DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000591 rno-miR-343 25734 Hck agacCCGUGUGCCUCCCUCu | |: ::|||||||| agcuGUCGAGUGGAGGGAGa 2 17 99 118 [rn4:3:143490096-143490115:+] 0.5693 152 7 -26.85 -0.3208 MIMAT0004711 rno-miR-21* 25734 Hck cugucggguagcugaCGACAAc |||||| ugauuuaagugggaaGCUGUUa 2 8 229 250 [rn4:3:143490226-143490247:+] 0.5693 120 6 -10.27 -0.1856 MIMAT0003152 rno-miR-22* 25734 Hck auuucgaACGGUGACUUCUUGa || | ||||||| -------UGGGCCGGAAGAACa 2 16 1 15 [rn4:3:143489998-143490012:+] 0.7211 143 7 -14.00 -0.4767 MIMAT0004726 rno-miR-101a* 25734 Hck cgUAGUCGUGACACUA-UUGACu ||: || ||| || ||||| ucAUUUGC-CUGGAAUGAACUGa 2 21 191 212 [rn4:3:143490188-143490209:+] 0.5693 122 0 -17.51 -1.1333 MIMAT0000884 rno-miR-181a* 25734 Hck ccaUGUUA-GUUGCCAGCU-ACCa ||| | ||:| ||||| ||| cccACAUUCCAGCUGUCGAGUGGa 2 20 89 112 [rn4:3:143490086-143490109:+] 0.5693 130 0 -17.52 -0.2847 MIMAT0005323 rno-miR-532-3p 25734 Hck acguUCGGAACCCA---CACCCUcc |||: || | |||||| cuauAGCUGUGAUUUAAGUGGGAag 3 19 220 244 [rn4:3:143490217-143490241:+] 0.5693 125 0 -14.91 -0.1117 MIMAT0005328 rno-miR-673 25734 Hck gagguuccuggccUCGACACUc |||||||| gaauucaaucuauAGCUGUGAu 2 10 211 232 [rn4:3:143490208-143490229:+] 0.5693 145 7 -15.30 -1.2119 MIMAT0005330 rno-miR-674-3p 25734 Hck aacaagacucuacccUCGACAc |||||| cugaauucaaucuauAGCUGUg 2 8 209 230 [rn4:3:143490206-143490227:+] 0.5693 120 6 -11.86 -0.1415 MIMAT0012854 rno-miR-764 25734 Hck uccUCCUGUACACUCGUGg || ||| ||||||| ggaAGAACA--UGAGCACa 2 17 7 23 [rn4:3:143490004-143490020:+] 0.7211 149 7 -15.52 -0.6404 MIMAT0000608 rno-miR-351 25734 Hck aguccGA-GUUUCCCG--AGGAGUCCCu || ||| || |:||||||| gucauCUGCAAUCUGCCAUUCUCAGGGc 2 21 146 173 [rn4:3:143490143-143490170:+] 0.5693 150 7 -19.64 -0.7150 MIMAT0000792 rno-miR-23a 25734 Hck ccuuuagggaccgUUACACUa :|||||| uauuuaaauaaaaGAUGUGAg 2 9 257 277 [rn4:3:143490254-143490274:+] 0.5693 124 6 -7.86 -0.2237 MIMAT0000793 rno-miR-23b 25734 Hck ccauuagggaccgUUACACUa :|||||| uauuuaaauaaaaGAUGUGAg 2 9 257 277 [rn4:3:143490254-143490274:+] 0.5693 124 6 -7.71 -0.2237 MIMAT0000798 rno-miR-27b 25734 Hck cgucUUGAAUCGGUGACACUu ||: || : :|||||| auucAAUCUA-UAGCUGUGAu 2 18 213 232 [rn4:3:143490210-143490229:+] 0.5693 131 6 -9.46 -0.1610 MIMAT0000799 rno-miR-27a 25734 Hck cgccUUGAAUCGGUGACACUu ||: || : :|||||| auucAAUCUA-UAGCUGUGAu 2 18 213 232 [rn4:3:143490210-143490229:+] 0.5693 131 6 -10.14 -0.1610 MIMAT0000829 rno-miR-125a-5p 25734 Hck aguguccaauuucccAGAGUCCCu |||||||| ucugcaaucugccauUCUCAGGGc 2 10 150 173 [rn4:3:143490147-143490170:+] 0.5693 145 7 -14.40 -0.7150 MIMAT0000830 rno-miR-125b-5p 25734 Hck aguguucaaucccAGAGUCCCu |||||||| ugcaaucugccauUCUCAGGGc 2 10 152 173 [rn4:3:143490149-143490170:+] 0.5693 145 7 -15.70 -0.7113 MIMAT0000850 rno-miR-144 25734 Hck ucauguAG-UAGAUAU-GACAu || ||||||| |||| cugaauUCAAUCUAUAGCUGUg 2 15 209 230 [rn4:3:143490206-143490227:+] 0.5693 125 0 -13.24 -1.1318 MIMAT0000869 rno-miR-194 25734 Hck agGUGUACCUCAACGACAAUgu :| :||| | ||||||| uuUAAGUGG-GAAGCUGUUAaa 3 21 232 252 [rn4:3:143490229-143490249:+] 0.5693 134 0 -14.76 -0.1203 MIMAT0000873 rno-miR-200c 25734 Hck gguaguaaugggccGUCAUAAu :|||||| ggaagcuguuaaaaUAGUAUUu 2 9 240 261 [rn4:3:143490237-143490258:+] 0.5693 124 6 -7.09 -0.1750 MIMAT0000875 rno-miR-200b 25734 Hck caguaGUAAUGGUCCGUCAUAAu ::||| | :|||||| gaagcUGUUA--AAAUAGUAUUu 2 19 241 261 [rn4:3:143490238-143490258:+] 0.5693 127 6 -6.40 -0.1750 MIMAT0000879 rno-miR-206 25734 Hck ggUGUGUGAAGGAAUGUAAGGu :| | || || ||||||| acGCCCCCUCCCCCACAUUCCa 2 21 78 99 [rn4:3:143490075-143490096:+] 0.5693 156 7 -19.45 -0.2774 MIMAT0001538 rno-miR-429 25734 Hck ugCCGUAAUGGUCUGUCAUAAu | ::||| | |:|||||| aaGCUGUUA--AAAUAGUAUUu 2 21 242 261 [rn4:3:143490239-143490258:+] 0.5693 137 6 -9.73 -0.1750 MIMAT0003125 rno-miR-1 25734 Hck uaUGUGUGAAGAAAUGUAAGGu :| | || | ||||||| acGCCCCCUCCCCCACAUUCCa 2 21 78 99 [rn4:3:143490075-143490096:+] 0.5693 148 7 -13.78 -0.2774

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G013872 Hck Rattus norvegicus 25734

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Hck rno-miR-1 65 101 AUGUGUGA-------------AGAAA-UGUAAGGU- :| |||| || |||||||| GGCCCACUCUCAGACGCCCCCUCCCCCACAUUCCAG Hck rno-miR-103 36 65 -AGUAUCGGGACAUGUUACGA------CGA- ||| :|||:|| ||| |||| ||| AUCAGGGCCUUG-ACA-UGCUCGACCUGCUG Hck rno-miR-122a 74 101 UGUUUGUGGUAACA---GUGUGAGGU- ||:||:|| ||||:|||| UCAGACGCCCCCUCCCCCACAUUCCAG Hck rno-miR-125a 19 44 -GUGUCCAAUUUCCCAG-AGUCCCU ||||| :||| |||||| GCACAGCCAGAAGCCCCAUCAGGGC Hck rno-miR-136 95 119 -AGGUAG-UAGUUUUGUUUACCUCA |||| :||:|: :|: |||| UUCCAGCUGUCGAGUGGAG-GGAGA Hck rno-miR-138 90 104 CUAAGUGUUGUGGUCGA- |||| |||||| ---CCACAUU-CCAGCUG Hck rno-miR-152 174 204 -GGGUUCAAG-ACAGU------ACGUGACU- :||||||| |||: ||| |||: CUCCAAGUUAGUGUUUCUCAUUUGC-CUGGA Hck rno-miR-181a* 91 113 CCAUGUUA-GUUGCCAGCU-ACCA ||| ||:| ||||| ||| --CACAUUCCAGCUGUCGAGUGGA Hck rno-miR-183 143 166 -GUCACUUAAGAUGGUC-ACGGUAU :||| |||:| |||||| CUAGUCA--UCUGCAAUCUGCCAUU Hck rno-miR-205 97 123 -GUCUGA-GGC-CACCUUACU-UCCU- ||| || :|| ||||| || |||| CCAG-CUGUCGAGUGGAGGGAGAGGAC Hck rno-miR-206 73 101 -GGUGUGUGA---AGGAA-UGUAAGGU- :|| ||:| ||| |||||||| CUCAGACGCCCCCUCCCCCACAUUCCAG Hck rno-miR-212 224 252 CCGGCACUGA------CCUCUGACAAU- ||:||||: ||| :|||||| AGCUGUGAUUUAAGUGGGAAGCUGUUAA Hck rno-miR-214 41 66 GACGGACAG--ACA--C-GGACGACA |||| || | ||||||| -GGCCUUGACAUGCUCGACCUGCUGG Hck rno-miR-22 224 248 -UGUCAAGAAGUUGACCG-UCGAA :| || ||:|| ||| |||| AGCUGUGAUUUAAGUGGGAAGCUG Hck rno-miR-22* 193 212 UUUCGAACGGUGACUU-CUUGA- :||||| ||| ||||| ---AUUUGCCUG-GAAUGAACUG Hck rno-miR-24 39 70 GACAAGG------ACGA-CU---UGACUCGGU | || |||| || :|||:||| -AGGGCCUUGACAUGCUCGACCUGCUGGGCCC Hck rno-miR-320 78 104 AAGCGGGAGAGUU------GGGUCGAAAA ||||| ||| :|||||| -ACGCCCCCUCCCCCACAUUCCAGCUG-- Hck rno-miR-324-3p 96 122 -GGUCGUC-GUGGACC-CCGUCACC- ||||| | |: ||| || || || UCCAGCUGUCGAGUGGAGGGAGAGGA Hck rno-miR-325 41 68 -UGUGAAUGACUCG---UGGAUGAUCC- :| |||: || ||||:||:|| GGC-CUUGACAUGCUCGACCUGCUGGGC Hck rno-miR-327 23 44 -UGGGAGUACGGGG-AGUUCC- :|| ||||| |||:|| AGCCAGAA-GCCCCAUCAGGGC Hck rno-miR-328 5 30 UGCCUUCCCGU-CUCUCC-CGGUC- |||||| || ||| ||||| CCGGAAGAACAUGAGCACAGCCAGA Hck rno-miR-333 6 29 -UUUUCAUUGA--UCGUGU-GGUG ::||| ||| |||||| ||| CGGAAG-AACAUGAGCACAGCCAG Hck rno-miR-338 44 68 -AGUUGUUUUAGUGA-CU--ACGACCU- |::||| :|| || ||||||: CUUGACAU----GCUCGACCUGCUGGGC Hck rno-miR-340 99 123 CCGAUAUUUCAUUGA-CUCUGCCU- |||:| :|||:: |||| ||| AGCUGUCGAGUGGAGGGAGA-GGAC Hck rno-miR-342 226 244 CUGCCCACGCUAAAGACACACUCU- ||:||||| |||:|| -----CUGUGAUUUAA--GUGGGAA Hck rno-miR-343 100 120 AGACCCGUGUGCCUCCCUCU- ||| |: :||||||||| GCUGU-CGAGUGGAGGGAGAG Hck rno-miR-34c 152 177 -CGUUAGUCGAUU-GAUGUGACGGA- |||||| || || || |||| UGCAAUCUGCCAUUCU-CAGGGCCUC Hck rno-miR-351 48 79 -GUCCGAGUUU-----CCCGA---GGAGUCCCU || ||||:| |||| :||||| ACAUGCUCGACCUGCUGGGCCCACUCUCAGA-- Hck rno-miR-370 22 43 -UUGGUCCAAGGUGGGGUCGUCCG |:|||| :||||| |||| CAGCCAGAA---GCCCCAUCAGGG Hck rno-miR-412 97 122 UGCCGA----UCACCUGGUCCACUUCA | ||| |||||| :|| ||:| CCAGCUGUCGAGUGGA--GGGAGAGGA Hck rno-miR-449 3 29 -UGGUCGA-UUGUUA-UGUGACGGU- :||:| |||| :||| |||| GGCCGGAAGAACAUGAGCACAGCCAG Hck rno-miR-483 104 123 UGUUCUGCCCUCCC-CUCCUCACU |:|| |||||| ||||| UCGAGU--GGAGGGAGAGGAC--- Hck rno-miR-503 50 66 GUCAUGACAAGGGCGACGAU |:|| ||:|||| --AUGCUCGACCUGCUGG-- Hck rno-miR-539 171 194 -UGUGUGGUUCCUAU-UAAAGAGG :| | ||||| :|||||| GGC-CUCCAAGUUAGUGUUUCUCA Hck rno-miR-540 36 70 -GGUCCU-----------AGCUGGA-GAC-UGGA :||||: ||||||| ||| :|| AUCAGGGCCUUGACAUGCUCGACCUGCUGGGCCC Hck rno-miR-96 266 285 UCGUUUUUACACGAUCACGGUUU |||:||||| ||||:||| --AAAAGAUGUG--AGUGUCAAA Hck rno-miR-103 37 57 AGUAUCGGGACAUGUUACGAcga ||| :|||:|| || ||||| TCAGGGCCTTG-AC-ATGCTcga Hck rno-miR-125a 151 173 guguccaauuucccAGAGUCCCu |||||||| ctgcaatctgccatTCTCAGGGc Hck rno-miR-125a 20 43 GUGUCCAAUUUCCCAG-AGUCCCu ||||| :||| | |||||| CACAGCCAGAAGCCCCATCAGGGc Hck rno-miR-125b 152 173 aguguucaaucccAGAGUCCCu |||||||| tgcaatctgccatTCTCAGGGc Hck rno-miR-136 89 114 aGGUAGUA--GUU--UUGUUUACCUCa ||| ||| ||: : |:|:||||| cCCA-CATTCCAGCTGTCGAGTGGAGg Hck rno-miR-138 84 102 cuAAGUGUUGU--GGUCGA | | | ||| |||||| ccTCCCCCACATTCCAGCT Hck rno-miR-152 190 212 GGGUUCA-AGACAGUACGUGACU |:|| | ||| ||| ||||| CTCATTTGCCTGGAATGAACTGA Hck rno-miR-181a* 89 112 ccaUGUUA-GUUGCCAGCU-ACCa ||| | ||:| ||||| ||| cccACATTCCAGCTGTCGAGTGGa Hck rno-miR-183 144 165 gUCACUUAAGAUGGU-CACGGUAu ||| | |||:| | |||||| tAGTCA--TCTGCAATCTGCCATt Hck rno-miR-205 91 115 GUCUGAGG-C--CACCUUACUUCCu || |:||| | || ||:||:||| CACATTCCAGCTGTCGAGTGGAGGg Hck rno-miR-206 78 99 gGUGUGUGAAGGAAUGUAAGGU |:| | || || |||||||| aCGCCCCCTCCCCCACATTCCA Hck rno-miR-214 40 65 gaCGG-ACAG-AC-A-C-GGACGACa ||| || | || | | ||||||| ggGCCTTGACATGCTCGACCTGCTGg Hck rno-miR-22 225 247 uGUCAAGAAGUUGA-CCGUCGAa | || ||:|| | || |||| gCTGTGATTTAAGTGGGAAGCTg Hck rno-miR-22* 190 210 uuucgAACGGUGACUU-CUUGA ||||| : ||| ||||| ctcatTTGCC-TGGAATGAACT Hck rno-miR-24 44 69 GACAAGGACGA-CU---UGACUCGGu || | |||| || :|||:||| CTTGACATGCTCGACCTGCTGGGCCc Hck rno-miR-320 83 105 aaGCGGGAGAGUUGGGUCGAAAa | ||| | || :|||||| | ccCTCCCCCACATTCCAGCTGTc Hck rno-miR-324-3p 97 120 GGUCGUC-GUGGACC-CCGUCACC ||||| | |: ||| || || || CCAGCTGTCGAGTGGAGGGAGAGG Hck rno-miR-328 25 46 uGCCUUCCCGUCUCUCCCGGuc | |||| | |||||| cCAGAAGCCCCATCAGGGCCtt Hck rno-miR-328 1 8 ugccuucccgucucuCCCGGUC |||||:| --------------tGGGCCGG Hck rno-miR-333 7 28 uuUUCAU-UGAUCGUGU-GGUg ||| | |: |||||| ||| ggAAGAACATGAGCACAGCCAg Hck rno-miR-338 45 66 AGUUGUUUUAG-UGACUACGACCu |::||| : || || |||||| TTGACATGCTCGACC--TGCTGGg Hck rno-miR-342 221 244 cUGCCCACGCUAAAGACACACUcu |: | ||:||||| ||| || tATAGCTGTGATTTAAGTGGGAag Hck rno-miR-343 100 118 aGACCCGUGUGCCUCCCUCU || | |: ::||||||||| gCT-GTCGAGTGGAGGGAGA Hck rno-miR-34c 138 163 cgUUAG-UCGAUUGAUGU--GACGGa | || ||: | ||:|| ||||| tgACTCTAGTCATCTGCAATCTGCCa Hck rno-miR-351 147 173 guccGA-GUUUCCCG--AGGAGUCCCu || ||| || |:||||||| tcatCTGCAATCTGCCATTCTCAGGGc Hck rno-miR-351 49 80 GUCCGAGUU-----UCCCGAG---GAGUCccu || ||||:| |||| | ||||| CATGCTCGACCTGCTGGGCCCACTCTCAGacg Hck rno-miR-370 23 42 UUGGUCCAAGGUGGGGUCGUCCg |:|||| :||||| |||| AGCCAG---AAGCCCCATCAGGg Hck rno-miR-412 101 121 ugCCGAUCACCUGGUCCACUUCa | | |||||| :|| ||:| ctGTCGAGTGGA--GGGAGAGGa Hck rno-miR-449 4 27 uGGUC-GAUUGUUAU-GUGACGGU ||:| |||| | ||| |||| gCCGGAAGAACATGAGCACAGCCA Hck rno-miR-483 96 120 uGUUCUGC-CCUC-CCCUCCUCACu | || :| ||| || :|||| | tCCAGCTGTCGAGTGGAGGGAGAGg Hck rno-miR-503 38 64 GUCAUG--AC---AAGGGC--GACGAu ||| :| || | |:|| ||||| CAGGGCCTTGACATGCTCGACCTGCTg Hck rno-miR-540 37 60 gGUCCU--AGCUG---GAGACUGGA ||||: |:||| ||| ||||| tCAGGGCCTTGACATGCTC-GACCT Hck rno-miR-96 264 284 ucgUUUUUACACGAUCACGGUUU |||:||||| ||||:|||| ataAAAGATGTG--AGTGTCAAA Hck rno-miR-1 92 99 A--------------------UGUGUGA-AGAAA-UGUAAGGU ||:| | || |||||||| ACCUGCUGGGCCCACUCUCAGACGCCCCCUCCCCCACAUUCCAG Hck rno-miR-125a 166 173 GUGUCCAAUUUCCC--------------------AGAGUCCCU |||||||| CUCUUUUUGACUCUAGUCAUCUGCAAUCUGCCAUUCUCAGGGC Hck rno-miR-125b 166 173 AG--------------------UGUUCAAUCCC-AGAGUCCCU :||| |||||||| CUCUUUUUGACUCUAGUCAUCUGCAAUCUGCCAUUCUCAGGGC Hck rno-miR-206 92 99 -----------------GGUGUGUGAAGGAA----UGUAAGGU :|| ||:| ||| |||||||| ACCUGCUGGGCCCACUCUCAGACGCCCCCUCCCCCACAUUCCAG Hck rno-miR-214 58 65 GA-----------------CGGA-CAG-ACA--C-GGACGACA |||| | || | ||||||| AGCCAGAAGCCCCAUCAGGGCCUUGACAUGCUCGACCUGCUGG Hck rno-miR-343 111 118 A------------------------GACCCGUGUGCCUCCCUCU ||| |: :||||||||| AGACGCCCCCUCCCCCACAUUCCAGCUGU-CGAGUGGAGGGAGAG Hck rno-miR-351 166 173 GUCC----------------GA-GUUUCCCG--AGGAGUCCCU || ||| || |:||||||| CUCUUUUUGACUCUAGUCAUCUGCAAUCUGCCAUUCUCAGGGC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Hck RAID00637808 rno-miR-23a-3p miRNA MIMAT0000792 Hck mRNA 25734 Prediction 0.1828 Hck RAID00750517 rno-miR-23b-3p miRNA MIMAT0000793 Hck mRNA 25734 Prediction 0.1828 Hck RAID00774342 rno-miR-27b-3p miRNA MIMAT0000798 Hck mRNA 25734 Prediction 0.1828 Hck RAID00883354 rno-miR-351-5p miRNA MIMAT0000608 Hck mRNA 25734 Prediction 0.2202 Hck RAID01084428 rno-miR-194-5p miRNA MIMAT0000869 Hck mRNA 25734 Prediction 0.1828 Hck RAID01222054 rno-miR-200c-3p miRNA MIMAT0000873 Hck mRNA 25734 Prediction 0.1828 Hck RAID01652834 rno-miR-125b-5p miRNA MIMAT0000830 Hck mRNA 25734 Prediction 0.2202 Hck RAID01708686 rno-miR-673-5p miRNA MIMAT0005328 Hck mRNA 25734 Prediction 0.1828 Hck RAID01961131 rno-miR-125a-5p miRNA MIMAT0000829 Hck mRNA 25734 Prediction 0.2202 Hck RAID02068468 rno-miR-206-3p miRNA MIMAT0000879 Hck mRNA 25734 Prediction 0.1828 Hck RAID02284355 rno-miR-200b-3p miRNA MIMAT0000875 Hck mRNA 25734 Prediction 0.1828 Hck RAID02771324 rno-miR-144-3p miRNA MIMAT0000850 Hck mRNA 25734 Prediction 0.1828 Hck RAID02807137 rno-miR-27a-3p miRNA MIMAT0000799 Hck mRNA 25734 Prediction 0.1828 Hck RAID03516768 rno-miR-429 miRNA MIMAT0001538 Hck mRNA 25734 Prediction 0.1828 Hck RAID03722942 rno-miR-1-3p miRNA MIMAT0003125 Hck mRNA 25734 Prediction 0.1828