DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 296731 Nub1 agAGACGU-CCGGGACACGAAACg | || | ||:: ||||||| guUGUGAAUGGUUGAAUGCUUUGc 2 22 43 66 [rn4:4:5821030-5821053:-] 0.4962 148 7 -17.96 -0.3735 MIMAT0004652 rno-miR-342-5p 296731 Nub1 gaguuAGUGUCUA-UCGUGGGGa |: :||:| ||||||| uccucUUCUAGGUCUGCACCCCu 2 18 200 222 [rn4:4:5820874-5820896:-] 0.4962 148 7 -24.62 -0.2799 MIMAT0000592 rno-miR-344-3p 296731 Nub1 ugcCAGUC-CGAAAC-C--GA-UCUAGu ||||| |:|||| | || ||||| aauGUCAGUGUUUUGUGCUCUCAGAUCa 2 21 473 500 [rn4:4:5820596-5820623:-] 0.5143 129 0 -24.79 -0.8160 MIMAT0000598 rno-miR-347 296731 Nub1 acccgcuggGUCUCCCUGu |:||||||| --------gCGGAGGGACa 2 11 1 11 [rn4:4:5821085-5821095:-] 0.4962 146 7 -20.34 -0.5829 MIMAT0000601 rno-miR-129* 296731 Nub1 uacgaaaaaccccaUUCCCGAa ||||||| --gcggagggacagAAGGGCUa 2 9 1 20 [rn4:4:5821076-5821095:-] 0.4962 140 7 -16.51 -0.6438 MIMAT0000614 rno-miR-151* 296731 Nub1 ggAGU-UCCUCGGAGUCAGAUc ||| |||| ||||||| agUCAGAGGA----CAGUCUAg 2 20 147 164 [rn4:4:5820932-5820949:-] 0.4962 145 7 -19.20 -0.1650 MIMAT0004718 rno-miR-29a* 296731 Nub1 gacUUGUGGUUUUC-----UUUAGUCa || |:: ||:| ||||||| cuuAAAAUUCAAGGUUGCAAAAUCAGa 2 20 513 539 [rn4:4:5820557-5820583:-] 0.5925 142 7 -9.66 -1.0659 MIMAT0000899 rno-miR-297 296731 Nub1 guacguAUGUACGUGUGUAUGUa || || | | |||||| ggauucUAAAUUC-CUCAUACAa 2 18 548 569 [rn4:4:5820527-5820548:-] 0.5925 123 6 -10.58 -0.1858 MIMAT0000900 rno-miR-298 296731 Nub1 cccuucUUGUCGGGAGGAGACGg ||| ||:||||||||| ugcugaAACUGCUCUCCUCUGCu 2 18 330 352 [rn4:4:5820744-5820766:-] 0.5143 173 7 -28.18 -0.1946 MIMAT0000900 rno-miR-298 296731 Nub1 ccCUU-CUUGUCGGGAGGAG-ACGg ||| | : || :||||| ||| uuGAAUGCUUUGCGUUCCUCUUGCu 2 22 54 78 [rn4:4:5821018-5821042:-] 0.4962 120 0 -18.07 -0.5383 MIMAT0003115 rno-miR-207 296731 Nub1 uuccCUCCUCUC-GGUCCUCUUCg ||||| || |:|||||||| gucaGAGGACAGUCUAGGAGAAGg 2 20 148 171 [rn4:4:5820925-5820948:-] 0.4962 174 7 -28.10 -0.2274 MIMAT0003382 rno-miR-664 296731 Nub1 auccgaccccucaUUUACUUau ||||||| aauuccucauacaAAAUGAAaa 3 10 556 577 [rn4:4:5820519-5820540:-] 0.5925 125 0 -4.02 -0.2794 MIMAT0012827 rno-miR-1224 296731 Nub1 gagguggaggggucAGGAGUg |||||| uauggauucuaaauUCCUCAu 2 8 545 565 [rn4:4:5820531-5820551:-] 0.5925 120 6 -13.37 -0.1435 MIMAT0012836 rno-miR-628 296731 Nub1 ggAGAGCAUUUAU-ACAG-UCGUa |||| ||:|: |||| |||| agUCUC-CAAGUGCUGUCGAGCAc 2 21 396 418 [rn4:4:5820678-5820700:-] 0.5143 125 0 -15.18 -0.1145 MIMAT0012850 rno-miR-465 296731 Nub1 guguggucguggcAAGAUUUAu |||||||| gaguuuauauggaUUCUAAAUu 2 10 538 559 [rn4:4:5820537-5820558:-] 0.5925 145 7 -8.42 -1.0271 MIMAT0000842 rno-miR-136 296731 Nub1 aggUAGUAGUUUUGUUUACCUca ||| |: | :||||||| aaaAUC-UUUUAUUAAAUGGAag 3 21 575 596 [rn4:4:5820500-5820521:-] 0.5925 134 0 -10.52 -0.3667 MIMAT0000846 rno-miR-141 296731 Nub1 ggUAGAAAUGGUCUGUCACAAu |||| | | ||||||| uaAUCUAGAAAUGUCAGUGUUu 2 21 464 485 [rn4:4:5820611-5820632:-] 0.5143 152 7 -12.95 -0.8543 MIMAT0000855 rno-miR-153 296731 Nub1 cuagugaaaaCACUGAUACGUu || |||||||| gguaccagccGUCACUAUGCAg 2 13 427 448 [rn4:4:5820648-5820669:-] 0.5143 152 7 -13.87 -0.2617 MIMAT0000874 rno-miR-200a 296731 Nub1 ugUAGCAAUGGUCUGUCACAAu ||| | | ||||||| uaAUCUAGAAAUGUCAGUGUUu 2 21 464 485 [rn4:4:5820611-5820632:-] 0.5143 144 7 -12.95 -0.8543 MIMAT0000885 rno-miR-214 296731 Nub1 gacggacaGACACG-GACGACa |||| | |||||| ucuucccaCUGUCCGCUGCUGa 2 14 314 335 [rn4:4:5820761-5820782:-] 0.5143 121 6 -18.70 -0.3670 MIMAT0001534 rno-miR-448 296731 Nub1 uaCCCU-GUAGGAUGU-AUACGUu || | || || || |||||| aaGGUACCAGCCGUCACUAUGCAg 2 21 425 448 [rn4:4:5820648-5820671:-] 0.5143 123 6 -14.73 -0.2919 MIMAT0003179 rno-miR-542-3p 296731 Nub1 aaAGUCAAU-AGUUAGACA-GUGu |||| || || |||| ||| ccUCAGCUAGUCCUCCUGUGCACu 2 21 291 314 [rn4:4:5820782-5820805:-] 0.5143 123 0 -12.13 -0.1473 MIMAT0003203 rno-miR-485 296731 Nub1 cuuaaGUAGUGCC--GGUCGG-AGa || || || |||||| || cacagCAGCAAGGUACCAGCCGUCa 2 18 416 440 [rn4:4:5820656-5820680:-] 0.5143 120 0 -16.30 -0.4827 MIMAT0003213 rno-miR-503 296731 Nub1 gacgucaUGACAAGGGCGACGAu ||||| |||||||| ucuucccACUGU--CCGCUGCUg 2 17 314 334 [rn4:4:5820762-5820782:-] 0.5143 157 7 -22.96 -0.1816 MIMAT0005339 rno-miR-873 296731 Nub1 ucCUCUGAGUG-UUCA-AGGACg |:|||| || || ||||| cuGGGACUAACUCUGUCUCCUGu 2 20 263 285 [rn4:4:5820811-5820833:-] 0.5053 122 0 -18.62 -0.2008

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G118009 Nub1 Rattus norvegicus 296731

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nub1 RAID00222059 rno-miR-542-3p miRNA MIMAT0003179 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID00241812 rno-miR-873-5p miRNA MIMAT0005339 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID00456574 rno-miR-485-5p miRNA MIMAT0003203 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID01105012 rno-miR-141-3p miRNA MIMAT0000846 Nub1 mRNA 296731 Prediction 0.2202 Nub1 RAID02370878 rno-miR-153-5p miRNA MIMAT0017135 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID02419057 rno-miR-503-5p miRNA MIMAT0003213 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID02613707 rno-miR-194-3p miRNA MIMAT0017148 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID02852838 rno-miR-448-3p miRNA MIMAT0001534 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID02951074 rno-miR-3593-3p miRNA MIMAT0017897 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID03170826 rno-miR-214-3p miRNA MIMAT0000885 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID03271464 rno-miR-136-5p miRNA MIMAT0000842 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID03345660 rno-miR-200a-3p miRNA MIMAT0000874 Nub1 mRNA 296731 Prediction 0.2202 Nub1 RAID03352602 rno-miR-383-3p miRNA MIMAT0017197 Nub1 mRNA 296731 Prediction 0.1828 Nub1 RAID03621739 rno-miR-153-3p miRNA MIMAT0000855 Nub1 mRNA 296731 Prediction 0.1828