DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 116659 Dync1i2 acAACGUCGCGAAGUACAAa || :| |:|||||||| ugUUUUA-AGUUUCAUGUUg 2 19 456 474 [rn4:3:53533138-53533156:+] 0.5352 152 7 -13.06 -0.8555 MIMAT0000557 rno-miR-325-5p 116659 Dync1i2 uguGAAUGACUCGUG---GAUGAUcc ||| :||| | : |||||| auuCUU-UUGAACUUGUACUACUAua 3 21 270 294 [rn4:3:53532952-53532976:+] 0.5880 125 0 -9.44 -0.4022 MIMAT0000568 rno-miR-330* 116659 Dync1i2 agaGACGUCCGGGACACGAAACg :| :| |||| ||||||| auaUUCUAUUCCCUUUGCUUUGg 2 21 153 175 [rn4:3:53532835-53532857:+] 0.5880 160 7 -18.97 -0.9125 MIMAT0000577 rno-miR-337 116659 Dync1i2 uuuCCGUAGUA--UAUCCUCGACUu | |||: | ||| |||||| gguGUCAUUUUUAAUA-CAGCUGAc 2 21 179 202 [rn4:3:53532861-53532884:+] 0.5880 121 6 -12.54 -0.1292 MIMAT0004645 rno-miR-148b-5p 116659 Dync1i2 ggacucacauauuguCUUGAAg |||||| cuuuuggauucuuuuGAACUUg 2 8 263 284 [rn4:3:53532945-53532966:+] 0.5880 120 6 -6.33 -0.2125 MIMAT0004646 rno-miR-338* 116659 Dync1i2 guGAG-UCGUG-GUCC---UAUAACAa :|| | ||| ::|| ||||||| aaUUCUAACACAUGGGUGUAUAUUGUu 2 21 229 255 [rn4:3:53532911-53532937:+] 0.5880 145 7 -14.47 -1.1122 MIMAT0000603 rno-miR-20a* 116659 Dync1i2 acaUUCACGAGCAUUACGUCa || | : | ||||||| gacAACUUUACAGAAUGCAGc 2 19 200 220 [rn4:3:53532882-53532902:+] 0.5880 146 7 -9.65 -0.5843 MIMAT0000610 rno-miR-352 116659 Dync1i2 auGAUACGUUGG--AUGAUGAga || | |||: ||||||| uuCUUUUGAACUUGUACUACUau 3 20 271 293 [rn4:3:53532953-53532975:+] 0.5880 134 0 -10.96 -0.2117 MIMAT0000847 rno-miR-142-5p 116659 Dync1i2 ucAUCACGAA-A-GAUGAAAUAc | | ||| | ||||| ||| uuUUGAACUUGUACUACUAUAUa 2 20 274 296 [rn4:3:53532956-53532978:+] 0.5880 121 0 -7.67 -0.1142 MIMAT0004738 rno-miR-199a-3p 116659 Dync1i2 auuggUUACACGUCUGAUGAca || ||: |||||| uuuugAACUUGU--ACUACUau 3 18 274 293 [rn4:3:53532956-53532975:+] 0.5880 122 0 -6.88 -0.1971 MIMAT0000899 rno-miR-297 116659 Dync1i2 guacGUAU-GUACG-UGUGU-AUGUa | || :|||| |:||| |||| guccCUUAUUAUGCAAUACAGUACAu 2 20 352 377 [rn4:3:53533034-53533059:+] 0.5616 125 0 -15.38 -0.4694 MIMAT0003113 rno-miR-489 116659 Dync1i2 cgACGGUAUAUACACUACAGUAa |||: |: || ||:|||||| uuUGCUUUGGAU-UGGUGUCAUu 2 22 166 187 [rn4:3:53532848-53532869:+] 0.5880 151 6 -17.61 -0.1021 MIMAT0003162 rno-miR-1* 116659 Dync1i2 cccaUGUAUUUCUUCAUACACg |:| ||| || |||||| auaaAUAAAAACAAAUAUGUGc 2 19 513 534 [rn4:3:53533195-53533216:+] 0.5352 138 6 -9.61 -0.3363 MIMAT0005281 rno-miR-871 116659 Dync1i2 acacugGCCGUGGUUAGACUUAu | || |: ||||||| agaaugCAGC-CUUUUCUGAAUu 2 18 211 232 [rn4:3:53532893-53532914:+] 0.5880 143 7 -15.03 -0.8696 MIMAT0005283 rno-miR-872* 116659 Dync1i2 uccuccGAUGACGUUAUCAAGu || || | ||||||| guuuucCUUCU-CUAUAGUUCa 2 17 480 500 [rn4:3:53533162-53533182:+] 0.5352 150 7 -11.36 -1.0973 MIMAT0005289 rno-miR-881 116659 Dync1i2 agAU-AAGUCUUUACGGUGUCAa || ||| ||: |||||||| caUAUUUCUAAAGAGCCACAGUc 2 21 332 354 [rn4:3:53533014-53533036:+] 0.5880 163 7 -16.86 -0.4809 MIMAT0005313 rno-miR-423 116659 Dync1i2 ugacuccccggagucUGGCUCGa ||||||| caggaagcaaagcuuACCGAGCc 2 9 125 147 [rn4:3:53532807-53532829:+] 0.5880 140 7 -21.72 -0.8532 MIMAT0012827 rno-miR-1224 116659 Dync1i2 gaGGUGGAG-GGGU-CAGGAGUg || : || ::| ||||||| guCCUUGUCAGUUAUGUCCUCAc 2 20 380 402 [rn4:3:53533062-53533084:+] 0.5352 141 7 -22.58 -0.5645 MIMAT0012848 rno-miR-294 116659 Dync1i2 ucuaucccggagguAAAACUc |||||| auucuuuuggauucUUUUGAa 2 8 260 280 [rn4:3:53532942-53532962:+] 0.5880 120 6 -7.32 -0.2478 MIMAT0012850 rno-miR-465 116659 Dync1i2 guguggucguggcAAGAUUUau ||||||| uauauauaauuauUUCUAAAgc 3 10 291 312 [rn4:3:53532973-53532994:+] 0.5880 125 0 -6.22 -0.1388 MIMAT0012852 rno-miR-667 116659 Dync1i2 gaacccgacccaccguCCACAGu |||||| cccuuugcuuuggauuGGUGUCa 2 8 163 185 [rn4:3:53532845-53532867:+] 0.5880 120 6 -19.12 -0.2140 MIMAT0001619 rno-miR-322 116659 Dync1i2 agGUUUUGUACUUAACG-ACGAc | |||| | | |||| |||| ucCUAAAC-U-AUUUGCAUGCUu 2 21 53 73 [rn4:3:53532735-53532755:+] 0.6158 120 0 -12.82 -1.0507 MIMAT0001619 rno-miR-322 116659 Dync1i2 agGUUUUGUACUUAACG-ACGAc | |||| | | |||| |||| ucCUAAAC-U-AUUUGCAUGCUu 2 21 53 73 [rn4:3:53532735-53532755:+] 0.6158 120 0 -12.82 -1.1566 MIMAT0000787 rno-miR-18a 116659 Dync1i2 gaUAGACGUGAUCUACGU-GGAAu | || :|| : ||||| |||| acAACUUUACAGAAUGCAGCCUUu 2 22 201 224 [rn4:3:53532883-53532906:+] 0.5880 129 0 -16.22 -0.8529 MIMAT0000814 rno-miR-34c 116659 Dync1i2 cguUAGUCGAU--UGAUGUGACGGa :||||:|| | ||||||| cuuGUCAGUUAUGUCCUCACUGCCc 2 21 383 407 [rn4:3:53533065-53533089:+] 0.5352 155 7 -22.63 -0.4440 MIMAT0000815 rno-miR-34a 116659 Dync1i2 uguUGGUCGAUUC---UGUGACGGu ::|||:|| | ||||||| cuuGUCAGUUAUGUCCUCACUGCCc 2 20 383 407 [rn4:3:53533065-53533089:+] 0.5352 150 7 -20.24 -0.4407 MIMAT0000855 rno-miR-153 116659 Dync1i2 cuagugaaaacACUGAUACGUu | |:|||||| gccacagucccUUAUUAUGCAa 2 12 346 367 [rn4:3:53533028-53533049:+] 0.5616 131 6 -11.00 -0.1134 MIMAT0000863 rno-miR-186 116659 Dync1i2 ucggguuuuccuCUUAAGAAAc |:||||||| aauuauucuuuuGGAUUCUUUu 2 11 256 277 [rn4:3:53532938-53532959:+] 0.5880 146 7 -8.75 -0.8885 MIMAT0000863 rno-miR-186 116659 Dync1i2 ucggguuuuccucuUAAGAAAc ||||||| guauauuguuaauuAUUCUUUu 2 9 246 267 [rn4:3:53532928-53532949:+] 0.5880 140 7 -5.60 -1.1478 MIMAT0000877 rno-miR-204 116659 Dync1i2 uccguaUCCUACUGUUUC-CCUu || ||:||||| ||| uuaucgAGUCUGGCAAAGAGGAu 2 17 22 44 [rn4:3:53532704-53532726:+] 0.6158 124 0 -15.79 -0.4372 MIMAT0000877 rno-miR-204 116659 Dync1i2 uccguaUCCUACUGUUUC-CCUu || ||:||||| ||| uuaucgAGUCUGGCAAAGAGGAu 2 17 22 44 [rn4:3:53532704-53532726:+] 0.6158 124 0 -15.79 -0.5355 MIMAT0000882 rno-miR-211 116659 Dync1i2 uccguUUCCUACUGUUUC-CCUu :|| ||:||||| ||| uuaucGAGUCUGGCAAAGAGGAu 2 18 22 44 [rn4:3:53532704-53532726:+] 0.6158 125 0 -16.55 -0.4372 MIMAT0000882 rno-miR-211 116659 Dync1i2 uccguUUCCUACUGUUUC-CCUu :|| ||:||||| ||| uuaucGAGUCUGGCAAAGAGGAu 2 18 22 44 [rn4:3:53532704-53532726:+] 0.6158 125 0 -16.55 -0.5355 MIMAT0000888 rno-miR-218 116659 Dync1i2 ugUACCAAUCUAG--UUCGUGUu || ||| || ||||||| auAUAAUUAUUUCUAAAGCACAg 2 20 294 316 [rn4:3:53532976-53532998:+] 0.5880 150 7 -10.86 -1.1603 MIMAT0001534 rno-miR-448 116659 Dync1i2 uacccuguaggauguAUACGUu |||||| gccacagucccuuauUAUGCAa 2 8 346 367 [rn4:3:53533028-53533049:+] 0.5616 120 6 -13.30 -0.1101 MIMAT0001543 rno-miR-449a 116659 Dync1i2 ugGUCGAU-UGUUAUGUGACGGu |||:|| :: | ||||||| guCAGUUAUGUCCU-CACUGCCc 2 21 386 407 [rn4:3:53533068-53533089:+] 0.5352 149 7 -21.03 -0.4159 MIMAT0003114 rno-miR-383 116659 Dync1i2 ucGGUGUCAGUG-GAAGACUAGa |:|: ||: ||||||||: aaCUAUUUGCAUGCUUCUGAUUa 2 21 58 80 [rn4:3:53532740-53532762:+] 0.6158 139 0 -16.99 -0.1569 MIMAT0003114 rno-miR-383 116659 Dync1i2 ucGGUGUCAGUG-GAAGACUAGa |:|: ||: ||||||||: aaCUAUUUGCAUGCUUCUGAUUa 2 21 58 80 [rn4:3:53532740-53532762:+] 0.6158 139 0 -16.99 -0.2443 MIMAT0003117 rno-miR-361 116659 Dync1i2 caUGG-GGACCU-CUAAGACUAuu ||: ::|| | | ||||||| aaACUAUUUGCAUGCUUCUGAUua 3 21 57 80 [rn4:3:53532739-53532762:+] 0.6158 134 0 -10.79 -0.1569 MIMAT0003117 rno-miR-361 116659 Dync1i2 caUGG-GGACCU-CUAAGACUAuu ||: ::|| | | ||||||| aaACUAUUUGCAUGCUUCUGAUua 3 21 57 80 [rn4:3:53532739-53532762:+] 0.6158 134 0 -10.79 -0.2443 MIMAT0003176 rno-miR-539 116659 Dync1i2 ugugugguuccUAUUAAAGAgg || |||||| uacuauauauaAUUAUUUCUaa 3 12 288 309 [rn4:3:53532970-53532991:+] 0.5880 127 0 -8.52 -0.1911 MIMAT0003196 rno-miR-376b-3p 116659 Dync1i2 uucACCUACAAGGAGAUACUa ||| ||| ||||| | ucaUGGUAGUU-AUCUAUAAa 2 19 498 517 [rn4:3:53533180-53533199:+] 0.5352 120 0 -8.31 -0.1024 MIMAT0003199 rno-miR-381 116659 Dync1i2 cucucGAACGGGAACAUau :||| |||||| auucuUUUGAACUUGUAcu 3 15 270 288 [rn4:3:53532952-53532970:+] 0.5880 130 0 -9.63 -0.1634 MIMAT0003201 rno-miR-382 116659 Dync1i2 gcUUAGGUGGUGCUUGUUGAAg ||| || :| :||||||| uuAAU--ACAGCUGACAACUUu 2 21 189 208 [rn4:3:53532871-53532890:+] 0.5880 153 7 -11.53 -0.6263 MIMAT0005314 rno-miR-425 116659 Dync1i2 aguugcccucaCUAG-CACAGUAa |||: ||||||| ccuuugcuuugGAUUGGUGUCAUu 2 13 164 187 [rn4:3:53532846-53532869:+] 0.5880 147 7 -14.71 -0.9841

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055305 Dync1i2 Rattus norvegicus 116659

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Dync1i2 RAID00140271 rno-miR-153-3p miRNA MIMAT0000855 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID00158474 rno-miR-322-5p miRNA MIMAT0001619 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID00173040 rno-miR-871-5p miRNA MIMAT0005281 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID00197362 rno-miR-3552 miRNA MIMAT0017813 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID00362413 rno-miR-361-5p miRNA MIMAT0003117 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID00403619 rno-miR-204-5p miRNA MIMAT0000877 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID00816635 rno-miR-743a-5p miRNA MIMAT0017315 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID00977696 rno-miR-374-3p miRNA MIMAT0017223 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID01426392 rno-miR-7578 miRNA MIMAT0029579 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID01646213 rno-miR-539-5p miRNA MIMAT0003176 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID01744264 rno-miR-20a-3p miRNA MIMAT0000603 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID01814681 rno-miR-383-5p miRNA MIMAT0003114 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID02018571 rno-miR-425-5p miRNA MIMAT0005314 Dync1i2 mRNA 116659 Prediction 0.2202 Dync1i2 RAID02142086 rno-miR-872-3p miRNA MIMAT0005283 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID02177020 rno-miR-186-5p miRNA MIMAT0000863 Dync1i2 mRNA 116659 Prediction 0.2202 Dync1i2 RAID02188537 rno-miR-18a-5p miRNA MIMAT0000787 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID02348273 rno-miR-449a-5p miRNA MIMAT0001543 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID02548565 rno-miR-881-5p miRNA MIMAT0017293 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID03214943 rno-miR-382-5p miRNA MIMAT0003201 Dync1i2 mRNA 116659 Prediction 0.2202 Dync1i2 RAID03254597 rno-miR-34a-5p miRNA MIMAT0000815 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID03364483 rno-miR-448-3p miRNA MIMAT0001534 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID03376160 rno-miR-34c-5p miRNA MIMAT0000814 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID03526000 rno-miR-381-3p miRNA MIMAT0003199 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID03534062 rno-miR-376b-3p miRNA MIMAT0003196 Dync1i2 mRNA 116659 Prediction 0.1828 Dync1i2 RAID03643007 rno-miR-218a-5p miRNA MIMAT0000888 Dync1i2 mRNA 116659 Prediction 0.2202 Dync1i2 RAID03953803 rno-miR-211-5p miRNA MIMAT0000882 Dync1i2 mRNA 116659 Prediction 0.1828