DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 498538 Trim35 acaaCGUCGCGA--AGUACAAa ||| | :| ||||||| gggaGCAUCUUUUCUCAUGUUu 2 17 1955 1976 [rn4:15:45748008-45748029:+] 0.5264 147 7 -11.57 -0.1133 MIMAT0000557 rno-miR-325-5p 498538 Trim35 ugUGAAUGACUCGUGGA-UGAUCc ||| |:|| || :|| ||||| ccACUAAUUG-GC-UCUAACUAGg 2 22 1206 1227 [rn4:15:45747259-45747280:+] 0.5264 125 0 -22.76 -0.1119 MIMAT0000568 rno-miR-330* 498538 Trim35 agagacguCCGG--GA-CACGAAACg ||:| || ||||||| cauugauuGGUCAACUCAUGCUUUGa 2 16 699 724 [rn4:15:45746752-45746777:+] 0.4974 141 7 -16.82 -0.5804 MIMAT0004652 rno-miR-342-5p 498538 Trim35 gaGUUAGUGUCUAUCGUGGGGa ||||: ||| ||||||| ccCAAUUUCAGCCUGCACCCCu 2 21 1148 1169 [rn4:15:45747201-45747222:+] 0.5264 164 7 -24.62 -0.4218 MIMAT0000603 rno-miR-20a* 498538 Trim35 acaUUCACG-AGCAUUACGUCa ||| || |: |||||||| aggAAG-GCAUUAUAAUGCAGg 2 19 227 247 [rn4:15:45746280-45746300:+] 0.5216 155 7 -13.79 -0.3181 MIMAT0004708 rno-miR-9* 498538 Trim35 ugAAAGCCAAUAGAUCGA-AAUa || | | |:|:||||| ||| ugUUGCAG-UGUUUAGCUAUUAu 2 21 1640 1661 [rn4:15:45747693-45747714:+] 0.5264 126 0 -11.92 -0.3817 MIMAT0003153 rno-miR-24-1* 498538 Trim35 gacuauaGUCGAGUCAU-CCGUg || ||||||| |||| gcucuccCAUCUCAGUAGGGCAa 2 16 358 380 [rn4:15:45746411-45746433:+] 0.5095 131 0 -18.82 -0.1877 MIMAT0005441 rno-miR-24-2* 498538 Trim35 ugACAAAGUCGAGUCAU-CCGUg | | || ||||||| |||| gcUCUCCCAUCUCAGUAGGGCAa 2 21 358 380 [rn4:15:45746411-45746433:+] 0.5095 132 0 -19.13 -0.1877 MIMAT0004721 rno-miR-30b-3p 498538 Trim35 cuGCAUUUGUAGGU-GUAGGGUc | ||:: | |:| ||||||| gaCCUAGG-ACCUAGCAUCCCAa 2 21 1131 1152 [rn4:15:45747184-45747205:+] 0.5264 149 7 -16.90 -0.3051 MIMAT0000902 rno-miR-300-3p 498538 Trim35 cuucucucGA-ACGGGAACGUAu || ||:|||||||| uucauuucCUCUGUCCUUGCAUu 2 15 183 205 [rn4:15:45746236-45746258:+] 0.5216 157 7 -18.17 -0.1291 MIMAT0003162 rno-miR-1* 498538 Trim35 cccAUGUAU--UUCUUCAUACACg |:| |: | || ||||||| guaUGCCUGCUAUGAUGUAUGUGu 2 20 1358 1381 [rn4:15:45747411-45747434:+] 0.5264 150 7 -11.14 -0.3016 MIMAT0003174 rno-miR-540 498538 Trim35 gguCCUAGCUGGAGACUGGa | :|| | ||||||| aguGUGUC-UCAUCUGACCu 2 18 1909 1927 [rn4:15:45747962-45747980:+] 0.5264 143 7 -15.56 -0.1010 MIMAT0004791 rno-miR-379* 498538 Trim35 caaucACCU-GGUA-CAAUGUAUc || | || | ||||||| cagccUGCACCCCUCAUUACAUAa 2 18 1156 1179 [rn4:15:45747209-45747232:+] 0.5264 143 7 -7.10 -0.4772 MIMAT0003378 rno-miR-378* 498538 Trim35 uguguccugGACCUCAGUCCUc || |||||||| uggaugcugCUUCAGUCAGGAa 2 14 876 897 [rn4:15:45746929-45746950:+] 0.4974 149 7 -19.66 -0.1200 MIMAT0003378 rno-miR-378* 498538 Trim35 uguguccuggaccUCAGUCCUc |||||||| ggugcaccgucauAGUCAGGAa 2 10 1100 1121 [rn4:15:45747153-45747174:+] 0.5264 145 7 -15.26 -0.7919 MIMAT0005280 rno-miR-743b 498538 Trim35 agaUAAGUC--AUAC---CACAGAAAg | || | |||| ||||||| ccaAGUCCGCCUAUGCCUCUGUCUUUa 2 20 60 86 [rn4:15:45746113-45746139:+] 0.3461 141 7 -8.23 -0.2384 MIMAT0005288 rno-miR-880 498538 Trim35 agaUGAGUCU---UACUUACCUCAu ||||| : || :||||||| cucACUCAUGCCUAUAGAUGGAGUc 2 20 1019 1043 [rn4:15:45747072-45747096:+] 0.5264 154 7 -15.91 -0.2235 MIMAT0005290 rno-miR-883 498538 Trim35 uaugACUCUCUACA-ACG-UCAAu ||| | ||| ||| |||| gcuaUGAAAUUUGUGUGCAAGUUu 2 19 1669 1692 [rn4:15:45747722-45747745:+] 0.5264 121 0 -9.09 -0.2850 MIMAT0005322 rno-miR-532-5p 498538 Trim35 ugucAGGAUGUGAGUUCCGUAc |:|| | ||||||| uguuUUCUUGAAGGAAGGCAUu 2 19 216 237 [rn4:15:45746269-45746290:+] 0.5216 146 7 -11.69 -0.1863 MIMAT0005334 rno-miR-743a 498538 Trim35 agauGGGUCAAAC-CGCAGAAAg |:||| ||| ||||||| gcccCUCAGGUUGUCCGUCUUUc 2 19 2011 2033 [rn4:15:45748064-45748086:+] 0.5264 161 7 -21.73 -0.2615 MIMAT0005337 rno-miR-760-3p 498538 Trim35 aggggugucuGGGUCUCGGc ::||||||| acauguuucuUUCAGAGCCu 2 11 1508 1527 [rn4:15:45747561-45747580:+] 0.5264 142 7 -15.03 -0.7742 MIMAT0012825 rno-miR-105 498538 Trim35 ugguguCUGUAGACUC-GUGAAc | || |||| ||||| cuuuguGUCAGAUGAGUCACUUa 2 17 2081 2103 [rn4:15:45748134-45748156:+] 0.5264 120 0 -12.53 -1.0333 MIMAT0012836 rno-miR-628 498538 Trim35 ggAGAGCAUUUA--UACAGUCGUa | | | :|:| |||||||| guUGUAGCGAGUUCUUGUCAGCAc 2 21 1848 1871 [rn4:15:45747901-45747924:+] 0.5264 147 7 -14.81 -0.1354 MIMAT0012848 rno-miR-294 498538 Trim35 ucuaUCC-CGGAGGUAAAACUc ||| |: |:||||||| augcAGGUGUGACUAUUUUGAg 2 18 241 262 [rn4:15:45746294-45746315:+] 0.5216 152 7 -17.91 -0.2673 MIMAT0012851 rno-miR-547 498538 Trim35 gagugaauuucuUCAUGGUu ||||||| cacagaggccauAGUACCAg 2 9 589 608 [rn4:15:45746642-45746661:+] 0.4974 140 7 -14.98 -0.1587 MIMAT0000566 rno-miR-329 498538 Trim35 uuuUUCCAAUCGACC-CACACAa :||| | |||| |||||| acuGAGG-AAACUGGAGUGUGUc 2 20 1895 1916 [rn4:15:45747948-45747969:+] 0.5264 125 6 -19.26 -0.1117 MIMAT0000787 rno-miR-18a 498538 Trim35 gauAGACGUGAU-CUACG-UGGAAu ||||:: | |||| ||||| ggcUCUGUGGAAUCAUGCUACCUUc 2 21 147 171 [rn4:15:45746200-45746224:+] 0.5216 123 0 -12.94 -0.1423 MIMAT0000796 rno-miR-26a 498538 Trim35 ucggauaggaccuAAUGAACUu |||||||| uuuuagaaagauuUUACUUGAc 2 10 1477 1498 [rn4:15:45747530-45747551:+] 0.5264 145 7 -7.62 -0.2382 MIMAT0000797 rno-miR-26b 498538 Trim35 uggauaggacuuAAUGAACUu |||||||| uuuagaaagauuUUACUUGAc 2 10 1478 1498 [rn4:15:45747531-45747551:+] 0.5264 145 7 -8.28 -0.2382 MIMAT0000817 rno-miR-93 498538 Trim35 gaugGACGUGCU-UGUCGU-GAAAc ||| |||| : |||| |||| acggCUG-ACGAGGGAGCAUCUUUu 2 20 1944 1967 [rn4:15:45747997-45748020:+] 0.5264 124 0 -16.89 -0.1509 MIMAT0000846 rno-miR-141 498538 Trim35 gguaGAAAUGGUC--UGUCACAAu :|| :|: | :||||||| gacaUUUCGCUUGUUGCAGUGUUu 2 19 1629 1652 [rn4:15:45747682-45747705:+] 0.5264 145 7 -13.57 -0.2306 MIMAT0000850 rno-miR-144 498538 Trim35 ucAUGUAGUAG--AUAUGACAu |:|||:: : |||||||| cuUGCAUUGCUGGUAUACUGUu 2 19 198 219 [rn4:15:45746251-45746272:+] 0.5216 153 7 -12.44 -0.4121 MIMAT0000852 rno-miR-146a 498538 Trim35 uuGGGUACCUUA-AGUCAAGAGu |:|||| | ||||||| aaCUCAUGCUUUGAAAGUUCUCu 2 21 711 733 [rn4:15:45746764-45746786:+] 0.4974 147 7 -18.96 -0.4122 MIMAT0000858 rno-miR-181a 498538 Trim35 ugAGUGGCUGUCGCAACU-UACAa | ||| ||| | ||| |||| cuUGACCCACAAC--UGACAUGUu 2 22 1493 1514 [rn4:15:45747546-45747567:+] 0.5264 122 0 -12.66 -0.4673 MIMAT0000859 rno-miR-181b 498538 Trim35 ugggUGGCUGUCGUUACU-UACAa ||| ||| | ||| |||| cuugACCCACA--ACUGACAUGUu 2 20 1493 1514 [rn4:15:45747546-45747567:+] 0.5264 120 0 -15.17 -0.4936 MIMAT0000863 rno-miR-186 498538 Trim35 ucggguUUUCCUCUUAAGAAAc ||| |||||||| cuuuguAAACACAAAUUCUUUc 2 17 1526 1547 [rn4:15:45747579-45747600:+] 0.5264 148 7 -6.69 -0.4049 MIMAT0000874 rno-miR-200a 498538 Trim35 uguAGC-AAUGGUCUGUCACAAu ||| ||::: :||||||| auuUCGCUUGUU--GCAGUGUUu 2 20 1632 1652 [rn4:15:45747685-45747705:+] 0.5264 147 7 -13.71 -0.2306 MIMAT0000892 rno-miR-223 498538 Trim35 ccccAUAAACU--GU-UUGACUGu || |||| || ||||||| auuuUACUUGACCCACAACUGACa 2 18 1487 1510 [rn4:15:45747540-45747563:+] 0.5264 155 7 -14.55 -0.4332 MIMAT0000895 rno-miR-291a-3p 498538 Trim35 ccguguGUUUCACCUUCGU-GAAa ::| | ||:|||| ||| gacggcUGACGAGGGAGCAUCUUu 2 18 1943 1966 [rn4:15:45747996-45748019:+] 0.5264 121 0 -19.43 -0.2215 MIMAT0000903 rno-miR-320 498538 Trim35 agcgggagAGUUGGGU-CGAAAa |||||:|| ||||| uugauuggUCAACUCAUGCUUUg 2 15 701 723 [rn4:15:45746754-45746776:+] 0.4974 130 0 -17.36 -0.3457 MIMAT0003193 rno-miR-494 498538 Trim35 ucCAAAGGGCACAUACAAAGu || | :| | |||||||| gaGUCUGUCAUUUAUGUUUCu 2 20 260 280 [rn4:15:45746313-45746333:+] 0.5216 159 7 -12.17 -0.5096 MIMAT0003193 rno-miR-494 498538 Trim35 uccaaagggcacaUACAAAGu ||||||| acccacaacugacAUGUUUCu 2 9 1497 1517 [rn4:15:45747550-45747570:+] 0.5264 140 7 -10.52 -0.3131 MIMAT0003194 rno-miR-376c 498538 Trim35 ugCACUU-UAAAGGAGA-UACAa | ||: || |::||| |||| gaGGGAGCAUCUUUUCUCAUGUu 2 20 1953 1975 [rn4:15:45748006-45748028:+] 0.5264 122 0 -12.32 -0.1920 MIMAT0003196 rno-miR-376b-3p 498538 Trim35 uuCACCUACAAGGAGAUACUa ||| | | ||||||| cuGUGUUUCCACAUCUAUGAa 2 20 803 823 [rn4:15:45746856-45746876:+] 0.4974 147 7 -12.55 -0.4435 MIMAT0003196 rno-miR-376b-3p 498538 Trim35 uucacCUACAAGGA-GAUACUa |:| | ||| |||||| gaaaaGGUAUGCCUGCUAUGAu 2 17 1352 1373 [rn4:15:45747405-45747426:+] 0.5264 124 6 -15.74 -0.1334 MIMAT0003211 rno-miR-20b-5p 498538 Trim35 ugGACGUGAU-ACUCGU-GAAAc ||| || | ||||| |||| ggCUG-ACGAGGGAGCAUCUUUu 2 20 1946 1967 [rn4:15:45747999-45748020:+] 0.5264 120 0 -14.81 -0.1538 MIMAT0005299 rno-miR-181d 498538 Trim35 ugggUGGCUGUUGUUACU-UACAa ||| ||||| ||| |||| cuugACCCACAAC--UGACAUGUu 2 20 1493 1514 [rn4:15:45747546-45747567:+] 0.5264 128 0 -15.44 -0.4640 MIMAT0005310 rno-miR-384-3p 498538 Trim35 uaACACUUGUU--AAAGAUCCUUa ||| | : | |||||||||| ucUGUCAUUUAUGUUUCUAGGAAa 2 21 263 286 [rn4:15:45746316-45746339:+] 0.5216 159 7 -13.90 -0.8253 MIMAT0005320 rno-miR-495 498538 Trim35 uuCUUCACGUGGUACAAACAAa ||||| : || ||||||| auGAAGUUUUACAAGUUUGUUa 2 21 2038 2059 [rn4:15:45748091-45748112:+] 0.5264 164 7 -12.94 -0.9923 MIMAT0005320 rno-miR-495 498538 Trim35 uuCUU-CACGUGGUA-CAAACAAa ||| |||| ::| ||||||| guGAAUGUGCUGUGUAGUUUGUUa 2 21 1598 1621 [rn4:15:45747651-45747674:+] 0.5264 158 7 -12.53 -0.3952 MIMAT0005339 rno-miR-873 498538 Trim35 uccuCUGAGUGUUCAAG-GACg | :|:: |||||| ||| ucauGCUUUGAAAGUUCUCUGa 2 18 714 735 [rn4:15:45746767-45746788:+] 0.4974 121 0 -13.66 -0.6071 MIMAT0005595 rno-miR-146b 498538 Trim35 ugUCGGAUACCUUA-AGUCAAGAGu | |: ||| | ||||||| ucAACUCAUGCUUUGAAAGUUCUCu 2 23 709 733 [rn4:15:45746762-45746786:+] 0.4974 141 7 -13.63 -0.4122 MIMAT0005595 rno-miR-146b 498538 Trim35 ugucggAUACCUUAAGUC-AAGAGu ||| | :| ||| ||||| augaugUAU-GUGUCCAGUUUCUCu 2 19 1369 1392 [rn4:15:45747422-45747445:+] 0.5264 120 0 -11.48 -0.3824

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101510 Trim35 Rattus norvegicus 498538

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim35 RAID00148849 rno-miR-181b-5p miRNA MIMAT0000859 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID00208789 rno-miR-146b-5p miRNA MIMAT0005595 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID00271490 rno-miR-343 miRNA MIMAT0000591 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID00331755 rno-miR-383-3p miRNA MIMAT0017197 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID00377734 rno-miR-384-3p miRNA MIMAT0005310 Trim35 mRNA 498538 Prediction 0.2202 Trim35 RAID00542222 rno-miR-211-3p miRNA MIMAT0017157 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID00643893 rno-miR-93-5p miRNA MIMAT0000817 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID00840588 rno-miR-494-3p miRNA MIMAT0003193 Trim35 mRNA 498538 Prediction 0.2202 Trim35 RAID01178838 rno-miR-20a-3p miRNA MIMAT0000603 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01186954 rno-miR-874-5p miRNA MIMAT0017290 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01202789 rno-miR-181a-5p miRNA MIMAT0000858 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01247393 rno-miR-200a-3p miRNA MIMAT0000874 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01299725 rno-miR-320-3p miRNA MIMAT0000903 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01474293 rno-miR-18a-5p miRNA MIMAT0000787 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01518035 rno-miR-376b-3p miRNA MIMAT0003196 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01567514 rno-miR-760-3p miRNA MIMAT0005337 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01592932 rno-miR-6315 miRNA MIMAT0025050 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01895584 rno-miR-181a-2-3p miRNA MIMAT0017138 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01957111 rno-miR-200c-5p miRNA MIMAT0017150 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID01963891 rno-miR-291a-3p miRNA MIMAT0000895 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02013542 rno-miR-186-3p miRNA MIMAT0017143 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02014848 rno-miR-186-5p miRNA MIMAT0000863 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02128346 rno-miR-26b-5p miRNA MIMAT0000797 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02167025 rno-miR-20b-5p miRNA MIMAT0003211 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02167198 rno-miR-181d-5p miRNA MIMAT0005299 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02191541 rno-miR-376c-3p miRNA MIMAT0003194 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02200316 rno-miR-1949 miRNA MIMAT0017852 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02423665 rno-miR-5132-5p miRNA MIMAT0035750 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02436482 rno-miR-146a-5p miRNA MIMAT0000852 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02579138 rno-miR-141-3p miRNA MIMAT0000846 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02635965 rno-miR-329-3p miRNA MIMAT0000566 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID02795604 rno-miR-495 miRNA MIMAT0005320 Trim35 mRNA 498538 Prediction 0.2202 Trim35 RAID03027253 rno-miR-298-3p miRNA MIMAT0017166 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID03073941 rno-miR-3120 miRNA MIMAT0017900 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID03086142 rno-miR-144-3p miRNA MIMAT0000850 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID03096919 rno-miR-3573-5p miRNA MIMAT0017856 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID03150185 rno-miR-26a-5p miRNA MIMAT0000796 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID03201190 rno-miR-223-3p miRNA MIMAT0000892 Trim35 mRNA 498538 Prediction 0.2202 Trim35 RAID03290861 rno-miR-873-5p miRNA MIMAT0005339 Trim35 mRNA 498538 Prediction 0.1828 Trim35 RAID03495842 rno-miR-423-5p miRNA MIMAT0017305 Trim35 mRNA 498538 Prediction 0.1828