DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 500017 Asb4 agagacguccgggacACGAAAcg |||||| uuagggauuucaaaaUGCUUUac 3 9 102 124 [rn4:4:30188018-30188040:+] 0.5941 120 0 -8.34 -0.1341 MIMAT0000591 rno-miR-343 500017 Asb4 agaccCGUGUGCCUCCCUcu |||::| |||||| gaguaGCAUGCUGAGGGAaa 3 16 147 166 [rn4:4:30188063-30188082:+] 0.5394 139 0 -15.78 -0.1002 MIMAT0000598 rno-miR-347 500017 Asb4 accCGCUGGGUCUCCCUgu || |: | |||||| guaGC-AUGCUGAGGGAaa 3 17 149 166 [rn4:4:30188065-30188082:+] 0.5394 126 0 -14.72 -0.1023 MIMAT0004708 rno-miR-9* 500017 Asb4 ugaaagccaauagauCGAAAUa |||||| uagggauuucaaaauGCUUUAc 2 8 103 124 [rn4:4:30188019-30188040:+] 0.5941 120 6 -5.96 -0.1614 MIMAT0004715 rno-miR-27a* 500017 Asb4 acGAGUGUUCGUCGAUUCGGga || | ::| | |||||| ugCUGA-GGGAAAAUAAGCCgg 3 21 155 175 [rn4:4:30188071-30188091:+] 0.5394 126 0 -13.48 -0.1674 MIMAT0005336 rno-miR-760-5p 500017 Asb4 gcccGAGACCACCG---GACUCCCc || || || ||||||| aaucCUAGAGUAGCAUGCUGAGGGa 2 19 140 164 [rn4:4:30188056-30188080:+] 0.5667 141 7 -15.01 -0.9451 MIMAT0012848 rno-miR-294 500017 Asb4 ucuaucccggaggUAAAACUc ||||||| guaaaguuaaagaAUUUUGAg 2 9 175 195 [rn4:4:30188091-30188111:+] 0.5394 140 7 -9.03 -0.8215 MIMAT0012849 rno-miR-295 500017 Asb4 cuucacacgggguguAAACUCa |||||| guaaaguuaaagaauUUUGAGa 2 8 175 196 [rn4:4:30188091-30188112:+] 0.5394 120 6 -7.91 -0.1007 MIMAT0000611 rno-miR-135b 500017 Asb4 aguguauccuuacuuUUCGGUAu ||||||| ugcuuuacauucaccAAGCCAUu 2 9 117 139 [rn4:4:30188033-30188055:+] 0.5941 140 7 -11.18 -0.7834 MIMAT0000804 rno-miR-30c 500017 Asb4 cgaCUCUCACAUCCUAC-AAAUGu |:|| | | ||| ||||| uuaGGGAUUUCAAAAUGCUUUACa 2 21 102 125 [rn4:4:30188018-30188041:+] 0.5941 120 0 -9.61 -1.2521 MIMAT0000841 rno-miR-135a 500017 Asb4 aguguauccuuauuuUUCGGUAu ||||||| ugcuuuacauucaccAAGCCAUu 2 9 117 139 [rn4:4:30188033-30188055:+] 0.5941 140 7 -11.18 -0.7834 MIMAT0000844 rno-miR-138 500017 Asb4 gccggACUAAGUGU-UGUGG-UCGa || ||:||| |||| ||| caaaaUGCUUUACAUUCACCAAGCc 2 19 112 136 [rn4:4:30188028-30188052:+] 0.5941 125 0 -15.71 -1.1392 MIMAT0000876 rno-miR-203 500017 Asb4 gaucaccaGGAUUUGUAAAGUg ::||:: |||||| uaucacacUUUAGGGAUUUCAa 2 15 93 114 [rn4:4:30188009-30188030:+] 0.5941 122 6 -9.63 -0.1190 MIMAT0004742 rno-miR-296 500017 Asb4 ccUCUCGGAGGU---GGGUUGGGAg :||| | || ||||||||| uaGGAGACAACAGUUCCCAACCCUa 2 21 5 29 [rn4:4:30187921-30187945:+] 0.5941 155 7 -27.69 -0.6870

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G116643 Asb4 Rattus norvegicus 500017

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Asb4 rno-miR-1 95 130 AUGUGUGA---------------A-GAAAUGUAAGGU |||||| | |||||||||| -UCACACUUUAGGGAUUUCAAAAUGCUUUACAUUCA- Asb4 rno-miR-103 135 161 AGUAUC-GGGA---CAUGUUACGACGA ||| :||| ||| |||||| CCAUUAAUCCUAGAGUAGCAUGCUGA- Asb4 rno-miR-10a 27 56 GUGUUUAA------GCCUAGA-UGUCCCAU- :|:||| :||| || || ||||| -CUAGAUUUCUAAGUGGA-CUCACUGGGUAG Asb4 rno-miR-135a 94 140 -AGUGU---AUCCUUA----UUU---------------UUCGGUAU ||||| ||||:|| ||| ||||||| AUCACACUUUAGGGAUUUCAAAAUGCUUUACAUUCACCAAGCCAUU Asb4 rno-miR-150 77 110 GUGACCAUGUUCCCAACC-------------CUCU- ||||| ||||||| |:|| ---CGGUACUUGGGUUGGUUAUCACACUUUAGGGAU Asb4 rno-miR-17 57 86 -UGAUGGACGUGACAU-----UCGUGAAAC :| : ||||: :|:|||| CGCAGUUUGCAUGGAUAAAACGGUACUUG- Asb4 rno-miR-189 46 70 -UGACUAUAGUCGA-GUCAUCCGUG- ||||: :|| |||| |||: CACUGGG--UAGACGCAGUUUGCAUG Asb4 rno-miR-292-3p 57 86 -UGUGAGUUUUGGACC------GCCGUGAA- :|| |: :| ||| |||:|||| CGCAGUUU--GCAUGGAUAAAACGGUACUUG Asb4 rno-miR-346 37 60 -UCUCCGUCCGUGAGUCCGUCUGU- || || |||| :||:||||: AAGUGGACU-CACU-GGGUAGACGC Asb4 rno-miR-451 54 82 -UUGAGUCAU---UACCA---UUGCCAAA :|| |||| |||| |||||| AGACGCAGUUUGCAUGGAUAAAACGGUA- Asb4 rno-miR-93 60 86 GAUGGACGUGCU-----UGUCGUGAAAC : ||||:|: ||:|:|||| -AGUUUGCAUGGAUAAAACGGUACUUG- Asb4 rno-miR-1 110 130 AUGUGUGAAGAAAUGUAAGgu | || | | |||||||||| TTCAAAATGCTTTACATTCac Asb4 rno-miR-103 135 161 aGU-AUCGGGA---CAUGUUACGACga || || :||| ||| |||||| cCATTAATCCTAGAGTAGCATGCTGag Asb4 rno-miR-10a 33 54 guGUUUAAGCCUAGAUGUCCCAU | || | ||| : || ||||| ttCTAAGT-GGACTCACTGGGTA Asb4 rno-miR-135a 95 139 AGUGU---AUCCUUA----UUU---------------UUCGGUAu ||||| ||||:|| ||| ||||||| TCACACTTTAGGGATTTCAAAATGCTTTACATTCACCAAGCCATt Asb4 rno-miR-150 66 90 GUGACCAUGUUCCC---AACCCucu ||: | || || || ||||| CATGGATAAAACGGTACTTGGGttg Asb4 rno-miR-17 34 65 uGAUGGAC----GUGA--CAUU--CGUGAAAC ||| || |||| |||: ||| |||| tCTAAGTGGACTCACTGGGTAGACGCAGTTTG Asb4 rno-miR-189 38 61 UGACUAUAGUCGAGUCAUC--CGUg | ||: ||| || :|||| ||| AGTGGACTCA-CTGGGTAGACGCAg Asb4 rno-miR-292-3p 54 84 UGUGAGUU--UUGGACC------GCCGUGAA | || ||: :| ||| |||:|||| AGACGCAGTTTGCATGGATAAAACGGTACTT Asb4 rno-miR-346 38 58 UCUCCGUCCGUGAGUCCGUCUGu || || | |||| :||:|||| AGTGG-ACTCACT-GGGTAGACg Asb4 rno-miR-451 55 82 uUGAGUCA---UUACC-A--UUGCCAaa || |||| |||| | |||||| gACGCAGTTTGCATGGATAAAACGGTac Asb4 rno-miR-93 59 86 GAUGGACGUGC-----UUGUCGUGAAac | :::||||:| |||:|:|||| CAGTTTGCATGGATAAAACGGTACTTgg Asb4 rno-miR-135a 132 139 AGUGU-AUCCUUAUUU-------------------UUCGGUAU ||| ||||:|| ||||||| ACACUUUAGGGAUUUCAAAAUGCUUUACAUUCACCAAGCCAUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Asb4 RAID00167233 rno-miR-30c-5p miRNA MIMAT0000804 Asb4 mRNA 500017 Prediction 0.1828 Asb4 RAID00652947 rno-miR-296-3p miRNA MIMAT0004742 Asb4 mRNA 500017 Prediction 0.1828 Asb4 RAID01028716 rno-miR-135a-5p miRNA MIMAT0000841 Asb4 mRNA 500017 Prediction 0.1828 Asb4 RAID02261394 rno-miR-92a-1-5p miRNA MIMAT0017107 Asb4 mRNA 500017 Prediction 0.1828 Asb4 RAID02803369 rno-miR-203a-3p miRNA MIMAT0000876 Asb4 mRNA 500017 Prediction 0.1828 Asb4 RAID02868430 rno-miR-135b-5p miRNA MIMAT0000611 Asb4 mRNA 500017 Prediction 0.1828 Asb4 RAID03298803 rno-miR-760-5p miRNA MIMAT0005336 Asb4 mRNA 500017 Prediction 0.1828 Asb4 RAID03693277 rno-miR-138-5p miRNA MIMAT0000844 Asb4 mRNA 500017 Prediction 0.1828