGAUGACAGUACAGACUGUGAU Rnf139; rCG_60186 rno-miR-30a-3p 12 34 -CGACGUUUGUAGGCUGACUUUC ||||| : |||:||| ||:| UGCUGCU-GGAUCUGACCGAGAA Rnf139; rCG_60186 rno-miR-331 90 118 AAGAUCCUA---------UCCGGGUCCCCG- :|||| |||| ||| || ---GGGGAUUCAGCACACAGGCGCAGCAGCA Rnf139; rCG_60186 rno-miR-343 85 96 AGACCCGUGUGCCUCCCUCU ||||:|||| --------AACGGGGGGAU- Rnf139; rCG_60186 rno-miR-345 82 103 CGUGACCUGA--UCCCC--AGUCGU- || :|||| |||||| -----AGAAACGGGGGGAUUCAGCAC Rnf139; rCG_60186 rno-miR-346 88 128 -UCUCC----------GUCCGUGA-GUC--CGUC--UGU- :|:|| |||||:| ||| |||| :|| GGGGGGAUUCAGCACACAGGCGCAGCAGCAGCAGCAGCAG Rnf139; rCG_60186 rno-miR-347 88 113 ACCCGCUGGGUC-----UCCCUGU- ||| ||::||| ||| :|| GGGGGGAUUCAGCACACAGGCGCAG Rnf139; rCG_60186 rno-miR-349 87 110 UCUCCAAUUCUGUCGUC---CCGAC |:|| | ||||| ||| CGGGGGGAUU-CAGCACACAGGCG- Rnf139; rCG_60186 rno-miR-34a 113 147 -UUGUUG--GUCG---------AUU-CUGUGACGGU |:||:| |||| |:| ||||||| CAGCAGCAGCAGCAGAAUUUAAUGAUGACACUGA-- Rnf139; rCG_60186 rno-miR-370 84 110 -UUGGUCCA--AGGUGGGGUCGUCCG- ||| :|| |:|| | || ||||| AAACGGGGGGAUUCAGCACA-CAGGCG Rnf139; rCG_60186 rno-miR-409-3p 88 116 -CCCCAA-----GUGG--CU-CGUUGUAA |||| ||| |: |||:|| GGGGGGAUUCAGCACACAGGCGCAGCAG- Rnf139; rCG_60186 rno-miR-424 1 21 AGGUUUUGUACUUAACGACGAC- ::||:| | || |||||||| -UUAAGAGAAGA--UGCUGCUGG Rnf139; rCG_60186 rno-miR-485 91 115 -CUUAAGUA--GUG-CCG-GUCGGAGA |:||||| ||| ||| |||| GGGAUUCAGCACACAGGCGCAGCA--- Rnf139; rCG_60186 rno-miR-540 16 39 GGUCCUAG-CUGGAG----ACUGGA | ||||| |||| ||| GCUGGAUCUGACCGAGAAAUGAA-- Rnf139; rCG_60186 rno-miR-127 4 26 UCGGUUCGA-GUCUGCCUAGGCU || ||| | | | :|||||:|| AGAGAAGATGCTGCTGGATCTGA Rnf139; rCG_60186 rno-miR-128a 36 62 uUUUCUCUGGC---CAAG--UGACACU || |||: :| || | ||||||| gAACGAGGATGACAGTACAGACTGTGA Rnf139; rCG_60186 rno-miR-128b 36 62 CUUUCUCUGGC---CAAG--UGACACU ||| |||: :| || | ||||||| GAACGAGGATGACAGTACAGACTGTGA Rnf139; rCG_60186 rno-miR-138 104 120 cuaaGUGUUGUGGUCGa |:||:|| |||| caggCGCAGCAGCAGCa Rnf139; rCG_60186 rno-miR-142-3p 31 54 aggUAUUUCAUCCU-UUGUGAUGU ||:|| |||| :||| |||| gaaATGAACGAGGATGACAGTACA Rnf139; rCG_60186 rno-miR-148b 124 146 uGUUUCAAGACACUAC-GUGACU ||:| ||: ||||| |||||| gCAGAATTTAATGATGACACTGA Rnf139; rCG_60186 rno-miR-207 86 113 UUCCCUCCU--CUCG---GUCCUCUUCG | |||:||| ||| |||| | ||| ACGGGGGGATTCAGCACACAGGCGCAGC Rnf139; rCG_60186 rno-miR-210 96 112 AGUCGGCGACAGUGUGCGUGUC ||||| |||| ||:||| TCAGC-----ACACAGGCGCAG Rnf139; rCG_60186 rno-miR-218 86 104 UGUACCAAUCUAGUUCGUGUu ||: || :|||: |||||| ACGGGG--GGATTCAGCACAc Rnf139; rCG_60186 rno-miR-24 8 29 gaCAAGGACGACUU-GACUCGGu | | ||||||:| |||| || aaGATGCTGCTGGATCTGA-CCg Rnf139; rCG_60186 rno-miR-30a-3p 13 33 CGACGUUUGUAGGCUGACUUUc ||||| :: |||:||| ||:| GCTGCTGG-ATCTGACCGAGAa Rnf139; rCG_60186 rno-miR-324-3p 109 130 gGUCGUCGUGGACCCCGUCacc |||||||| | | |||| gCAGCAGCAGCAGCAGCAGaat Rnf139; rCG_60186 rno-miR-331 71 93 AAG-AUC-CUAUCCGGGUCCCCg ||| || || || |:|||| TTCAAAGAGAAAGAAACGGGGGg Rnf139; rCG_60186 rno-miR-343 77 96 agacccgUGUGCCUCCCUcu | ||||:|||| gagaaagAAACGGGGGGAtt Rnf139; rCG_60186 rno-miR-345 79 101 cgugaccUGAUCCCC--AGUCGU || :|||| |||||| gaaagaaACGGGGGGATTCAGCA Rnf139; rCG_60186 rno-miR-346 105 130 UCUCCGUC--CGUGAGUC--CGUCUgu ||: |||| ||| ||| ||||| AGGCGCAGCAGCA-GCAGCAGCAGAat Rnf139; rCG_60186 rno-miR-347 78 96 acccgCUGGGUCUCCCUgu || |:|:|||| agaaaGAAACGGGGGGAtt Rnf139; rCG_60186 rno-miR-349 89 112 uCUCC-AAUUC-UGUCGUCC-CGac |:|| || || ||| |||| || gGGGGATTCAGCACA-CAGGCGCag Rnf139; rCG_60186 rno-miR-34a 117 148 UUGUUG--GUC---GAUU----CUGUGACggu |:||:| ||| :||| ||||||| AGCAGCAGCAGAATTTAATGATGACACTGatt Rnf139; rCG_60186 rno-miR-370 100 123 uUG-GUCCAAGGUGGGGUCGUCcg || |||| | :| |||||| cACACAGGCGCAGCAGCAGCAGca Rnf139; rCG_60186 rno-miR-409-3p 90 116 CCCC-AAGUGG------CUCGUUGUaa |||| |||| | | |||:|| GGGGATTCAGCACACAGGCGCAGCAgc Rnf139; rCG_60186 rno-miR-485 92 117 CUUAAGUAGUG---CCG-GUCGgaga |:||||| ||| ||| |||| GGATTCAGCACACAGGCGCAGCagca Rnf139; rCG_60186 rno-miR-540 6 29 ggUCCUA-GCUGG---AGACUGGa | ||| | :|: ||||||| agAAGATGCTGCTGGATCTGACCg Rnf139; rCG_60186 rno-miR-27a 56 63 C-----------------GC-CUUGAA-UCGG---UGACACUU || |:|: ||: ||||||| AUCUGACCGAGAAAUGAACGAGGAUGACAGUACAGACUGUGAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf139 RAID00944084 rno-miR-370-5p miRNA MIMAT0017202 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID00956088 rno-miR-101a-3p miRNA MIMAT0000823 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID01012397 rno-miR-27a-3p miRNA MIMAT0000799 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID01014274 rno-miR-203b-3p miRNA MIMAT0017800 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID01086991 rno-miR-27b-3p miRNA MIMAT0000798 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID01103054 rno-let-7d-5p miRNA MIMAT0000562 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID01118377 rno-miR-499-3p miRNA MIMAT0017227 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID01339740 rno-miR-182 miRNA MIMAT0005300 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID01477624 rno-let-7c-1-3p miRNA MIMAT0017087 Rnf139 mRNA 315000 Prediction 0.2202 Rnf139 RAID01865050 rno-miR-202-3p miRNA MIMAT0017355 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02003398 rno-miR-191a-5p miRNA MIMAT0000866 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02049512 rno-miR-191a-3p miRNA MIMAT0017146 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02269946 rno-miR-3587 miRNA MIMAT0017883 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02359094 rno-miR-452-5p miRNA MIMAT0035748 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02401885 rno-miR-3102 miRNA MIMAT0025051 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02545924 rno-miR-880-3p miRNA MIMAT0005288 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02634417 rno-miR-96-5p miRNA MIMAT0000818 Rnf139 mRNA 315000 Prediction 0.2202 Rnf139 RAID02709522 rno-miR-488-3p miRNA MIMAT0005341 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02741862 rno-miR-1193-3p miRNA MIMAT0017859 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02781734 rno-miR-136-5p miRNA MIMAT0000842 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID02815567 rno-miR-101b-3p miRNA MIMAT0000615 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID03032001 rno-miR-218a-5p miRNA MIMAT0000888 Rnf139 mRNA 315000 Prediction 0.2202 Rnf139 RAID03037540 rno-miR-29a-5p miRNA MIMAT0004718 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID03040347 rno-miR-144-3p miRNA MIMAT0000850 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID03247121 rno-miR-875 miRNA MIMAT0012842 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID03593044 rno-miR-3571 miRNA MIMAT0017851 Rnf139 mRNA 315000 Prediction 0.1828 Rnf139 RAID03939733 rno-miR-3570 miRNA MIMAT0017850 Rnf139 mRNA 315000 Prediction 0.1828