DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004639 rno-miR-325-3p 64226 Mlst8 aacUAUCCUCCACGAGUUAUUu | |||| ||||||| gacACAGGA-ACCAUCAAUAAa 2 20 1074 1094 [rn4:10:13725538-13725558:-] 0.5060 141 7 -11.52 -0.7145 MIMAT0000576 rno-miR-336 64226 Mlst8 ucuGAUCUAU---ACCUUC-CCACu ||: ||| |||||| |||| acuCUGCAUACCCUGGAAGAGGUGc 2 19 373 397 [rn4:10:13726235-13726259:-] 0.5608 125 0 -17.60 -0.2222 MIMAT0000576 rno-miR-336 64226 Mlst8 ucuGAUCUAUACCUUCCC-ACu :|| | |||||||| || ugcUUACCU-UGGAAGGGCUGu 2 19 395 415 [rn4:10:13726217-13726237:-] 0.5882 120 0 -17.88 -0.4463 MIMAT0000577 rno-miR-337 64226 Mlst8 uuUCCGUA-GUAUAUCCUCGACUu | || | :|| ||||||| ugAUGCCUGUAUCCCAGAGCUGAc 2 22 322 345 [rn4:10:13726287-13726293,13727431-13727447:-] 0.5254 144 7 -12.81 -0.1139 MIMAT0000594 rno-miR-345-5p 64226 Mlst8 cgUGAC-CUGAUCCCCAGUCGu | || |||| ||||||| caAGUGAGACU-CAGGUCAGCc 2 20 87 107 [rn4:10:13727662-13727682:-] 0.5173 148 7 -18.25 -0.2121 MIMAT0000601 rno-miR-129* 64226 Mlst8 uaCGAA--AAACCCCAUUCCCGAa |||| |||| ||||||| guGCUUACCUUGG---AAGGGCUg 2 21 394 414 [rn4:10:13726218-13726238:-] 0.5882 147 7 -18.87 -0.3074 MIMAT0000607 rno-miR-7a* 64226 Mlst8 uaCCGUCUGACACUAAACA-ACa | |||: || ||||| || ugGCCAGGGUGACUUUUGUCUGg 2 21 1004 1026 [rn4:10:13725606-13725628:-] 0.5060 120 0 -14.66 -0.3092 MIMAT0004717 rno-miR-29b-2* 64226 Mlst8 gaUUCGGUGGUACACUUUGGUc |:| | :||||||||||| gaAGGGCUGUAUGUGAAACCAa 2 21 406 427 [rn4:10:13726205-13726226:-] 0.5882 168 7 -21.17 -0.7553 MIMAT0004740 rno-miR-218* 64226 Mlst8 gcGCCACGAACUGU---CUUGGUAc | | ||| |||| ||||||| ucCUGAGCUAGACACAGGAACCAUc 2 21 1064 1088 [rn4:10:13725544-13725568:-] 0.5060 159 7 -16.19 -0.2411 MIMAT0004740 rno-miR-218* 64226 Mlst8 gcgccacgaACUGUCUUGGUAc || ||||||| caauaaaugUGUAUGAACCAUc 2 14 1088 1109 [rn4:10:13725523-13725544:-] 0.5060 141 7 -10.05 -0.6245 MIMAT0000894 rno-miR-291a-5p 64226 Mlst8 ucucucccggagguGAAACUAc ||||||| aaaccucaggaugcCUUUGAUg 2 9 782 803 [rn4:10:13725829-13725850:-] 0.5294 140 7 -16.40 -0.1123 MIMAT0000900 rno-miR-298 64226 Mlst8 cccUUCU-UGU-CGGGAGGAGACGg :||| || |:| ||||||| aguGAGACUCAGGUCAGCCUCUGCa 2 21 89 113 [rn4:10:13727656-13727680:-] 0.5173 150 7 -23.46 -0.2288 MIMAT0003162 rno-miR-1* 64226 Mlst8 cccAUGUA--UUUCUU--CAUACACg ||| | :|||:: ||||||| gcuUACCUUGGAAGGGCUGUAUGUGa 2 20 396 421 [rn4:10:13726211-13726236:-] 0.5882 149 7 -13.54 -0.2298 MIMAT0005319 rno-miR-484 64226 Mlst8 uagcccuCCCCUGACU-CGGACu || |::||| ||||| ggacaucGGAGGUUGAUGCCUGu 2 16 309 331 [rn4:10:13727438-13727460:-] 0.5173 123 0 -24.13 -0.1529 MIMAT0005329 rno-miR-674-5p 64226 Mlst8 auguggugaggguAGAGUCACg |||||||| uuggaccugaggcUCUCAGUGa 2 10 680 701 [rn4:10:13725931-13725952:-] 0.5294 145 7 -17.87 -0.2580 MIMAT0005337 rno-miR-760-3p 64226 Mlst8 agggguGUCUGGGUCUCGGc | | |:||||||| gauagcCUGCCUCAGAGCCa 2 15 859 878 [rn4:10:13725754-13725773:-] 0.5294 150 7 -20.36 -0.2651 MIMAT0012823 rno-miR-490 64226 Mlst8 gucguACCUCAGGAGGUCCAAc || | :: ||||||| gugauUGCUGGUUACCAGGUUu 2 18 900 921 [rn4:10:13725711-13725732:-] 0.5142 145 7 -14.87 -0.2118 MIMAT0012824 rno-miR-513 64226 Mlst8 uacuuucuGUGGAAGAACACUu | || ||||||| aacccucuCCCCCACUUGUGAu 2 15 883 904 [rn4:10:13725728-13725749:-] 0.5218 146 7 -11.32 -0.2674 MIMAT0012836 rno-miR-628 64226 Mlst8 ggagagCAUUUAU-ACAGUCGUa ||:|: | |||||||| ccugcaGUGAGCAGUGUCAGCAu 2 17 448 470 [rn4:10:13726162-13726184:-] 0.5588 155 7 -21.71 -0.1546 MIMAT0012853 rno-miR-761 64226 Mlst8 acacAGU-CAAAGU--GGGACGACg ||| | | || |||||||| ugcuUCAUGCUGCAGCCCCUGCUGa 2 19 713 737 [rn4:10:13725895-13725919:-] 0.5294 152 7 -20.03 -0.1047 MIMAT0012856 rno-miR-759 64226 Mlst8 caguuuuaACAAACGUGAGACg | ||| ||||||| uccugcccUCUUUCCACUCUGc 2 15 358 379 [rn4:10:13726253-13726274:-] 0.5335 154 7 -14.06 -0.1764 MIMAT0000560 rno-miR-326 64226 Mlst8 ugaccuccuucccGGGUCUCc ||||||| uugaugccuguauCCCAGAGc 2 9 321 341 [rn4:10:13726291-13726293,13727431-13727448:-] 0.5254 140 7 -13.30 -0.2169 MIMAT0000566 rno-miR-329 64226 Mlst8 uuuuuccAAUCGACCCACACAa || || ||||||| cagauuuUUUUCUUGGUGUGUu 2 16 1032 1053 [rn4:10:13725579-13725600:-] 0.5060 151 7 -13.94 -0.7039 MIMAT0004641 rno-miR-330 64226 Mlst8 cggauucuguguccGGGUCUCu ||||||| guugaugccuguauCCCAGAGc 2 9 320 341 [rn4:10:13726291-13726293,13727431-13727449:-] 0.5254 140 7 -18.13 -0.2169 MIMAT0000579 rno-miR-148b-3p 64226 Mlst8 uguuucAAGACACUACGUGACu || | | ||||||| ugccccUUGAGGGCUGCACUGg 2 17 5 26 [rn4:10:13727743-13727764:-] 0.7596 148 7 -19.30 -0.1034 MIMAT0000579 rno-miR-148b-3p 64226 Mlst8 uguuucAAGAC-ACUACGUGACu | ||| |||||||| agccccUGCUGACAAUGCACUGa 2 17 726 748 [rn4:10:13725884-13725906:-] 0.5294 147 7 -18.08 -0.4620 MIMAT0000589 rno-miR-342-3p 64226 Mlst8 ugCCC--ACGCUAAAGACACACUCu ||| | :|: | |||||||| auGGGAUUUUGGAGUGUGUGUGAGc 2 22 950 974 [rn4:10:13725658-13725682:-] 0.5142 152 7 -23.09 -0.3783 MIMAT0000608 rno-miR-351 64226 Mlst8 agUCCGAG-UUUC--CCGAG-GAGUCCCu || ||| ::|| | ||: ||||||| agAGACUCGGGAGCCGACUUGCUCAGGGa 2 24 558 586 [rn4:10:13726046-13726074:-] 0.5294 156 7 -25.89 -0.1860 MIMAT0000798 rno-miR-27b 64226 Mlst8 cgUCUUGAAUCGGUGAC-ACUu || :|||:| |||| ||| agAGUGCUUGG-AACUGUUGAg 2 20 289 309 [rn4:10:13727460-13727480:-] 0.5173 121 0 -16.52 -0.2094 MIMAT0000801 rno-miR-29b 64226 Mlst8 uugugaCUAAAGUUUACCAC-GAu ||| :|::||||| || gcugagGAUGGUAGGUGGUGACUc 2 18 591 614 [rn4:10:13726018-13726041:-] 0.5294 121 0 -17.78 -0.1915 MIMAT0000802 rno-miR-29a 64226 Mlst8 auuggCUAAAGUCUACCAC-GAu ||| :||:||||| || cugagGAUGGUAGGUGGUGACUc 2 18 592 614 [rn4:10:13726018-13726040:-] 0.5294 125 0 -18.99 -0.1915 MIMAT0000803 rno-miR-29c 64226 Mlst8 auuggCUAAAGUUUACCAC-GAu ||| :|::||||| || cugagGAUGGUAGGUGGUGACUc 2 18 592 614 [rn4:10:13726018-13726040:-] 0.5294 121 0 -16.39 -0.1915 MIMAT0000812 rno-miR-33 64226 Mlst8 acguuacGUUGA-UGUUACGUg | :|| |||||||| gcagcccCUGCUGACAAUGCAc 2 15 724 745 [rn4:10:13725887-13725908:-] 0.5294 149 7 -18.45 -0.2118 MIMAT0000824 rno-miR-103 64226 Mlst8 agUAUCGGGACAUGUUACGACGa :|: ||||| : ||||||| auGUGCCCCUGCUUCAUGCUGCa 2 22 704 726 [rn4:10:13725906-13725928:-] 0.5294 161 7 -20.50 -0.1350 MIMAT0000826 rno-miR-107 64226 Mlst8 acUAUCGGGACAUGUUACGACGa :|: ||||| : ||||||| auGUGCCCCUGCUUCAUGCUGCa 2 22 704 726 [rn4:10:13725906-13725928:-] 0.5294 161 7 -20.33 -0.1350 MIMAT0000829 rno-miR-125a-5p 64226 Mlst8 aguguccaauuucccaGAGUCCCu ||||||| cucgggagccgacuugCUCAGGGa 2 9 563 586 [rn4:10:13726046-13726069:-] 0.5294 140 7 -21.57 -0.1878 MIMAT0004729 rno-miR-125a-3p 64226 Mlst8 ccgaggguuCUUGGAGUGGACa |: |:||||||| gcaggguuuGGUCUUCACCUGa 2 14 504 525 [rn4:10:13726107-13726128:-] 0.5294 149 7 -20.41 -0.2825 MIMAT0000830 rno-miR-125b-5p 64226 Mlst8 aguguucaaucccaGAGUCCCu ||||||| cgggagccgacuugCUCAGGGa 2 9 565 586 [rn4:10:13726046-13726067:-] 0.5294 140 7 -19.72 -0.1860 MIMAT0000854 rno-miR-152 64226 Mlst8 gguucAAGACAG-UACGUGACu | ||| | |||||||| gccccUGCUGACAAUGCACUGa 2 17 727 748 [rn4:10:13725884-13725905:-] 0.5294 155 7 -21.00 -0.4620 MIMAT0000854 rno-miR-152 64226 Mlst8 gguucaagacaguACGUGACu ||||||| gccccuugagggcUGCACUGg 2 9 6 26 [rn4:10:13727743-13727763:-] 0.7596 140 7 -17.17 -0.1034 MIMAT0000862 rno-miR-185 64226 Mlst8 agUCCUUGACGGAAAGA-GAGGu :| :||| ||| ||| |||| guGGUGACU-CCUGUCUCCUCCu 2 21 605 626 [rn4:10:13726006-13726027:-] 0.5294 126 0 -18.74 -0.2592 MIMAT0000885 rno-miR-214 64226 Mlst8 gacgGACAGACACGGACGACa ||| | | ||||||| caugCUG-CAGCCCCUGCUGa 2 18 718 737 [rn4:10:13725895-13725914:-] 0.5294 147 7 -17.73 -0.1036 MIMAT0004742 rno-miR-296 64226 Mlst8 ccUCUCGGAGGUGGGUUGGGAg |||||| | ||||||| ucAGAGCCAGGA--CAACCCUc 2 21 870 889 [rn4:10:13725743-13725762:-] 0.5294 153 7 -25.06 -0.1009 MIMAT0003117 rno-miR-361 64226 Mlst8 cauGGGGAC-CUCUAAGACUAUu :||| | || ||||||| ccuUCCCAGCCAGUAUCUGAUAg 2 20 841 863 [rn4:10:13725769-13725791:-] 0.5294 150 7 -16.09 -0.1751 MIMAT0003119 rno-miR-224 64226 Mlst8 auuugccUUGGUGAUCACUGAAc ::||| :||||||| aggucuuGGCCA-GGGUGACUUu 2 17 998 1019 [rn4:10:13725613-13725634:-] 0.5060 146 7 -15.81 -0.1064 MIMAT0003123 rno-miR-377 64226 Mlst8 gguuuucAACGGAAACACACUa | | | ||||||| gggauuuUGGAGUGUGUGUGAg 2 16 952 973 [rn4:10:13725659-13725680:-] 0.5142 143 7 -11.65 -0.1274 MIMAT0003203 rno-miR-485 64226 Mlst8 cuuaaguAGUGCCGGUCGGAGa ||| ||:||||||| gugagacUCA-GGUCAGCCUCu 2 16 90 110 [rn4:10:13727659-13727679:-] 0.5173 157 7 -25.15 -0.2101

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G052085 Mlst8 Rattus norvegicus 64226

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Mlst8 RAID00121399 rno-miR-29c-3p miRNA MIMAT0000803 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID00187074 rno-miR-33-5p miRNA MIMAT0000812 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID00246519 rno-miR-148a-3p miRNA MIMAT0035725 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID00404365 rno-miR-128-1-5p miRNA MIMAT0017118 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID00423192 rno-miR-666-3p miRNA MIMAT0017371 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID00718418 rno-miR-128-2-5p miRNA MIMAT0017119 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID00806024 rno-miR-329-3p miRNA MIMAT0000566 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID00943777 rno-miR-29a-3p miRNA MIMAT0000802 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01105072 rno-miR-485-5p miRNA MIMAT0003203 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01220962 rno-miR-3575 miRNA MIMAT0017861 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01285605 rno-miR-224-5p miRNA MIMAT0003119 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01392973 rno-miR-325-3p miRNA MIMAT0004639 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01496096 rno-miR-296-3p miRNA MIMAT0004742 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01575834 rno-miR-423-5p miRNA MIMAT0017305 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01619181 rno-miR-377-3p miRNA MIMAT0003123 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01655335 rno-miR-125b-5p miRNA MIMAT0000830 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01720798 rno-miR-3552 miRNA MIMAT0017813 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01729391 rno-miR-107-3p miRNA MIMAT0000826 Mlst8 mRNA 64226 Prediction 0.2202 Mlst8 RAID01956528 rno-miR-342-3p miRNA MIMAT0000589 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID01957952 rno-miR-3594-5p miRNA MIMAT0017898 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID02056720 rno-miR-711 miRNA MIMAT0012859 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID02099164 rno-miR-3576 miRNA MIMAT0017862 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID02150502 rno-miR-125a-5p miRNA MIMAT0000829 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID02287022 rno-miR-361-5p miRNA MIMAT0003117 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID02292178 rno-miR-185-5p miRNA MIMAT0000862 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID02328798 rno-miR-29b-3p miRNA MIMAT0000801 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID02613349 rno-miR-148b-3p miRNA MIMAT0000579 Mlst8 mRNA 64226 Prediction 0.2202 Mlst8 RAID02851091 rno-miR-3085 miRNA MIMAT0017805 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID02854843 rno-miR-125a-3p miRNA MIMAT0004729 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID03021471 rno-miR-351-5p miRNA MIMAT0000608 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID03140783 rno-miR-92a-1-5p miRNA MIMAT0017107 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID03252843 rno-miR-27b-3p miRNA MIMAT0000798 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID03411030 rno-miR-326-3p miRNA MIMAT0000560 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID03419830 rno-miR-103-3p miRNA MIMAT0000824 Mlst8 mRNA 64226 Prediction 0.2202 Mlst8 RAID03474710 rno-miR-3573-5p miRNA MIMAT0017856 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID03591369 rno-miR-6318 miRNA MIMAT0025055 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID03674450 rno-miR-330-5p miRNA MIMAT0004641 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID03810641 rno-miR-214-3p miRNA MIMAT0000885 Mlst8 mRNA 64226 Prediction 0.1828 Mlst8 RAID03912907 rno-miR-152-3p miRNA MIMAT0000854 Mlst8 mRNA 64226 Prediction 0.2202 Mlst8 RAID04013210 rno-miR-296-5p miRNA MIMAT0000898 Mlst8 mRNA 64226 Prediction 0.1828