DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000607 rno-miR-7a* 408217 Usp11 uaccGUCUGACACUAAACAACa | || || |:||||||| uauuCUGAAUG-GGUUUGUUGa 2 19 474 494 [rn4:X:12890645-12890665:-] 0.5857 156 7 -14.18 -0.6999 MIMAT0000607 rno-miR-7a* 408217 Usp11 uaccGUCUGACACUAAACAACa | || || |:||||||| uauuCUGAAUG-GGUUUGUUGa 2 19 474 494 [rn4:X:12890645-12890665:-] 0.5857 156 7 -14.18 -0.6997 MIMAT0004728 rno-miR-124* 408217 Usp11 uagUUCCAGGCGACACUUGUGc ::|||:| | ||||||| gggGGGGUUCAC-AUGAACACa 2 20 290 310 [rn4:X:12890829-12890849:-] 0.6306 153 7 -17.17 -0.9022 MIMAT0004728 rno-miR-124* 408217 Usp11 uagUUCCAGGCGACACUUGUGc ::|||:| | ||||||| gggGGGGUUCAC-AUGAACACa 2 20 290 310 [rn4:X:12890829-12890849:-] 0.6306 153 7 -17.17 -0.9020 MIMAT0004738 rno-miR-199a-3p 408217 Usp11 auuGGUUACACGUC--UGA-UGACa :|:|||| | | ||| |||| cucUCGAUGUCCUGGAACUCACUGu 2 20 521 545 [rn4:X:12890594-12890618:-] 0.5338 122 0 -16.38 -0.1626 MIMAT0004738 rno-miR-199a-3p 408217 Usp11 auuGGUUACACGUC--UGA-UGACa :|:|||| | | ||| |||| cucUCGAUGUCCUGGAACUCACUGu 2 20 521 545 [rn4:X:12890594-12890618:-] 0.5338 122 0 -16.38 -0.1666 MIMAT0000900 rno-miR-298 408217 Usp11 cccuUCUUGUCGGGAGGAGACGg |||| | : ||||||| gcucAGAA-AUUAGGCCUCUGCc 2 20 564 585 [rn4:X:12890554-12890575:-] 0.5338 145 7 -21.47 -0.1927 MIMAT0000900 rno-miR-298 408217 Usp11 cccuUCUUGUCGGGAGGAGACGg |||| | : ||||||| gcucAGAA-AUUAGGCCUCUGCc 2 20 564 585 [rn4:X:12890554-12890575:-] 0.5338 145 7 -21.47 -0.1917 MIMAT0003162 rno-miR-1* 408217 Usp11 ccCAUGUAUUUCUU-CAUACACg ||| || ||| ||||||| guGUAAUUACUGAAGGUAUGUGg 2 21 444 466 [rn4:X:12890673-12890695:-] 0.6377 159 7 -13.08 -0.6779 MIMAT0003162 rno-miR-1* 408217 Usp11 ccCAUGUAUUUCUU-CAUACACg ||| || ||| ||||||| guGUAAUUACUGAAGGUAUGUGg 2 21 444 466 [rn4:X:12890673-12890695:-] 0.6377 159 7 -13.08 -0.6777 MIMAT0003191 rno-miR-493 408217 Usp11 gacCGUGUGUCAUCUGGAAGu | || :| ||||||| uguGGACCAGGCUGACCUUCa 2 19 543 563 [rn4:X:12890576-12890596:-] 0.5338 146 7 -23.69 -0.4427 MIMAT0003191 rno-miR-493 408217 Usp11 gacCGUGUGUCAUCUGGAAGu | || :| ||||||| uguGGACCAGGCUGACCUUCa 2 19 543 563 [rn4:X:12890576-12890596:-] 0.5338 146 7 -23.69 -0.4174 MIMAT0004791 rno-miR-379* 408217 Usp11 caaucACCUGGUACA-AUGUAUc || :::| || |||||| uucucUGUGUUAAGUAUACAUAa 2 18 339 361 [rn4:X:12890778-12890800:-] 0.6306 121 6 -6.10 -1.1291 MIMAT0004791 rno-miR-379* 408217 Usp11 caaucACCUGGUACA-AUGUAUc || :::| || |||||| uucucUGUGUUAAGUAUACAUAa 2 18 339 361 [rn4:X:12890778-12890800:-] 0.6306 121 6 -6.10 -1.1290 MIMAT0005280 rno-miR-743b 408217 Usp11 agauaagucauaccaCAGAAAg |||||| augcaccagccauagGUCUUUg 2 8 418 439 [rn4:X:12890700-12890721:-] 0.6341 120 6 -8.27 -0.1181 MIMAT0005280 rno-miR-743b 408217 Usp11 agauaagucauaccaCAGAAAg |||||| augcaccagccauagGUCUUUg 2 8 418 439 [rn4:X:12890700-12890721:-] 0.6341 120 6 -8.27 -0.1180 MIMAT0005281 rno-miR-871 408217 Usp11 acACUGGCCGUGGUUAGACUUAu ||:::| ::|:| ||||||| ugUGGUUGAUGCUAUUCUGAAUg 2 22 462 484 [rn4:X:12890655-12890677:-] 0.6377 165 7 -25.00 -0.8489 MIMAT0005281 rno-miR-871 408217 Usp11 acACUGGCCGUGGUUAGACUUAu ||:::| ::|:| ||||||| ugUGGUUGAUGCUAUUCUGAAUg 2 22 462 484 [rn4:X:12890655-12890677:-] 0.6377 165 7 -25.00 -0.8486 MIMAT0005334 rno-miR-743a 408217 Usp11 agaugggucaaaccgCAGAAAg |||||| augcaccagccauagGUCUUUg 2 8 418 439 [rn4:X:12890700-12890721:-] 0.6341 120 6 -13.13 -0.1169 MIMAT0005334 rno-miR-743a 408217 Usp11 agaugggucaaaccgCAGAAAg |||||| augcaccagccauagGUCUUUg 2 8 418 439 [rn4:X:12890700-12890721:-] 0.6341 120 6 -13.13 -0.1168 MIMAT0012830 rno-miR-504 408217 Usp11 cuguCUCACG-UCUGGUCCCAGa || | : ||| ||||||| uguuGAUUUUGAGA-CAGGGUCu 2 19 489 510 [rn4:X:12890629-12890650:-] 0.5338 147 7 -18.85 -0.5200 MIMAT0012830 rno-miR-504 408217 Usp11 cuguCUCACG-UCUGGUCCCAGa || | : ||| ||||||| uguuGAUUUUGAGA-CAGGGUCu 2 19 489 510 [rn4:X:12890629-12890650:-] 0.5338 147 7 -18.85 -0.5198 MIMAT0012832 rno-miR-568 408217 Usp11 cacACAUAUGUAAAUAUGUa |||:| :| |||||| cucUGUGU-UAAGUAUACAu 2 18 341 359 [rn4:X:12890780-12890798:-] 0.6306 123 6 -10.55 -0.1475 MIMAT0012832 rno-miR-568 408217 Usp11 cacACAUAUGUAAAUAUGUa |||:| :| |||||| cucUGUGU-UAAGUAUACAu 2 18 341 359 [rn4:X:12890780-12890798:-] 0.6306 123 6 -10.55 -0.1474 MIMAT0012839 rno-miR-668 408217 Usp11 ccauCAC-CCGGCUCGGC-UCACUGu ||| | ||| | | |||||| cuguGUGUGCCCGUACAGCAGUGACu 2 21 193 218 [rn4:X:12890921-12890946:-] 0.6306 123 6 -18.76 -0.2158 MIMAT0012839 rno-miR-668 408217 Usp11 ccauCAC-CCGGCUCGGC-UCACUGu ||| | ||| | | |||||| cuguGUGUGCCCGUACAGCAGUGACu 2 21 193 218 [rn4:X:12890921-12890946:-] 0.6306 123 6 -18.76 -0.2157 MIMAT0012842 rno-miR-875 408217 Usp11 guGGAC-UAUU-UUGAC-UCCAUAu :||| :||| |||| |||||| guUCUGUGUAAUUACUGAAGGUAUg 2 21 439 463 [rn4:X:12890676-12890700:-] 0.6377 130 6 -19.99 -0.7104 MIMAT0012842 rno-miR-875 408217 Usp11 guggacUAUUU-UGACUC-CAUAu ||:|| || ||| |||| guucacAUGAACACAGAGUGUAUu 2 17 296 319 [rn4:X:12890820-12890843:-] 0.6306 123 0 -11.60 -0.8491 MIMAT0012842 rno-miR-875 408217 Usp11 guGGAC-UAUU-UUGAC-UCCAUAu :||| :||| |||| |||||| guUCUGUGUAAUUACUGAAGGUAUg 2 21 439 463 [rn4:X:12890676-12890700:-] 0.6377 130 6 -19.99 -0.7102 MIMAT0012842 rno-miR-875 408217 Usp11 guggacUAUUU-UGACUC-CAUAu ||:|| || ||| |||| guucacAUGAACACAGAGUGUAUu 2 17 296 319 [rn4:X:12890820-12890843:-] 0.6306 123 0 -11.60 -0.8488 MIMAT0012848 rno-miR-294 408217 Usp11 ucUAUCCCGG-AGGUAAAACUc ||:|| :: |: ||||||| gaAUGGGUUUGUUGAUUUUGAg 2 20 480 501 [rn4:X:12890638-12890659:-] 0.5857 154 7 -16.15 -0.2953 MIMAT0012848 rno-miR-294 408217 Usp11 ucUAUCCCGG-AGGUAAAACUc ||:|| :: |: ||||||| gaAUGGGUUUGUUGAUUUUGAg 2 20 480 501 [rn4:X:12890638-12890659:-] 0.5857 154 7 -16.15 -0.2952 MIMAT0012853 rno-miR-761 408217 Usp11 acACAGUCAAAGUGGGAC-GACg || |:|| | :|||| ||| ccUGGCGGUGUGCUCCUGCCUGu 2 21 174 196 [rn4:X:12890943-12890965:-] 0.6306 124 0 -17.36 -0.1019 MIMAT0012853 rno-miR-761 408217 Usp11 acACAGUCAAAGUGGGAC-GACg || |:|| | :|||| ||| ccUGGCGGUGUGCUCCUGCCUGu 2 21 174 196 [rn4:X:12890943-12890965:-] 0.6306 124 0 -17.36 -0.1019 MIMAT0000583 rno-miR-339-5p 408217 Usp11 gcACUCGAGGACCU----C-CUGUCCCu ||:|:|: | || | ||||||| aaUGGGUUUGUUGAUUUUGAGACAGGGu 2 22 481 508 [rn4:X:12890631-12890658:-] 0.5857 147 7 -21.44 -0.8219 MIMAT0000583 rno-miR-339-5p 408217 Usp11 gcACUCGAGGACCU----C-CUGUCCCu ||:|:|: | || | ||||||| aaUGGGUUUGUUGAUUUUGAGACAGGGu 2 22 481 508 [rn4:X:12890631-12890658:-] 0.5857 147 7 -21.44 -0.8216 MIMAT0000782 rno-miR-10a-5p 408217 Usp11 guguUUAAGCCUAGAUGUCCCAu :|||: || ||||||| uguuGAUUUUGA--GACAGGGUc 2 20 489 509 [rn4:X:12890630-12890650:-] 0.5338 148 7 -14.64 -0.2705 MIMAT0000782 rno-miR-10a-5p 408217 Usp11 guguUUAAGCCUAGAUGUCCCAu :|||: || ||||||| uguuGAUUUUGA--GACAGGGUc 2 20 489 509 [rn4:X:12890630-12890650:-] 0.5338 148 7 -14.64 -0.2703 MIMAT0000834 rno-miR-128 408217 Usp11 uuucucuggccaAGUGACACu |||||||| auguccuggaacUCACUGUGg 2 10 527 547 [rn4:X:12890592-12890612:-] 0.5338 145 7 -19.51 -0.3149 MIMAT0000834 rno-miR-128 408217 Usp11 uuucucuggccaAGUGACACu |||||||| auguccuggaacUCACUGUGg 2 10 527 547 [rn4:X:12890592-12890612:-] 0.5338 145 7 -19.51 -0.3128 MIMAT0000839 rno-miR-133a 408217 Usp11 gucgaccaacuucccCUGGUUu |||||| aaguauacauaaaaaGACCAAg 2 8 350 371 [rn4:X:12890768-12890789:-] 0.6306 120 6 -9.25 -0.1018 MIMAT0000839 rno-miR-133a 408217 Usp11 gucgaccaacuucccCUGGUUu |||||| aaguauacauaaaaaGACCAAg 2 8 350 371 [rn4:X:12890768-12890789:-] 0.6306 120 6 -9.25 -0.1017 MIMAT0000844 rno-miR-138 408217 Usp11 gccgGACUAAGUGUUGUGGUCGa || ||| |: :||||||| uguaCUUAUU-AU-GCACCAGCc 2 20 408 428 [rn4:X:12890711-12890731:-] 0.6306 151 7 -15.71 -0.9606 MIMAT0000844 rno-miR-138 408217 Usp11 gccgGACUAAGUGUUGUGGUCGa || ||| |: :||||||| uguaCUUAUU-AU-GCACCAGCc 2 20 408 428 [rn4:X:12890711-12890731:-] 0.6306 151 7 -15.71 -0.9604 MIMAT0000878 rno-miR-205 408217 Usp11 gucugaggccaccuuACUUCCu |||||| guucuguguaauuacUGAAGGu 2 8 439 460 [rn4:X:12890679-12890700:-] 0.6377 120 6 -13.83 -0.1034 MIMAT0000878 rno-miR-205 408217 Usp11 gucugaggccaccuuACUUCCu |||||| guucuguguaauuacUGAAGGu 2 8 439 460 [rn4:X:12890679-12890700:-] 0.6377 120 6 -13.83 -0.1033 MIMAT0000885 rno-miR-214 408217 Usp11 gacGGACAG--ACAC--GGAC-GACa |||| | |||| |||| ||| gccCCUGGCGGUGUGCUCCUGCCUGu 2 19 171 196 [rn4:X:12890943-12890968:-] 0.6306 120 0 -21.24 -0.1019 MIMAT0000885 rno-miR-214 408217 Usp11 gacGGACAG--ACAC--GGAC-GACa |||| | |||| |||| ||| gccCCUGGCGGUGUGCUCCUGCCUGu 2 19 171 196 [rn4:X:12890943-12890968:-] 0.6306 120 0 -21.24 -0.1019 MIMAT0003119 rno-miR-224 408217 Usp11 auuuGCCUUGGUGAUCACUGAAc | | || :| |||||||| gugcCCGUACAGC-AGUGACUUc 2 20 199 220 [rn4:X:12890919-12890940:-] 0.6306 153 7 -13.59 -0.2335 MIMAT0003119 rno-miR-224 408217 Usp11 auuuGCCUUGGUGAUCACUGAAc | | || :| |||||||| gugcCCGUACAGC-AGUGACUUc 2 20 199 220 [rn4:X:12890919-12890940:-] 0.6306 153 7 -13.59 -0.2333 MIMAT0003126 rno-miR-133b 408217 Usp11 aucgaccaacuucccCUGGUUu |||||| aaguauacauaaaaaGACCAAg 2 8 350 371 [rn4:X:12890768-12890789:-] 0.6306 120 6 -9.25 -0.1018 MIMAT0003126 rno-miR-133b 408217 Usp11 aucgaccaacuucccCUGGUUu |||||| aaguauacauaaaaaGACCAAg 2 8 350 371 [rn4:X:12890768-12890789:-] 0.6306 120 6 -9.25 -0.1017 MIMAT0003194 rno-miR-376c 408217 Usp11 ugcacuuUAAAGGAG-AUACAa |||||:|| ||||| gugguuuAUUUCUUCGUAUGUa 2 15 390 411 [rn4:X:12890728-12890749:-] 0.6306 130 0 -16.41 -1.2047 MIMAT0003194 rno-miR-376c 408217 Usp11 ugcacuuUAAAGGAG-AUACAa |||||:|| ||||| gugguuuAUUUCUUCGUAUGUa 2 15 390 411 [rn4:X:12890728-12890749:-] 0.6306 130 0 -16.41 -1.2046 MIMAT0003381 rno-miR-499 408217 Usp11 uuUGUA-GUGACGUUCAGAAUu || | | || | ||||||| ugACUUCCCCUCCUAGUCUUAu 2 20 214 235 [rn4:X:12890904-12890925:-] 0.6306 154 7 -9.81 -0.7661 MIMAT0003381 rno-miR-499 408217 Usp11 uuUGUA-GUGACGUUCAGAAUu || | | || | ||||||| ugACUUCCCCUCCUAGUCUUAu 2 20 214 235 [rn4:X:12890904-12890925:-] 0.6306 154 7 -9.81 -0.7659 MIMAT0005312 rno-miR-411 408217 Usp11 gcaUGCGAUAUGCCAGAUGAu || || | : ||||||| gccACUCUUUCUUGUCUACUc 2 19 40 60 [rn4:X:12891079-12891099:-] 0.5317 154 7 -10.41 -0.8065 MIMAT0005312 rno-miR-411 408217 Usp11 gcaUGCGAUAUGCCAGAUGAu || || | : ||||||| gccACUCUUUCUUGUCUACUc 2 19 40 60 [rn4:X:12891079-12891099:-] 0.5317 154 7 -10.41 -0.8063 MIMAT0005320 rno-miR-495 408217 Usp11 uucuucACGUGGUACAAACAAa || | :: ||||||| cuauucUG-AAUGGGUUUGUUg 2 17 473 493 [rn4:X:12890646-12890666:-] 0.5857 142 7 -6.84 -0.5052 MIMAT0005320 rno-miR-495 408217 Usp11 uucuucACGUGGUACAAACAAa || | :: ||||||| cuauucUG-AAUGGGUUUGUUg 2 17 473 493 [rn4:X:12890646-12890666:-] 0.5857 142 7 -6.84 -0.5049

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055742 Usp11 Rattus norvegicus 408217

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp11 RAID00063976 rno-miR-133b-3p miRNA MIMAT0003126 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID00146489 rno-miR-3586-5p miRNA MIMAT0017880 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID00498521 rno-miR-124-5p miRNA MIMAT0004728 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID00639472 rno-miR-10a-5p miRNA MIMAT0000782 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID01147079 rno-miR-205 miRNA MIMAT0000878 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID01171885 rno-miR-339-5p miRNA MIMAT0000583 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID01177518 rno-miR-93-3p miRNA MIMAT0017109 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID01360374 rno-miR-411-5p miRNA MIMAT0005312 Usp11 mRNA 408217 Prediction 0.2202 Usp11 RAID01589542 rno-miR-495 miRNA MIMAT0005320 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID02136187 rno-miR-224-5p miRNA MIMAT0003119 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID02223177 rno-miR-138-5p miRNA MIMAT0000844 Usp11 mRNA 408217 Prediction 0.2202 Usp11 RAID02265811 rno-miR-133a-3p miRNA MIMAT0000839 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID02647379 rno-miR-376c-3p miRNA MIMAT0003194 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID02806377 rno-miR-128-3p miRNA MIMAT0000834 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID02865259 rno-miR-214-3p miRNA MIMAT0000885 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID02956362 rno-miR-3588 miRNA MIMAT0017887 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID03205351 rno-miR-764-3p miRNA MIMAT0017370 Usp11 mRNA 408217 Prediction 0.1828 Usp11 RAID03500463 rno-miR-499-5p miRNA MIMAT0003381 Usp11 mRNA 408217 Prediction 0.1828