DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000592 rno-miR-344-3p 304798 Mdm4 ugccaguCCGAAACCGAUCUAGu || || :|||||| cauauauGGAAUU--UUAGAUCa 2 17 191 211 [rn4:13:45895934-45895954:-] 0.4747 125 6 -11.86 -0.1049 MIMAT0000899 rno-miR-297 304798 Mdm4 guacgUAUG--UACGUGUGUA-UGUa |||| || || |||| ||| caauaAUACCAAUACAAACAUAACAa 2 19 284 309 [rn4:13:45895836-45895861:-] 0.4954 125 0 -10.73 -0.6887 MIMAT0000901 rno-miR-299 304798 Mdm4 uacauacacCCUGCCAUUUGGu | |: ||||||| uuuccuuccGAAUUGUAAACCc 2 14 256 277 [rn4:13:45895868-45895889:-] 0.4747 145 7 -7.55 -0.6498 MIMAT0003115 rno-miR-207 304798 Mdm4 uucccuccucucggucCUCUUCg |||||| ugaggguuucauugauGAGAAGa 2 8 216 238 [rn4:13:45895907-45895929:-] 0.4747 120 6 -15.49 -0.1349 MIMAT0003116 rno-miR-501 304798 Mdm4 aaagUGGGUCCCUG--UUUCCUAa |||: || : ||||||| ugagACCUCGGUCUUAAAAGGAUc 2 19 113 136 [rn4:13:45896009-45896032:-] 0.4747 145 7 -14.72 -0.5155 MIMAT0004791 rno-miR-379* 304798 Mdm4 caaucaccugguacaAUGUAUc |||||| ucauugaugagaagaUACAUAa 2 8 224 245 [rn4:13:45895900-45895921:-] 0.4747 120 6 -5.04 -0.1175 MIMAT0012825 rno-miR-105 304798 Mdm4 ugguGUCUGUAGACUCGU-GAAc ||| :|| |||||| ||| ggauCAG-UAU-UGAGCAUCUUu 2 19 132 152 [rn4:13:45895993-45896013:-] 0.4747 122 0 -13.84 -1.0104 MIMAT0012831 rno-miR-544 304798 Mdm4 cucgAACGAUUUUUACGUCUUa ||| |: ||||||: ----UUGAGUCAGUUGCAGAGa 2 19 1 18 [rn4:13:45896127-45896144:-] 0.6044 130 0 -10.05 -0.1811 MIMAT0012847 rno-miR-293 304798 Mdm4 guUUCACAGUGU-GUC-AAACUCa :| | |:| | ||| |||||| ugGAAUUUUAGAUCAGUUUUGAGg 2 21 197 220 [rn4:13:45895925-45895948:-] 0.4747 123 6 -9.64 -0.7077 MIMAT0012848 rno-miR-294 304798 Mdm4 ucUAUCCCGGAGG-UAAAACUc | | | :: || ||||||| gcAGAAGAUUACCAAUUUUGAu 2 20 72 93 [rn4:13:45896052-45896073:-] 0.4747 146 7 -8.63 -0.4901 MIMAT0012851 rno-miR-547 304798 Mdm4 gagugaauuUCUUCAUGGUu ||:||||||| agaaauacuAGGAGUACCAg 2 12 16 35 [rn4:13:45896110-45896129:-] 0.4747 151 7 -19.20 -0.1844 MIMAT0012857 rno-miR-678 304798 Mdm4 ggAGG-UCAGGAACGGGGCUCUg ||| | |: | ||||||| cuUCCGAAUUGUAAACCCGAGAg 2 21 260 282 [rn4:13:45895863-45895885:-] 0.4747 147 7 -23.08 -0.7752 MIMAT0000602 rno-miR-20a 304798 Mdm4 gauggacGUGAU-AUUCGU-GAAAu || || |:|||| |||| aaaggauCAGUAUUGAGCAUCUUUu 2 17 129 153 [rn4:13:45895992-45896016:-] 0.4747 123 0 -12.67 -0.8764 MIMAT0000786 rno-miR-17-5p 304798 Mdm4 gaUGGACGUGACAUUCGU-GAAAc |:| |:|:|| |||| |||| ggAUCAGUAUUG--AGCAUCUUUu 2 22 132 153 [rn4:13:45895992-45896013:-] 0.4747 126 0 -13.11 -0.8730 MIMAT0000790 rno-miR-21 304798 Mdm4 aguUGU-AGUCAGACUAUUCGau |:| |:| |: |||||| uauAUAUUUAUUUAUAUAAGCau 3 20 171 193 [rn4:13:45895952-45895974:-] 0.4747 130 0 -5.79 -0.1282 MIMAT0000792 rno-miR-23a 304798 Mdm4 ccuuUAGGGACCG-UUACACUa |||::| : ||||||| gagcAUCUUUUAUAAAUGUGAc 2 18 143 164 [rn4:13:45895981-45896002:-] 0.4747 148 7 -11.96 -0.8903 MIMAT0000793 rno-miR-23b 304798 Mdm4 ccauUAGGGACCG-UUACACUa |||::| : ||||||| gagcAUCUUUUAUAAAUGUGAc 2 18 143 164 [rn4:13:45895981-45896002:-] 0.4747 148 7 -11.18 -0.8903 MIMAT0000812 rno-miR-33 304798 Mdm4 acGUUACG-UUG-A-UGUUACGug |||| | ||| | ||||||| acCAAUACAAACAUAACAAUGC-- 3 20 291 312 [rn4:13:45895833-45895854:-] 0.5162 140 0 -11.04 -0.1295 MIMAT0000825 rno-miR-106b 304798 Mdm4 uaGACGUGACAGUCGU-GAAAu | |:|:|| |||| |||| auCAGUAUUG--AGCAUCUUUu 2 20 134 153 [rn4:13:45895992-45896011:-] 0.4747 120 0 -13.08 -0.8730 MIMAT0000843 rno-miR-137 304798 Mdm4 gaUGCGCAUAAG-A-AUUCGU-UAUu |: : ||||: | |||||| ||| auAUAUUUAUUUAUAUAAGCAUAUAu 2 22 172 197 [rn4:13:45895948-45895973:-] 0.4747 123 0 -5.07 -0.8317 MIMAT0000873 rno-miR-200c 304798 Mdm4 gguAGUAAUGGGCCGUCAUAAu |:|| | | ||||||| cauUUAUCAAAAGUCAGUAUUc 2 20 38 59 [rn4:13:45896086-45896107:-] 0.4747 151 7 -10.13 -0.7204 MIMAT0000873 rno-miR-200c 304798 Mdm4 ggUAGUAAUGGGCC--GUCAUAAu :|| ||| || ||||||| cgGUC-UUAAAAGGAUCAGUAUUg 2 21 121 143 [rn4:13:45896002-45896024:-] 0.4747 145 7 -13.46 -0.5248 MIMAT0000875 rno-miR-200b 304798 Mdm4 caGU-AGUAAUGGUCCGUCAUAAu || |:|| | || ||||||| guCAUUUAUCAAAAGUCAGUAUUc 2 22 36 59 [rn4:13:45896086-45896109:-] 0.4747 160 7 -14.20 -0.7204 MIMAT0000875 rno-miR-200b 304798 Mdm4 cagUAGUAAUGGUCC--GUCAUAAu :|| ||| ||| ||||||| ucgGUC-UUAAAAGGAUCAGUAUUg 2 21 120 143 [rn4:13:45896002-45896025:-] 0.4747 153 7 -16.16 -0.5248 MIMAT0000887 rno-miR-217 304798 Mdm4 uaggucaGUCAAGGACUAC-GUCAu || || :||||| |||| agauuacCAAUU-UUGAUGCCAGUc 2 18 77 100 [rn4:13:45896045-45896068:-] 0.4747 123 0 -14.08 -0.2482 MIMAT0001538 rno-miR-429 304798 Mdm4 ugCCGUAAUGGUCU--GUCAUAAu ||: ||| ||: ||||||| ucGGUCUUAAAAGGAUCAGUAUUg 2 21 120 143 [rn4:13:45896002-45896025:-] 0.4747 155 7 -19.45 -0.5248 MIMAT0001538 rno-miR-429 304798 Mdm4 ugccGUAAUGGUCUGUCAUAAu :|| | || ||||||| cauuUAUCAAAAGUCAGUAUUc 2 19 38 59 [rn4:13:45896086-45896107:-] 0.4747 154 7 -10.42 -0.7204 MIMAT0003211 rno-miR-20b-5p 304798 Mdm4 uggacGUGAU-ACUCGU-GAAAc || || |||||| |||| aggauCAGUAUUGAGCAUCUUUu 2 17 131 153 [rn4:13:45895992-45896014:-] 0.4747 127 0 -13.04 -0.8764 MIMAT0005311 rno-miR-410 304798 Mdm4 uguccgguagacacAAUAUAa |||||| ucauauauauuuauUUAUAUa 2 8 168 188 [rn4:13:45895957-45895977:-] 0.4747 120 6 -5.86 -0.1386

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G043015 Mdm4 Rattus norvegicus 304798

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Mdm4 RAID00137030 rno-miR-185-3p miRNA MIMAT0017142 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID00562548 rno-miR-217-5p miRNA MIMAT0000887 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID01208616 rno-miR-20a-5p miRNA MIMAT0000602 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID01330743 rno-miR-137-3p miRNA MIMAT0000843 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID01354944 rno-miR-129-5p miRNA MIMAT0000600 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID01604182 rno-miR-501-5p miRNA MIMAT0003116 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID01747710 rno-miR-23a-3p miRNA MIMAT0000792 Mdm4 mRNA 304798 Prediction 0.2202 Mdm4 RAID01969250 rno-miR-410-3p miRNA MIMAT0005311 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID02047115 rno-miR-23b-3p miRNA MIMAT0000793 Mdm4 mRNA 304798 Prediction 0.2202 Mdm4 RAID02529226 rno-miR-20b-5p miRNA MIMAT0003211 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID03173695 rno-miR-294 miRNA MIMAT0012848 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID03176482 rno-miR-17-5p miRNA MIMAT0000786 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID03266713 rno-miR-871-3p miRNA MIMAT0017289 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID03336901 rno-miR-429 miRNA MIMAT0001538 Mdm4 mRNA 304798 Prediction 0.2202 Mdm4 RAID03417702 rno-miR-200c-3p miRNA MIMAT0000873 Mdm4 mRNA 304798 Prediction 0.2202 Mdm4 RAID03480368 rno-miR-33-5p miRNA MIMAT0000812 Mdm4 mRNA 304798 Prediction 0.2202 Mdm4 RAID03504212 rno-miR-106b-5p miRNA MIMAT0000825 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID03524105 rno-miR-21-5p miRNA MIMAT0000790 Mdm4 mRNA 304798 Prediction 0.1828 Mdm4 RAID03531593 rno-miR-200b-3p miRNA MIMAT0000875 Mdm4 mRNA 304798 Prediction 0.2202