DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000563 rno-let-7d* 295106 Ift80 ucUUUCCGUCGUCCAGCAUAUc | || :| :| || |||| gaAUAGCUAUUAAUUCUUAUAa 2 21 365 386 [rn4:2:158892699-158892720:-] 0.5938 120 0 -2.40 -0.1223 MIMAT0000614 rno-miR-151* 295106 Ift80 ggaguuccucggaGUCAGAUc :|||||| auuuauauuuuucUAGUCUAa 2 9 247 267 [rn4:2:158892818-158892838:-] 0.5938 124 6 -10.01 -0.4508 MIMAT0004708 rno-miR-9* 295106 Ift80 ugaAAGCCA-AUAGAUCGA-AAUa ||| || |: ||||| ||| uucUUCAGUAUGAAUAGCUAUUAa 2 20 354 377 [rn4:2:158892708-158892731:-] 0.5938 122 0 -6.09 -1.2801 MIMAT0004715 rno-miR-27a* 295106 Ift80 acgaguGUUCGUC-GAUUCGGGa ||:| || :||||| | uacauuCAGGAAGAUUAAGCACa 2 17 202 224 [rn4:2:158892861-158892883:-] 0.5938 123 0 -11.29 -0.1422 MIMAT0004716 rno-miR-28* 295106 Ift80 agguccucgaguguuAGAUCAc |||||| caucauuuauauuuuUCUAGUc 2 8 243 264 [rn4:2:158892821-158892842:-] 0.5938 120 6 -9.20 -0.5593 MIMAT0004726 rno-miR-101a* 295106 Ift80 cguAGUCGUGACACUAUUGAcu | ||||| |||||| gauUAAGCAC-AAAAUAACUua 3 20 214 234 [rn4:2:158892851-158892871:-] 0.5938 129 0 -9.85 -0.1638 MIMAT0000831 rno-miR-126* 295106 Ift80 gcgcAUGGUUUUCAUUAUUAc | :| |: ||||||| uauuUUUCUAGUCUAAUAAUu 2 18 252 272 [rn4:2:158892813-158892833:-] 0.5938 145 7 -4.88 -1.0242 MIMAT0000847 rno-miR-142-5p 295106 Ift80 ucaucACGAAAG--AUGAAAUAc | :|||| | |||||| aguuuUUUUUUCAUUUCUUUAUu 2 17 326 348 [rn4:2:158892737-158892759:-] 0.5938 123 6 -7.00 -0.1333 MIMAT0005446 rno-miR-219-2-3p 295106 Ift80 ugucuacaggucgGUGUUAAGa |||||||| acaaaauaacuuaCACAAUUCc 2 10 222 243 [rn4:2:158892842-158892863:-] 0.5938 145 7 -11.15 -1.0706 MIMAT0004743 rno-miR-300-5p 295106 Ift80 uguuuccuauuggaGAGAAGUu :|||||| uucuuuauuucuggUUCUUCAg 2 9 340 361 [rn4:2:158892724-158892745:-] 0.5938 124 6 -11.30 -0.1064 MIMAT0001320 rno-miR-421 295106 Ift80 guuGUUUGUAAAUUACUCCGg | |:|| | ||||||| ugcCUAGCA-UGCAUGAGGCc 2 19 114 133 [rn4:2:158892952-158892971:-] 0.5938 148 7 -18.97 -0.1351 MIMAT0003121 rno-miR-483 295106 Ift80 uguucugcccuccccUCCUCACu ||||||| gcuuaucuaugcccuAGGAGUGu 2 9 291 313 [rn4:2:158892772-158892794:-] 0.5938 140 7 -11.74 -0.7156 MIMAT0003378 rno-miR-378* 295106 Ift80 uguguccuggaccucAGUCCUc |||||| auacuuaagguacauUCAGGAa 2 8 192 213 [rn4:2:158892872-158892893:-] 0.5938 120 6 -12.06 -0.1024 MIMAT0005287 rno-miR-879 295106 Ift80 ccGAAUCUCGAUAUUCGGAGa |||| | || ||||||: uuCUUAUA-AUA-AAGCCUUg 2 20 378 396 [rn4:2:158892689-158892707:-] 0.5938 135 0 -9.65 -0.2601 MIMAT0005290 rno-miR-883 295106 Ift80 uaugacUCUCUACAACGU-CAAu | ||||| |||| ||| auaaccAAAGAUG-UGCAUGUUu 2 17 30 51 [rn4:2:158893034-158893055:-] 0.5938 122 0 -12.19 -0.9704 MIMAT0005321 rno-miR-500 295106 Ift80 acuugggaacgggucCACGUAa |||||| ggaauaaccaaagauGUGCAUg 2 8 27 48 [rn4:2:158893037-158893058:-] 0.5938 120 6 -10.84 -0.1217 MIMAT0005322 rno-miR-532-5p 295106 Ift80 ugucaggaugugagUUCCGUAc ||||||| uuugcuuaaaaaaaAAGGCAUa 2 9 54 75 [rn4:2:158893010-158893031:-] 0.5938 140 7 -12.02 -1.3067 MIMAT0005327 rno-miR-672 295106 Ift80 agugugugucaUGUGGUUGGAGu |::|||||||| ------gugccAUGCCAACCUCu 2 13 1 17 [rn4:2:158893068-158893084:-] 0.5938 152 7 -16.31 -1.2097 MIMAT0005332 rno-miR-708* 295106 Ift80 gaucuucgagugucAGAUCAac |||||| aucauuuauauuuuUCUAGUcu 3 9 244 265 [rn4:2:158892820-158892841:-] 0.5938 120 0 -7.81 -0.4908 MIMAT0012825 rno-miR-105 295106 Ift80 ugguguCUGUAGACUCGUGAAc ||:: : |||||||| ucucuuGAUGGUAGAGCACUUg 2 17 94 115 [rn4:2:158892970-158892991:-] 0.5938 152 7 -17.19 -0.2408 MIMAT0012826 rno-miR-220 295106 Ift80 uccaGAGACUGUGA-CACCACc :|:| | :|| |||||| auaaUUUUAAGGCUAGUGGUGu 2 18 73 94 [rn4:2:158892991-158893012:-] 0.5938 121 6 -13.44 -0.6707 MIMAT0012829 rno-miR-511 295106 Ift80 acucACG--UCUCGUUUUCCGUa ||| | | |||||||| uguuUGCUUAAAAAAAAAGGCAu 2 18 52 74 [rn4:2:158893011-158893033:-] 0.5938 148 7 -13.92 -1.2242 MIMAT0012834 rno-miR-592 295106 Ift80 uguaguagcguauaacUGUGUUa |||||| aagcacaaaauaacuuACACAAu 2 8 218 240 [rn4:2:158892845-158892867:-] 0.5938 120 6 -7.59 -0.1346 MIMAT0004650 rno-miR-340-5p 295106 Ift80 uuaGUCAGAGUAACGAAAUAUu || |: || | |||||| acaCAAUUCCA-UCAUUUAUAu 2 20 234 254 [rn4:2:158892831-158892851:-] 0.5938 121 6 -5.08 -0.1615 MIMAT0000602 rno-miR-20a 295106 Ift80 gauggacgUGAUAUUCGUGAAAu | |:|| ||||||| aaagaauaAGUGUAUGCACUUUc 2 16 159 181 [rn4:2:158892904-158892926:-] 0.5938 155 7 -9.93 -0.7856 MIMAT0000611 rno-miR-135b 295106 Ift80 aguguauccUUACUUUUCGGUAu || ||||| ||| guuugcuuaAAAAAAAAGGCAUa 2 15 53 75 [rn4:2:158893010-158893032:-] 0.5938 122 0 -7.85 -0.1127 MIMAT0000781 rno-miR-9 295106 Ift80 aguAUGUCGAUCUAUUGGUUUCu || || : |||||||||| accUAGUGCGGAAUAACCAAAGa 2 21 18 40 [rn4:2:158893045-158893067:-] 0.5938 164 7 -20.71 -1.2019 MIMAT0000786 rno-miR-17-5p 295106 Ift80 gauggacgUGACAUUCGUGAAAc | |||| ||||||| aaagaauaAGUGUAUGCACUUUc 2 16 159 181 [rn4:2:158892904-158892926:-] 0.5938 159 7 -11.80 -0.7820 MIMAT0000810 rno-miR-31 295106 Ift80 gucgAUACGGUCGUAGA-ACGGa |||||: :|||| |||| ucuaUAUGCU--UAUCUAUGCCc 2 19 284 304 [rn4:2:158892781-158892801:-] 0.5938 123 0 -15.43 -1.0605 MIMAT0000817 rno-miR-93 295106 Ift80 gauggacGUGCUUGU-CGUGAAAc :| | ::| ||||||| aaaagaaUAAGUGUAUGCACUUUc 2 17 158 181 [rn4:2:158892904-158892927:-] 0.5938 143 7 -9.93 -0.7856 MIMAT0000825 rno-miR-106b 295106 Ift80 uagacgUGACAGUCGUGAAAu | ||| ||||||| agaauaAGUGUAUGCACUUUc 2 16 161 181 [rn4:2:158892904-158892924:-] 0.5938 151 7 -10.26 -0.7820 MIMAT0000841 rno-miR-135a 295106 Ift80 aguguauccUUAUUUUUCGGUAu || |||||| ||| guuugcuuaAAAAAAAAGGCAUa 2 15 53 75 [rn4:2:158893010-158893032:-] 0.5938 130 0 -9.03 -0.1127 MIMAT0000841 rno-miR-135a 295106 Ift80 aguguauccuUAUU-UUUCGGUAu |||| |||||| | auuaauucuuAUAAUAAAGCCUUg 2 14 373 396 [rn4:2:158892689-158892712:-] 0.5938 124 0 -7.41 -0.1174 MIMAT0000846 rno-miR-141 295106 Ift80 gguagaAAUGGUCUGUCACAau |||:: ||||||| cuugagUUAUU-UACAGUGU-- 3 17 393 411 [rn4:2:158892674-158892692:-] 0.5938 130 0 -9.64 -0.2710 MIMAT0000855 rno-miR-153 295106 Ift80 cuagugaaaacacugAUACGUu |||||| ucaaaagaauaagugUAUGCAc 2 8 156 177 [rn4:2:158892908-158892929:-] 0.5938 120 6 -8.05 -0.1328 MIMAT0000856 rno-miR-154 295106 Ift80 gcuuccGUUGUGCC-UAUUGGau :|:::||| |||||| ucuaccUAGUGCGGAAUAACCaa 3 17 15 37 [rn4:2:158893048-158893070:-] 0.5938 135 0 -15.55 -0.1764 MIMAT0000860 rno-miR-183 295106 Ift80 ucacuuaagaugguCACGGUAu ||||||| --------------GUGCCAUg 2 9 1 8 [rn4:2:158893077-158893084:-] 0.5938 140 7 -11.04 -0.2419 MIMAT0000863 rno-miR-186 295106 Ift80 ucggguuuuccucUUAAGAAac ||||||| augaauagcuauuAAUUCUUau 3 10 363 384 [rn4:2:158892701-158892722:-] 0.5938 125 0 -5.44 -0.3065 MIMAT0000863 rno-miR-186 295106 Ift80 ucggguuuuccucuuAAGAAAc |||||| caguuuuuuuuucauUUCUUUa 2 8 325 346 [rn4:2:158892739-158892760:-] 0.5938 120 6 -4.09 -0.3917 MIMAT0000873 rno-miR-200c 295106 Ift80 gguAGUAAUGGGCCGUCAUAau |: | :::| |||||| uauUUCUGGUUCUUCAGUAUga 3 20 345 366 [rn4:2:158892719-158892740:-] 0.5938 127 0 -11.02 -0.1746 MIMAT0000874 rno-miR-200a 295106 Ift80 uguagCAAUGGUCUGUCACAau ||||:: ||||||| cuugaGUUAUU-UACAGUGU-- 3 18 393 411 [rn4:2:158892674-158892692:-] 0.5938 135 0 -12.77 -0.2687 MIMAT0000875 rno-miR-200b 295106 Ift80 caGUAGUAAUGGUC----CGUCAUAau | |:||| |::| |||||| uuCUUUAUUUCUGGUUCUUCAGUAUga 3 22 340 366 [rn4:2:158892719-158892745:-] 0.5938 128 0 -9.83 -0.1746 MIMAT0000876 rno-miR-203 295106 Ift80 gaUCACCAGGAUUUGUAAAGug ||| |::| |||||| ccAGU-UUUUUUUUCAUUUCuu 3 21 324 344 [rn4:2:158892741-158892761:-] 0.5938 126 0 -7.87 -0.3158 MIMAT0000879 rno-miR-206 295106 Ift80 ggugugugaaggAAUGUAAGGu ||||||||| uaggaguguggaUUACAUUCCa 2 11 305 326 [rn4:2:158892759-158892780:-] 0.5938 150 7 -13.46 -1.2337 MIMAT0000888 rno-miR-218 295106 Ift80 uguaccaaUCUAGUUCGUGUu ||||:||||||| auucaggaAGAUUAAGCACAa 2 14 205 225 [rn4:2:158892860-158892880:-] 0.5938 161 7 -21.39 -1.2415 MIMAT0000895 rno-miR-291a-3p 295106 Ift80 ccgugugUUUCACCUUCGUGAAa | :|| | ||||||| ucucuugAUGGUAG-AGCACUUg 2 17 94 115 [rn4:2:158892970-158892991:-] 0.5938 146 7 -11.90 -0.2225 MIMAT0001534 rno-miR-448 295106 Ift80 uacccuguaggaUGUAUACGUu :::|||||| ucaaaagaauaaGUGUAUGCAc 2 11 156 177 [rn4:2:158892908-158892929:-] 0.5938 126 6 -6.76 -0.1315 MIMAT0001538 rno-miR-429 295106 Ift80 ugccGUAAUGGUC----UGUCAUAau :||| |::| |||||| ucuuUAUUUCUGGUUCUUCAGUAUga 3 19 341 366 [rn4:2:158892719-158892744:-] 0.5938 121 0 -9.46 -0.1746 MIMAT0003125 rno-miR-1 295106 Ift80 uaugugugaagaAAUGUAAGGu ||||||||| uaggaguguggaUUACAUUCCa 2 11 305 326 [rn4:2:158892759-158892780:-] 0.5938 150 7 -13.34 -1.2337 MIMAT0003176 rno-miR-539 295106 Ift80 ugugUGGUUCCUAU-UAAAGAgg |::||| | | |||||| aauaAUUAAGAAAAUAUUUCUau 3 19 266 288 [rn4:2:158892797-158892819:-] 0.5938 137 0 -8.18 -0.1288 MIMAT0003176 rno-miR-539 295106 Ift80 ugugugguuccuAUUAAAGAGg | ||||||: ccaguuuuuuuuUCAUUUCUUu 2 11 324 345 [rn4:2:158892740-158892761:-] 0.5938 126 0 -6.10 -0.1982 MIMAT0003176 rno-miR-539 295106 Ift80 ugugugguuccuAUUAAAGAgg | |||||| uuuuucauuucuUUAUUUCUgg 3 11 332 353 [rn4:2:158892732-158892753:-] 0.5938 122 0 -4.51 -0.1481 MIMAT0003211 rno-miR-20b-5p 295106 Ift80 uggacgUGAUACUCGUGAAAc | |:| ||||||| agaauaAGUGUAUGCACUUUc 2 16 161 181 [rn4:2:158892904-158892924:-] 0.5938 147 7 -9.23 -0.7856 MIMAT0003381 rno-miR-499 295106 Ift80 uuUGUAGUGACGUUCAGAAUu |:||: :| | ||||| | uuAUAUU-UUUCUAGUCUAAu 2 20 249 268 [rn4:2:158892817-158892836:-] 0.5938 121 0 -6.17 -0.1184 MIMAT0005311 rno-miR-410 295106 Ift80 uguccgguagacacAAUAUAa |||||| cacaauuccaucauUUAUAUu 2 8 235 255 [rn4:2:158892830-158892850:-] 0.5938 120 6 -10.31 -0.1980

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099898 Ift80 Rattus norvegicus 295106

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ift80 RAID00543911 rno-miR-410-3p miRNA MIMAT0005311 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID00668168 rno-miR-200b-3p miRNA MIMAT0000875 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID00811580 rno-miR-200c-3p miRNA MIMAT0000873 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID01035826 rno-miR-203a-3p miRNA MIMAT0000876 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID01432619 rno-miR-6216 miRNA MIMAT0024856 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID01452175 rno-miR-499-5p miRNA MIMAT0003381 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID01623797 rno-miR-141-3p miRNA MIMAT0000846 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID01785152 rno-miR-154-5p miRNA MIMAT0000856 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID01921182 rno-miR-20a-5p miRNA MIMAT0000602 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02144067 rno-miR-186-5p miRNA MIMAT0000863 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02375419 rno-miR-93-5p miRNA MIMAT0000817 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02413884 rno-miR-200a-3p miRNA MIMAT0000874 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02420893 rno-miR-20b-5p miRNA MIMAT0003211 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02513896 rno-miR-3473 miRNA MIMAT0024853 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02559186 rno-miR-206-3p miRNA MIMAT0000879 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02576532 rno-miR-17-5p miRNA MIMAT0000786 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02620412 rno-miR-340-5p miRNA MIMAT0004650 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02765050 rno-miR-9a-5p miRNA MIMAT0000781 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02796334 rno-miR-1-3p miRNA MIMAT0003125 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02804343 rno-miR-291a-3p miRNA MIMAT0000895 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID02814765 rno-miR-135a-5p miRNA MIMAT0000841 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID03055614 rno-miR-153-3p miRNA MIMAT0000855 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID03081106 rno-miR-429 miRNA MIMAT0001538 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID03179246 rno-miR-448-3p miRNA MIMAT0001534 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID03247002 rno-miR-31a-5p miRNA MIMAT0000810 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID03288144 rno-miR-183-5p miRNA MIMAT0000860 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID03342858 rno-miR-539-5p miRNA MIMAT0003176 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID03627794 rno-miR-135b-5p miRNA MIMAT0000611 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID03925414 rno-miR-106b-5p miRNA MIMAT0000825 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID04011036 rno-miR-3572 miRNA MIMAT0017853 Ift80 mRNA 295106 Prediction 0.1828 Ift80 RAID04021162 rno-miR-218a-5p miRNA MIMAT0000888 Ift80 mRNA 295106 Prediction 0.1828