DNA & RNA Element - microRNA |
Mirbase Acc | miRNA Name | Gene ID | Gene Symbol | miRNA Alignment | Alignment | Gene Alignment | miRNA Start | miRNA End | Gene Start | Gene End | Genome Coordinates | Conservation | Align Score | Seed Cat | Energy | mirSVR Score |
MIMAT0000601 | rno-miR-129* | 287543 | Tnfaip1 | uacGAAAAACCCCAUUCCCGAa | |||| | | ||||||| | cccCUUUCUUCUG-AAGGGCUc | 2 | 20 | 293 | 313 | [rn4:10:64634500-64634520:-] | 0.5387 | 149 | 7 | -12.81 | -0.1265 |
MIMAT0000601 | rno-miR-129* | 287543 | Tnfaip1 | uacgaaaaaccccaUUCCCGAa | ||||||| | uaaaaguuuaaaagAAGGGCUa | 2 | 9 | 573 | 594 | [rn4:10:64634219-64634240:-] | 0.5006 | 140 | 7 | -11.61 | -0.4734 |
MIMAT0004718 | rno-miR-29a* | 287543 | Tnfaip1 | gaCUUGUGGUUUUCUUUAGUCa | ||: || |:|||||||| | -uGAGACCCUUAGGAAAUCAGg | 2 | 21 | 1 | 21 | [rn4:10:64634792-64634812:-] | 0.5944 | 160 | 7 | -19.80 | -0.1239 |
MIMAT0004736 | rno-miR-193* | 287543 | Tnfaip1 | aguagaacgGGCGUUUCUGGGu | | || ||||||| | ugggcaacaCAGC-AAGACCCu | 2 | 14 | 547 | 567 | [rn4:10:64634246-64634266:-] | 0.5006 | 143 | 7 | -15.67 | -0.1762 |
MIMAT0004739 | rno-miR-204* | 287543 | Tnfaip1 | uugCAGGGAAACGGAAGG-GUCg | | :||||| :|||| ||| | aggGCUCCUUU-AUUUCCUCAGc | 2 | 20 | 307 | 328 | [rn4:10:64634485-64634506:-] | 0.5387 | 121 | 0 | -20.55 | -0.4473 |
MIMAT0000893 | rno-miR-290 | 287543 | Tnfaip1 | uuUUUCACGGGGGUAUCAAACUc | ::|| | :| || ||||||| | caGGAG-GAUCACA-AGUUUGAg | 2 | 22 | 909 | 929 | [rn4:10:64633884-64633904:-] | 0.4871 | 149 | 7 | -17.56 | -0.1221 |
MIMAT0000900 | rno-miR-298 | 287543 | Tnfaip1 | cccuucUUGUCGGGAGGAGACGg | |:|| :: ||||||| | ggacuaAGCAUGUUACCUCUGCa | 2 | 18 | 703 | 725 | [rn4:10:64634088-64634110:-] | 0.5808 | 149 | 7 | -20.04 | -0.7567 |
MIMAT0000900 | rno-miR-298 | 287543 | Tnfaip1 | cccuuCU-UGUCGGGAGGAG-ACGg | || || | :|||||| ||| | uuucuGACACUGAUCUCCUCUUGCa | 2 | 19 | 862 | 886 | [rn4:10:64633927-64633951:-] | 0.5808 | 125 | 0 | -18.37 | -0.8877 |
MIMAT0004791 | rno-miR-379* | 287543 | Tnfaip1 | caAUCA--CCUG-GUACA-AUGUAUc | |||| ||:| || | |||||| | caUAGUACGGGCACACAUAUACAUAc | 2 | 21 | 742 | 767 | [rn4:10:64634046-64634071:-] | 0.5808 | 122 | 6 | -11.93 | -0.4460 |
MIMAT0003209 | rno-miR-363* | 287543 | Tnfaip1 | uuUA-ACGUA-GCACUAGGUGGGc | || | ||| | || ||||||| | acAUAUACAUACUUGCUCCACCCu | 2 | 21 | 756 | 779 | [rn4:10:64634034-64634057:-] | 0.5808 | 158 | 7 | -16.72 | -0.5433 |
MIMAT0003378 | rno-miR-378* | 287543 | Tnfaip1 | uguguccUGGACC--UCAGUCCUc | :|:||| :||||||| | caguccuGCUUGGGAGGUCAGGAa | 2 | 16 | 118 | 141 | [rn4:10:64634672-64634695:-] | 0.5387 | 150 | 7 | -20.50 | -0.1405 |
MIMAT0003378 | rno-miR-378* | 287543 | Tnfaip1 | uguguccuggaccucAGUCCUc | |||||| | uuguaugucuaucauUCAGGAa | 2 | 8 | 813 | 834 | [rn4:10:64633979-64634000:-] | 0.5808 | 120 | 6 | -11.68 | -0.1297 |
MIMAT0005278 | rno-miR-466b | 287543 | Tnfaip1 | guaccUGU-AUGUGUGUGUGUAu | |:| |||: :||||||| | cccacAUAGUACGGGCACACAUa | 2 | 18 | 738 | 760 | [rn4:10:64634053-64634075:-] | 0.5808 | 156 | 7 | -21.30 | -0.4846 |
MIMAT0005317 | rno-miR-463 | 287543 | Tnfaip1 | gauggGUUUAAC-CGCAGAUAGu | || ||| :||||||| | uaaagCACUUUGUAUGUCUAUCa | 2 | 18 | 804 | 826 | [rn4:10:64633987-64634009:-] | 0.5808 | 148 | 7 | -15.81 | -1.2179 |
MIMAT0005329 | rno-miR-674-5p | 287543 | Tnfaip1 | augUGGUGAGGGUA--GAGUCACg | :|:| | ||| ||||||| | aggGCUAGUGGCAUAGCUCAGUGg | 2 | 20 | 588 | 611 | [rn4:10:64634202-64634225:-] | 0.5006 | 150 | 7 | -16.22 | -0.1542 |
MIMAT0005336 | rno-miR-760-5p | 287543 | Tnfaip1 | gcccgagaccACCGGACUCCCc | | |:||||||| | aagaaaugacUAGUCUGAGGGa | 2 | 13 | 674 | 695 | [rn4:10:64634118-64634139:-] | 0.4760 | 148 | 7 | -17.06 | -0.8054 |
MIMAT0005338 | rno-miR-770 | 287543 | Tnfaip1 | gcaccgggUCUGUGCACCACGa | ||:| :||||||| | gggaaaggAGGCUUGUGGUGCu | 2 | 15 | 358 | 379 | [rn4:10:64634434-64634455:-] | 0.5761 | 154 | 7 | -23.78 | -0.5262 |
MIMAT0012825 | rno-miR-105 | 287543 | Tnfaip1 | uggUGUCUGUAGA-CUCGUGAAc | || |: |:| ||||||| | aggACCCAUCUUUAAAGCACUUu | 2 | 20 | 792 | 814 | [rn4:10:64633999-64634021:-] | 0.5808 | 146 | 7 | -14.20 | -1.0672 |
MIMAT0012826 | rno-miR-220 | 287543 | Tnfaip1 | uccagagaCUGUG-ACACCACc | || :| ||||||| | ggggaaagGAGGCUUGUGGUGc | 2 | 14 | 357 | 378 | [rn4:10:64634435-64634456:-] | 0.5761 | 144 | 7 | -18.22 | -0.4123 |
MIMAT0012829 | rno-miR-511 | 287543 | Tnfaip1 | acucACGUCUCGUUUUCCGUa | || | || |||||||| | aauuUGAACAG-AAAAGGCAg | 2 | 18 | 389 | 408 | [rn4:10:64634405-64634424:-] | 0.5761 | 155 | 7 | -13.02 | -0.4697 |
MIMAT0012829 | rno-miR-511 | 287543 | Tnfaip1 | acucACGUC-UCGUUUUCC-GUa | ||||| | | ||||| || | cucuUGCAGAAUCUAAAGGACAg | 2 | 18 | 879 | 901 | [rn4:10:64633912-64633934:-] | 0.5339 | 124 | 0 | -13.02 | -0.5554 |
MIMAT0012831 | rno-miR-544 | 287543 | Tnfaip1 | cucgaacgauuuuuACGUCUUa | ||||||| | cacugaucuccucuUGCAGAAu | 2 | 9 | 869 | 890 | [rn4:10:64633923-64633944:-] | 0.5808 | 140 | 7 | -12.15 | -0.8321 |
MIMAT0012835 | rno-miR-615 | 287543 | Tnfaip1 | cuAGGC-UCGUG-GCCCCUGGGGg | ||:| || |: | ||||||| | ccUCUGCAGGAUGCUAGGACCCCa | 2 | 21 | 718 | 741 | [rn4:10:64634072-64634095:-] | 0.5808 | 150 | 7 | -22.48 | -0.9005 |
MIMAT0012847 | rno-miR-293 | 287543 | Tnfaip1 | guUUCACAGUGUGUCAAACUCa | :|| ||||| |||||||| | agGAGGAUCACA-AGUUUGAGa | 2 | 21 | 910 | 930 | [rn4:10:64633883-64633903:-] | 0.4871 | 166 | 7 | -20.42 | -0.3520 |
MIMAT0012859 | rno-miR-711 | 287543 | Tnfaip1 | gaauGUAGAGAGGG--UCCC-AGGg | | |:|||:|: |||| ||| | ugccCCUUUCUUCUGAAGGGCUCCu | 2 | 19 | 291 | 315 | [rn4:10:64634498-64634522:-] | 0.5387 | 121 | 0 | -18.56 | -0.6024 |
MIMAT0001619 | rno-miR-322 | 287543 | Tnfaip1 | agguuuuguacuuaACGACGAc | ||||||| | cauuggccaccccaUGCUGCUc | 2 | 9 | 59 | 80 | [rn4:10:64634733-64634754:-] | 0.5387 | 140 | 7 | -12.24 | -0.2067 |
MIMAT0000579 | rno-miR-148b-3p | 287543 | Tnfaip1 | ugUUUCAAGACACUAC-GUGACu | |||| |:| | || ||||| | ccAAAGCUUU-UUCUGACACUGa | 2 | 21 | 853 | 874 | [rn4:10:64633939-64633960:-] | 0.5808 | 122 | 0 | -15.94 | -0.9509 |
MIMAT0000602 | rno-miR-20a | 287543 | Tnfaip1 | gauGGACGUGAUAUUCGUGAAAu | || | :|| ||||||||| | gacCCAUCUUUA-AAGCACUUUg | 2 | 21 | 794 | 815 | [rn4:10:64633998-64634019:-] | 0.5808 | 158 | 7 | -16.70 | -1.0536 |
MIMAT0000784 | rno-miR-15b | 287543 | Tnfaip1 | acAUUUGGUACUACACGACGAu | | ::||| ||||||| | caUUGGCCACCCCAUGCUGCUc | 2 | 21 | 59 | 80 | [rn4:10:64634733-64634754:-] | 0.5387 | 144 | 7 | -14.29 | -0.2029 |
MIMAT0000785 | rno-miR-16 | 287543 | Tnfaip1 | gcgguuauaaauGCACGACGAu | | ||||||| | cauuggccacccCAUGCUGCUc | 2 | 11 | 59 | 80 | [rn4:10:64634733-64634754:-] | 0.5387 | 142 | 7 | -13.49 | -0.2106 |
MIMAT0000786 | rno-miR-17-5p | 287543 | Tnfaip1 | gaUGGACGUGACAUUCGUGAAAc | ||| : :| ||||||||| | ggACCCAUCUUUAAAGCACUUUg | 2 | 22 | 793 | 815 | [rn4:10:64633998-64634020:-] | 0.5808 | 157 | 7 | -18.11 | -1.0562 |
MIMAT0000787 | rno-miR-18a | 287543 | Tnfaip1 | gaUAGAC--GUGAUCUACGU-GGAAu | ||:|| || | | ||| |||| | aaAUUUGAACAGAAAAGGCAGCCUUu | 2 | 22 | 388 | 413 | [rn4:10:64634400-64634425:-] | 0.5761 | 120 | 0 | -14.59 | -0.5353 |
MIMAT0000801 | rno-miR-29b | 287543 | Tnfaip1 | uugugacuaaaguuUACCACGAu | :||||||| | gggaaaggaggcuuGUGGUGCUg | 2 | 10 | 358 | 380 | [rn4:10:64634433-64634455:-] | 0.5761 | 141 | 7 | -17.30 | -0.2306 |
MIMAT0000802 | rno-miR-29a | 287543 | Tnfaip1 | auuggcuaaagucUACCACGAu | :||||||| | ggaaaggaggcuuGUGGUGCUg | 2 | 10 | 359 | 380 | [rn4:10:64634433-64634454:-] | 0.5761 | 141 | 7 | -16.16 | -0.2306 |
MIMAT0000803 | rno-miR-29c | 287543 | Tnfaip1 | auuggcuaaaguuUACCACGAu | :||||||| | ggaaaggaggcuuGUGGUGCUg | 2 | 10 | 359 | 380 | [rn4:10:64634433-64634454:-] | 0.5761 | 141 | 7 | -16.93 | -0.2306 |
MIMAT0000810 | rno-miR-31 | 287543 | Tnfaip1 | guCGAUACGGUCGUAGAACGGa | || | :|| ||||||||| | agGCCACAUCAUCAUCUUGCCu | 2 | 21 | 155 | 176 | [rn4:10:64634637-64634658:-] | 0.5387 | 164 | 7 | -21.39 | -0.1746 |
MIMAT0000817 | rno-miR-93 | 287543 | Tnfaip1 | gauGGACGUGCUUGUCGUGAAAc | || | : || |||||||| | gacCCAUCUUUAA-AGCACUUUg | 2 | 21 | 794 | 815 | [rn4:10:64633998-64634019:-] | 0.5808 | 150 | 7 | -17.13 | -1.0588 |
MIMAT0000825 | rno-miR-106b | 287543 | Tnfaip1 | uagacGU-GACA-GUCGUGAAAu | || || | |||||||| | ggaccCAUCUUUAAAGCACUUUg | 2 | 17 | 793 | 815 | [rn4:10:64633998-64634020:-] | 0.5808 | 146 | 7 | -14.22 | -1.0562 |
MIMAT0000827 | rno-miR-122 | 287543 | Tnfaip1 | guuugugguaacagUGUGAGGu | ||||||| | accuccugccaagaACACUCCc | 2 | 9 | 253 | 274 | [rn4:10:64634539-64634560:-] | 0.5387 | 140 | 7 | -14.72 | -0.1210 |
MIMAT0000833 | rno-miR-127 | 287543 | Tnfaip1 | ucggUUCGAGUCUG-CCUAG-GCu | |:||| ||:| ||||| || | gaagAGGCUAAGGCAGGAUCACGa | 2 | 19 | 509 | 532 | [rn4:10:64634281-64634304:-] | 0.5125 | 129 | 0 | -24.09 | -0.3773 |
MIMAT0000834 | rno-miR-128 | 287543 | Tnfaip1 | uuucuCUGGCCAAGUGACACu | | |:| ||||||| | guccuGUCUGCCACACUGUGg | 2 | 17 | 31 | 51 | [rn4:10:64634762-64634782:-] | 0.5665 | 144 | 7 | -15.53 | -0.1144 |
MIMAT0000853 | rno-miR-150 | 287543 | Tnfaip1 | guGACCAUGUUC----CCAACCCUCu | | |||| || | ||||||| | uaCAGGUAACAGUCCUGCUUGGGAGg | 2 | 21 | 109 | 134 | [rn4:10:64634679-64634704:-] | 0.5387 | 147 | 7 | -19.87 | -0.1343 |
MIMAT0000853 | rno-miR-150 | 287543 | Tnfaip1 | guGACCAUG-UUCCCAACCCUCu | ||| | | | ||||||| | ugCUGCUCCUCUAGCUUGGGAGu | 2 | 21 | 73 | 95 | [rn4:10:64634718-64634740:-] | 0.5387 | 143 | 7 | -14.55 | -0.1264 |
MIMAT0000854 | rno-miR-152 | 287543 | Tnfaip1 | ggUUCAAGACAGUAC-GUGACu | ||| |:| || || ||||| | caAAGCUUUUUC-UGACACUGa | 2 | 20 | 854 | 874 | [rn4:10:64633939-64633959:-] | 0.5808 | 125 | 0 | -13.27 | -0.9261 |
MIMAT0000870 | rno-miR-195 | 287543 | Tnfaip1 | cgguuauaaagacACGACGAu | ||||||| | auuggccaccccaUGCUGCUc | 2 | 9 | 60 | 80 | [rn4:10:64634733-64634753:-] | 0.5387 | 140 | 7 | -13.32 | -0.2106 |
MIMAT0000891 | rno-miR-222 | 287543 | Tnfaip1 | ugggucaUCGGUCUAC-AUCGa | | |:||||| |||| | uuuuuaaAUCUAGAUGUUAGCa | 2 | 15 | 459 | 480 | [rn4:10:64634333-64634354:-] | 0.5125 | 122 | 0 | -13.55 | -0.5974 |
MIMAT0000895 | rno-miR-291a-3p | 287543 | Tnfaip1 | ccgUGUGUUUCACCUUCGUGAAa | || || | |||||||| | aggACCCAUCUUUAAAGCACUUu | 2 | 21 | 792 | 814 | [rn4:10:64633999-64634021:-] | 0.5808 | 152 | 7 | -14.57 | -1.0646 |
MIMAT0000896 | rno-miR-292-5p | 287543 | Tnfaip1 | guUUUCUCGGGGGUCAAACUCa | ::||: :| | |||||||| | caGGAGGAUCACAAGUUUGAGa | 2 | 21 | 909 | 930 | [rn4:10:64633883-64633904:-] | 0.4871 | 160 | 7 | -21.19 | -0.3548 |
MIMAT0000903 | rno-miR-320 | 287543 | Tnfaip1 | agCGGGAGAGUUGGGUCGAAAa | || | | :| ||||||| | agGCGCACGGGA-ACAGCUUUg | 2 | 21 | 331 | 351 | [rn4:10:64634462-64634482:-] | 0.5574 | 142 | 7 | -14.46 | -0.2189 |
MIMAT0001082 | rno-miR-196b | 287543 | Tnfaip1 | ggGUUGUUGUCCUUUG-AUGGAu | ||:::::|| : || ||||| | cuCAGUGGUAGAGUACUUACCUg | 2 | 21 | 604 | 626 | [rn4:10:64634187-64634209:-] | 0.5006 | 124 | 0 | -19.92 | -0.1259 |
MIMAT0001626 | rno-miR-431 | 287543 | Tnfaip1 | acguaCUGCCG-GACGUUCUGu | |:| | | ||||||| | gccugGGCAACACAGCAAGACc | 2 | 17 | 544 | 565 | [rn4:10:64634248-64634269:-] | 0.5006 | 143 | 7 | -13.03 | -0.2468 |
MIMAT0003201 | rno-miR-382 | 287543 | Tnfaip1 | gcuuaGGUGGU-GCUUGUUGAAg | ||| || ||||||||| | uccugCCAACAGGGAACAACUUa | 2 | 18 | 212 | 234 | [rn4:10:64634579-64634601:-] | 0.5387 | 160 | 7 | -18.42 | -0.4202 |
MIMAT0003211 | rno-miR-20b-5p | 287543 | Tnfaip1 | uggacGU-GAUA-CUCGUGAAAc | || || | |||||||| | ggaccCAUCUUUAAAGCACUUUg | 2 | 17 | 793 | 815 | [rn4:10:64633998-64634020:-] | 0.5808 | 146 | 7 | -17.12 | -1.0536 |
MIMAT0003383 | rno-miR-497 | 287543 | Tnfaip1 | auguUUGGUGUCACACGACGAc | ::|||| ||||||| | cauuGGCCACCCCAUGCUGCUc | 2 | 19 | 59 | 80 | [rn4:10:64634733-64634754:-] | 0.5387 | 150 | 7 | -17.30 | -0.1992 |
MIMAT0005284 | rno-miR-874 | 287543 | Tnfaip1 | agcCAGGGAGCCC---GGUCCCGUc | | ||||: || :||||||| | ugaGACCCUUAGGAAAUCAGGGCAc | 2 | 20 | 1 | 25 | [rn4:10:64634788-64634812:-] | 0.5944 | 154 | 7 | -25.24 | -0.1040 |
MIMAT0005316 | rno-miR-455 | 287543 | Tnfaip1 | gcUACAUCAGGUUUCC-GUGUAu | | | || ||||| ||||| | gcAGGGAGAGGAAAGGCCACAUc | 2 | 21 | 142 | 164 | [rn4:10:64634649-64634671:-] | 0.5387 | 124 | 0 | -13.70 | -0.3588 |
MIMAT0005320 | rno-miR-495 | 287543 | Tnfaip1 | uuCUUCACGUGGUACAAACAAa | || || |:: |||||||| | auGACCUGGAUUUUGUUUGUUu | 2 | 21 | 440 | 461 | [rn4:10:64634352-64634373:-] | 0.5443 | 160 | 7 | -12.17 | -0.9206 |
MIMAT0005339 | rno-miR-873 | 287543 | Tnfaip1 | ucCUCUGAGUGUUCAAGGACg | |: | |:| ||||||||| | uaGGUAGUUA-AAGUUCCUGg | 2 | 20 | 942 | 961 | [rn4:10:64633852-64633871:-] | 0.4871 | 157 | 7 | -18.76 | -0.4566 |