DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004639 rno-miR-325-3p 306066 Tdrd3 aacuauccuccACG--AGUUAUUu ||| ||||||| aacuuuucuucUGCCAUCAAUAAa 2 12 215 238 [rn4:15:69739526-69739549:+] 0.6233 142 7 -7.21 -1.2063 MIMAT0000604 rno-miR-350 306066 Tdrd3 cacuuuCACAUACCC-GAAACACUu ||| | ||| :||||||| -----uGUGAAAGGGUUUUUGUGAa 2 19 1 20 [rn4:15:69733897-69733904,69739320-69739331:+] 0.6334 161 7 -19.97 -1.1563 MIMAT0003152 rno-miR-22* 306066 Tdrd3 auuucGAACGGUGACUUCUUGa :|||: | ||||||| ggguuUUUGUGAAGGAAGAACc 2 18 8 29 [rn4:15:69733904-69733904,69739320-69739340:+] 0.6334 153 7 -14.85 -1.0418 MIMAT0004717 rno-miR-29b-2* 306066 Tdrd3 gauuCGGUGGUACACUUUGGUc ||||:|| | |||||| uucuGCCAUCA-AUAAAACCAg 2 19 223 243 [rn4:15:69739534-69739554:+] 0.6233 132 6 -20.26 -0.3236 MIMAT0004720 rno-miR-30e* 306066 Tdrd3 cgacaUUUGUAGGCUGACUUUc :||| |:|||||||| aggaaGAACCACUGACUGAAAg 2 18 20 41 [rn4:15:69739331-69739352:+] 0.6233 161 7 -21.26 -0.5682 MIMAT0004722 rno-miR-30d* 306066 Tdrd3 cgucgUUUGUAGACUGACUUUc :||| |||||||||| aggaaGAACCACUGACUGAAAg 2 18 20 41 [rn4:15:69739331-69739352:+] 0.6233 165 7 -21.78 -0.5682 MIMAT0000809 rno-miR-30a* 306066 Tdrd3 cgacgUUUGUAGGCUGACUUUc :||| |:|||||||| aggaaGAACCACUGACUGAAAg 2 18 20 41 [rn4:15:69739331-69739352:+] 0.6233 161 7 -21.13 -0.5682 MIMAT0004727 rno-miR-106b* 306066 Tdrd3 cgUCGUUCAUGGGUGUCACGCc | ||| || |||||:| ccAUCAA-UAAAACCAGUGUGu 2 21 228 248 [rn4:15:69739539-69739559:+] 0.6233 130 0 -12.85 -0.1473 MIMAT0005308 rno-miR-380 306066 Tdrd3 gcguacaagauaccAGUUGGua |||||| uuuaggggaaagauUCAACCua 3 9 137 158 [rn4:15:69739448-69739469:+] 0.6233 120 0 -7.99 -0.1055 MIMAT0012846 rno-miR-201 306066 Tdrd3 uucuuguuacggaAUGACUCa ||||||| gcaaggggggaaaUACUGAGu 2 9 165 185 [rn4:15:69739476-69739496:+] 0.6233 140 7 -13.98 -0.9774 MIMAT0000566 rno-miR-329 306066 Tdrd3 uuuuuccaaucgaccCACACAa |||||| ccaucaauaaaaccaGUGUGUu 2 8 228 249 [rn4:15:69739539-69739560:+] 0.6233 120 6 -8.71 -0.1727 MIMAT0000573 rno-miR-140 306066 Tdrd3 gaugguaUCCCAUUUUGGUGAc | || |:||||||| uuuugugAAGGAAGAACCACUg 2 16 12 33 [rn4:15:69739323-69739344:+] 0.6233 155 7 -18.95 -1.0480 MIMAT0000581 rno-miR-338 306066 Tdrd3 aguuguUUUAGUGACUACGACCu :| ||| :|||||| gacuguGACUCA-ACGUGCUGGa 2 18 78 99 [rn4:15:69739389-69739410:+] 0.6233 127 6 -15.46 -0.2036 MIMAT0000790 rno-miR-21 306066 Tdrd3 agUUGU-AGUCAGACUAU-UCGau ||:| | ||||||||| ||| gaAAUACUGAGUCUGAUAGAGCaa 3 21 174 197 [rn4:15:69739485-69739508:+] 0.6233 123 0 -16.89 -0.2074 MIMAT0000791 rno-miR-22 306066 Tdrd3 ugucaagaaguuGACCGUCGaa |||||||| gacugaaagaucCUGGCAGCcc 3 11 33 54 [rn4:15:69739344-69739365:+] 0.6233 130 0 -15.64 -0.1182 MIMAT0000798 rno-miR-27b 306066 Tdrd3 cgucuUGAAUCGG--UGACACUu |||| :| ||||||| uuuccACUUCUUCAGACUGUGAc 2 17 64 86 [rn4:15:69739375-69739397:+] 0.6233 147 7 -11.20 -0.5741 MIMAT0000799 rno-miR-27a 306066 Tdrd3 cgccuUGAAUCGG--UGACACUu |||| :| ||||||| uuuccACUUCUUCAGACUGUGAc 2 17 64 86 [rn4:15:69739375-69739397:+] 0.6233 147 7 -11.20 -0.5741 MIMAT0000812 rno-miR-33 306066 Tdrd3 acgUUACGUUGAUGUUACGUg ||| : :||||||| | gcaAAUAUCUUUACAAUGGAa 2 19 194 214 [rn4:15:69739505-69739525:+] 0.6233 126 0 -11.57 -0.1480 MIMAT0000842 rno-miR-136 306066 Tdrd3 aggUAGUAGUUUUGUUUACCUca | :||| || |||||| gcaAAUAUCUUUAC-AAUGGAaa 3 21 194 215 [rn4:15:69739505-69739526:+] 0.6233 130 0 -10.53 -0.1524 MIMAT0000846 rno-miR-141 306066 Tdrd3 ggUAGAAAUGGUCUGUCACAau ||| || | |||||| ccAUCAAUA-AAACCAGUGUgu 3 21 228 248 [rn4:15:69739539-69739559:+] 0.6233 126 0 -16.40 -0.3438 MIMAT0000860 rno-miR-183 306066 Tdrd3 ucacUUAAGAUGGUCACGGUAu || |:| |: |||||| ggaaAACUUUUCUUCUGCCAUc 2 19 211 232 [rn4:15:69739522-69739543:+] 0.6233 126 6 -11.20 -0.3195 MIMAT0000872 rno-miR-199a-5p 306066 Tdrd3 cuUGUCCAUCAGACUUGUGACCc :|| || ||| ||| ||| gaGCAAAUA-UCUUUACAAUGGa 2 22 192 213 [rn4:15:69739503-69739524:+] 0.6233 123 0 -12.17 -0.1051 MIMAT0000874 rno-miR-200a 306066 Tdrd3 ugUAGCAAUGGUCUGUCACAau ||| || | |||||| ccAUCAAUA-AAACCAGUGUgu 3 21 228 248 [rn4:15:69739539-69739559:+] 0.6233 126 0 -13.80 -0.3438 MIMAT0003117 rno-miR-361 306066 Tdrd3 cauggggaccuCUAAGACUAUu || ||||||| ggggaaauacuGAGUCUGAUAg 2 12 171 192 [rn4:15:69739482-69739503:+] 0.6233 147 7 -13.53 -0.6275 MIMAT0003208 rno-miR-374 306066 Tdrd3 gugaaUCGUC-CAACAUAAUAua | ||| || |||||| auaaaACCAGUGUGUUAUUAU-- 3 18 234 254 [rn4:15:69739545-69739565:+] 0.6233 132 0 -8.49 -0.1008 MIMAT0005311 rno-miR-410 306066 Tdrd3 uguccGGUAGACACAAU-AUAa ||| ||||||| ||| uaaaaCCA-GUGUGUUAUUAU- 2 17 235 254 [rn4:15:69739546-69739565:+] 0.6233 122 0 -13.76 -1.1074

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101336 Tdrd3 Rattus norvegicus 306066

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Tdrd3 RAID00069154 rno-miR-27a-3p miRNA MIMAT0000799 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID00467039 rno-miR-140-5p miRNA MIMAT0000573 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID00472570 rno-miR-338-3p miRNA MIMAT0000581 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID00507187 rno-miR-200a-3p miRNA MIMAT0000874 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID00515909 rno-miR-329-3p miRNA MIMAT0000566 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID00850434 rno-miR-361-5p miRNA MIMAT0003117 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID01105752 rno-miR-33-5p miRNA MIMAT0000812 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID01380129 rno-miR-183-5p miRNA MIMAT0000860 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID01694208 rno-miR-136-5p miRNA MIMAT0000842 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID01907554 rno-miR-21-5p miRNA MIMAT0000790 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID02020907 rno-miR-325-3p miRNA MIMAT0004639 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID02266785 rno-miR-374-5p miRNA MIMAT0003208 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID02298727 rno-miR-27b-3p miRNA MIMAT0000798 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID02711093 rno-miR-410-3p miRNA MIMAT0005311 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID03387612 rno-miR-199a-5p miRNA MIMAT0000872 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID03783679 rno-miR-141-3p miRNA MIMAT0000846 Tdrd3 mRNA 306066 Prediction 0.1828 Tdrd3 RAID03842578 rno-miR-22-3p miRNA MIMAT0000791 Tdrd3 mRNA 306066 Prediction 0.1828