DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Zc3hc1 rno-miR-10a 159 190 GUGUUUA---------AGCCUAGAUGUCCCAU :||:: ||||: ||:||||| AGCAGGCCCAGUUCUGUCGGGACUGCAGGGC- Zc3hc1 rno-miR-10b 163 190 -UGUGUUUA---AGCCAAGAUGUCCC- :| ||: |||| ||:||||| GGCCCAGUUCUGUCGGGACUGCAGGGC Zc3hc1 rno-miR-125a 159 190 GUGUCCA-------AUUUCCCAGA-GUCCCU :|||| |: ||| || ||||| AGCAGGCCCAGUUCUGUCGGGACUGCAGGGC Zc3hc1 rno-miR-125b 200 228 AGUGUUCAA---UCCCAG----AGUCCCU |||||| |||||: ||||| CCACAAGACUUGAGGGUUUGGUUCAGGC- Zc3hc1 rno-miR-133a 104 125 UGUCG-ACCAAC-UUCCCCUGGUU || ||| :|||||||| --UGCAUGGCAAAGAGGGGACCC- Zc3hc1 rno-miR-133b 104 125 AUCG-ACCAAC-UUCCCCUGGUU || ||| :|||||||| -UGCAUGGCAAAGAGGGGACCC- Zc3hc1 rno-miR-141 214 235 GGUAGAAAUGGUCUGUCACAAU :|:| :|||:||||||| -GGUUUGGUUCAGGCAGUGUUC Zc3hc1 rno-miR-152 164 185 -GGGUUCAAGACAGUACGUGACU ||| |||||||||: | |||| GCCC-AGUUCUGUCG-GGACUGC Zc3hc1 rno-miR-187 177 214 GCC-GACGUU--------------GUGUUCUGUGCU- || |||||: |||||||| || GGGACUGCAGGGCUAUGAACCAGCCACAAGACUUGAG Zc3hc1 rno-miR-200a 216 235 UGUAGCAAUGGUCUGUCACAAU |:| :|||:||||||| --UUUGGU-UCAGGCAGUGUUC Zc3hc1 rno-miR-200b 214 235 CAGUAGUAAUGGUCCGUCAUAAU :|: :||||||||:|| --GGUUUGGUUCAGGCAGUGUUC Zc3hc1 rno-miR-200c 199 235 -GGUAGUAAUGGG--------------CCGUCAUAAU ||| || ||:: ||||||:|| GCCA-CAAGACUUGAGGGUUUGGUUCAGGCAGUGUUC Zc3hc1 rno-miR-204 84 123 -UC-CGUAUCC------------UACUGU--UUCCCUU- || ||| ||| |||:|| :||||:| AAGCGCAAAGGCCUGCCAUCUGCAUGGCAAAGAGGGGAC Zc3hc1 rno-miR-211 84 123 -UC-CGUUUCC------------UACUGU--UUCCCUU- || ||||||| |||:|| :||||:| AAGCGCAAAGGCCUGCCAUCUGCAUGGCAAAGAGGGGAC Zc3hc1 rno-miR-216 123 142 GUGUCAACGGUCGACUCUAAU || |||||| ||:||| -CCAAUUGCCAUGUGGGAUG- Zc3hc1 rno-miR-218 71 93 UGUACCAAUCUA--GUUCGUGUU- |||||: |||||:||| --CUGGUUGAAUUGCAAGCGCAAA Zc3hc1 rno-miR-324-3p 195 233 -GGUCG-----------UCGUGGACC----CCGUCACC ||||| || : ||| ||||||| ACCAGCCACAAGACUUGAGGGUUUGGUUCAGGCAGUGU Zc3hc1 rno-miR-324-5p 120 145 -UGUGGUU-ACGGGAUC-CCCUACGC- || |||| |||| | ||||||:| GAC-CCAAUUGCCAU-GUGGGAUGUGG Zc3hc1 rno-miR-326 141 181 UGACCU---CC-UUC--------CCGGGUC-------UCC |||| || ||| ||||||| :|| -GUGGACAGGGUAAGAUACAGCAGGCCCAGUUCUGUCGGGA Zc3hc1 rno-miR-328 175 227 UGCCU-----UCCCG---------------UCU---CUCCCG GUC |||: ||||| ||| |||||: ||| UCGGGACUGCAGGGCUAUGAACCAGCCACAAGACUUGAGGGUUUGGUUCAGG Zc3hc1 rno-miR-331 146 181 AAGAUCCUA----------UCCGGGUC-------CCCG |||:| |||||||| ||| ---CAGGGUAAGAUACAGCAGGCCCAGUUCUGUCGGGA Zc3hc1 rno-miR-337 223 246 UUUCCGUAGUAUAUC-CUCG-ACUU- ||||| :|:| |||| |||: -CAGGCA--GUGUUCUGAGCGUGAGG Zc3hc1 rno-miR-338 40 60 AGUUGUUUUAGU-GACUACGACCU |||| :||| |||| |||| -AAACA--GUCAGCUGACGCUGC- Zc3hc1 rno-miR-339 116 152 ACUCGAGG-----------ACCU----CCUGUCCCU |:| || |||: |||||||| AGGGGACCCAAUUGCCAUGUGGGAUGUGGACAGGGU Zc3hc1 rno-miR-342 212 247 CUGCCCACGCUAA----------AGACA--CACUCU- |||| |:|| |||| |||||: --AGGGUUUGGUUCAGGCAGUGUUCUGAGCGUGAGGC Zc3hc1 rno-miR-343 101 122 -AGAC---CCGUGUGCCUCCCUCU |||| |||| |||||: AUCUGCAUGGCAAA--GAGGGGA- Zc3hc1 rno-miR-346 223 262 UCUCCGUC-CG------------UGAGUCCGU---CUGU- |||||| |: :|||||| |||| -CAGGCAGUGUUCUGAGCGUGAGGCUCAGGAGUGUGACAG Zc3hc1 rno-miR-349 173 192 UCUCCAAUUCUGUCGUCCCGAC || ::||| |||||||| ---UGUCGGGACUGCAGGGCUA Zc3hc1 rno-miR-34a 40 62 -UUGUUGGUCGAUUCUGUGACGGU ||||::||||| |||:||||: AAACAGUCAGCU--GACGCUGCUU Zc3hc1 rno-miR-34b 42 63 -GUUAGUCGAUUAAUGUGACGGAU ||:||||||: ||:||||:| ACAGUCAGCUG---ACGCUGCUUU Zc3hc1 rno-miR-34c 42 63 CGUUAGUCGAUUGAUGUGACGGA- ||:||||||: ||:||||:| ACAGUCAGCUG---ACGCUGCUUU Zc3hc1 rno-miR-351 108 141 GUCCGAGUUUCCCGAGG---------AGUCCCU- ||| |:|||| || | |||| -UGGCAAAGAGGGGACCCAAUUGCCAUGUGGGAU Zc3hc1 rno-miR-370 145 167 UUGGUCCAAGGUGGGGUCGUCCG- |||| |||||||| --ACAGGGUAAGAUACAGCAGGCC Zc3hc1 rno-miR-378 159 182 UGUGUCCUGGACCU--CAGUCCUC :|||| || | |||:||| -AGCAGGCCCAGUUCUGUCGGGAC Zc3hc1 rno-miR-412 136 156 UGCCGAUCACCUGGUCCACUUCA || |||||| :||| ||| -GGGAU-GUGGACAGGGU-AAGA Zc3hc1 rno-miR-429 212 235 UGCCGUAAU--GGUCUGUCAUAAU || ||: :|||:||||:|| -AGGGUUUGGUUCAGGCAGUGUUC Zc3hc1 rno-miR-431 159 191 ACGU----------ACUGCCG-GACGUUCUGU ||| || ||| |||||:|:| AGCAGGCCCAGUUCUGUCGGGACUGCAGGGCU Zc3hc1 rno-miR-449 45 62 UGGUCGAUUGUUAUGUGACGGU :|||||: ||:||||: GUCAGCUG-----ACGCUGCUU Zc3hc1 rno-miR-483 201 233 -UGUUCUGCCCUCCCC-------UCC-UCACU ||||||| ||||| ||| |||| CACAAGACUUGAGGGUUUGGUUCAGGCAGUGU Zc3hc1 rno-miR-485 76 106 -CUUAA-GUA-GUG---CCGGUCGG-AGA- ||||| || |:| |||| ||| ||| UGAAUUGCAAGCGCAAAGGCCUGCCAUCUG Zc3hc1 rno-miR-503 42 62 -GUCA--UGACAAGGGCGACGAU |||| :||| ||||||| ACAGUCAGCUGA---CGCUGCUU Zc3hc1 rno-miR-7* 243 271 AUACCG---UCUGACACU-----AAACAAC ||| :|| ||||| |||||| --AGGCUCAGGAGUGUGACAGUAUUUGUUA Zc3hc1 rno-miR-10a 122 152 GUGUUUAAG------CCUAGA--UGUCCCAU | ||| | | |||| | |||||||| CCCAATTGCCATGTGGGATGTGGACAGGGTA Zc3hc1 rno-miR-10a 165 190 GUGUUUA---AGCCUAGAUGUCCCau | ||: | ||||: ||:||||| CCCAGTTCTGTCGGGACTGCAGGGct Zc3hc1 rno-miR-10b 164 188 uGUGUUUA---AGCCAAGAUGUCCC | ||: | |||| ||:||||| gCCCAGTTCTGTCGGGACTGCAGGG Zc3hc1 rno-miR-125a 165 189 GUGUCCA-AUUUCCCAGA-GUCCCu | ||| | |: ||| || ||||| CCCAGTTCTGTCGGGACTGCAGGGc Zc3hc1 rno-miR-125b 200 228 aGUGUUC--AA-UCCCA----GAGUCCcu |||||| || ||||| :||||| cCACAAGACTTGAGGGTTTGGTTCAGGca Zc3hc1 rno-miR-133a 99 125 uGUCGACCAAC-----UUCCCCUGGuu || ||| || :|||||||| cCATCTGCATGGCAAAGAGGGGACCca Zc3hc1 rno-miR-133b 103 125 auCG-ACCAACU-UCCCCUGGuu || ||| | |||||||| ctGCATGGCAAAGAGGGGACCca Zc3hc1 rno-miR-141 211 234 gguagAAAU--GGUCUGUCACAAu |||: :|||:||||||| gagggTTTGGTTCAGGCAGTGTTc Zc3hc1 rno-miR-152 165 184 GGGUUCAAGACAGUACGUGACu ||| ||||||||| | |||| CCC-AGTTCTGTC-GGGACTGc Zc3hc1 rno-miR-187 186 212 gCCG--AC---GUU-GUGUUCUGUGCU ||| || ||: |||||||| :|| gGGCTATGAACCAGCCACAAGACTTGA Zc3hc1 rno-miR-200a 215 234 uguAGCAAUGGUCUGUCACAAu | ||| |||:||||||| gttTGGTT--CAGGCAGTGTTc Zc3hc1 rno-miR-200b 215 234 CAGUAGUAAUGGUCCGUCAUAAu ||: | :|| ||||||||:|| GTT-TGGTT--CAGGCAGTGTTc Zc3hc1 rno-miR-200c 213 234 gguaguaaugGGCCGUCAUAAu | ||||||:|| gggtttggttCAGGCAGTGTTc Zc3hc1 rno-miR-204 97 121 uCCGUA-UCCUACUG--UUUCCCUU | ||| | |||:| |:||||:| tGCCATCTGCATGGCAAAGAGGGGA Zc3hc1 rno-miR-20b* 161 187 GUCU---UCACGAGUG---UGACGUCa |||: ||| || | ||||||| CAGGCCCAGTTCTGTCGGGACTGCAGg Zc3hc1 rno-miR-211 85 121 UC-CGUUUCC------------UACUG--UUUCCCUU || ||||||| |||:| |:||||:| AGCGCAAAGGCCTGCCATCTGCATGGCAAAGAGGGGA Zc3hc1 rno-miR-216 122 142 GUGUCAACGGUCGACUCUAau | || |||||| ||:||| CCCAATTGCCATGTGGGATgt Zc3hc1 rno-miR-218 69 91 uguACCAAUCUA--GUUCGUGUU |||||: || |||||:||| ttcTGGTTGAATTGCAAGCGCAA Zc3hc1 rno-miR-324-3p 208 232 GGUCGUCGUGGACC----CCGUCACc |: | || :::||| ||||||| CTTG-AGGGTTTGGTTCAGGCAGTGt Zc3hc1 rno-miR-324-5p 121 143 UGUGGUU-ACGGGAUCCCCUACGC || |||| |||| |: ||||||:| AC-CCAATTGCCATGTGGGATGTG Zc3hc1 rno-miR-326 145 172 UGACC--UCCU---UC--CCGGGUCucc || || | || || ||||||| ACAGGGTAAGATACAGCAGGCCCAGttc Zc3hc1 rno-miR-331 132 152 aAGAUCCUAUCCGGGUCCCcg | |:||||: | ||||| aTGTGGGATGTGGACAGGGta Zc3hc1 rno-miR-337 222 244 uuUCCGUAGUAUAUCCUCG-ACUu ||||| ::| | |||| ||| tcAGGCAGTGT-TCTGAGCGTGAg Zc3hc1 rno-miR-338 37 60 agUUGUUUUAGU-GACUACGACcu || | |:||| |||| |||| gaAAAACAGTCAGCTGACGCTGct Zc3hc1 rno-miR-339 135 151 ACUCGAGGACCUCCUGUCCCu ||:| | | |||||||| TGGGAT----GTGGACAGGGt Zc3hc1 rno-miR-342 222 245 cugCCCACGCUAAAGA--CACACUCu || |:| |||| | ||||| tcaGGCAGTG--TTCTGAGCGTGAGg Zc3hc1 rno-miR-343 102 122 AGAC---CCGUGUGCCUCCCucu |||| |||| | ||||| TCTGCATGGCAAA--GAGGGgac Zc3hc1 rno-miR-346 212 232 UCUCCGUCCGUGAGUCCGUCugu ||:| : || :|||||||| AGGGTTTGG--TTCAGGCAGtgt Zc3hc1 rno-miR-349 170 191 ucucCAAUUCUGUCGUCCCGAc || ::||| |||||||| ttctGTCGGGACTGCAGGGCTa Zc3hc1 rno-miR-34a 41 61 UUGUUGGUCGAUUCUGUGACGgu ||||::||||| |||:|||| AACAGTCAGCT--GACGCTGCtt Zc3hc1 rno-miR-34b 43 62 GUUAGUCGAUUAAUGUGACGGAu ||:||||||: ||:||||:| CAGTCAGCTG---ACGCTGCTTt Zc3hc1 rno-miR-351 83 111 GUCCGAGUUUCCCGA----GGA-GUCCCu || || |||||| || :|| || || CAAGCGCAAAGGCCTGCCATCTGCATGGc Zc3hc1 rno-miR-370 143 165 uugGUCCAAGGUGGGGUCGUCCG |||| | : : |||||||| ggaCAGGGTAAGATACAGCAGGC Zc3hc1 rno-miR-370 164 189 uuGGUCCAAGGUGG---GGUCGUCCG- ||| ||||:::| | ||||| gcCCA-GTTCTGTCGGGACTGCAGGGC Zc3hc1 rno-miR-378 157 181 UGU-GUCCUGGAC--CUCAGUCCUc ||| |||| || | |||:||| ACAGCAGGCCCAGTTCTGTCGGGAc Zc3hc1 rno-miR-412 135 155 ugCCGAUCACCUGGUCCACUUCa || | |||||| :||| ||| tgGGAT-GTGGACAGGGT-AAGa Zc3hc1 rno-miR-429 211 234 ugCCGUAAU--GGUCUGUCAUAAu || ||: :|||:||||:|| gaGGGTTTGGTTCAGGCAGTGTTc Zc3hc1 rno-miR-431 169 190 acguACUG-CCGGACGUUCUGu || | || |||||:|:| gttcTGTCGGGACTGCAGGGCt Zc3hc1 rno-miR-449 41 61 UGGUCGAUUGUUAUGUGACGgu | |||: |:| : ||:|||| AACAGTCAGCTG-ACGCTGCtt Zc3hc1 rno-miR-483 232 256 uguuCU-GCCCUCC-CCUCCUCACu || || |||| ||||||| ttctGAGCGTGAGGCTCAGGAGTGt Zc3hc1 rno-miR-483 202 232 UGUUCUGCCCUCC----CC---UCC-UCACu ||||||| |||| || ||| |||| ACAAGACTTGAGGGTTTGGTTCAGGCAGTGt Zc3hc1 rno-miR-485 77 104 CUUAA-G-UAGUG---CCGGUCGG-AGA ||||| | | |:| |||| ||| ||| GAATTGCAAGCGCAAAGGCCTGCCATCT Zc3hc1 rno-miR-503 43 61 GUCAUGACAAGGGCGACGAu |||| | | | ||||||| CAGT-CAGCTGACGCTGCTt Zc3hc1 rno-miR-10a 145 152 GUGUUUA-------------------AGCCUAGA--UGUCCCAU :|||| | |||| |||||||| -GCAAAGAGGGGACCCAAUUGCCAUGUGGGAUGUGGACAGGGUAA Zc3hc1 rno-miR-141 227 234 GG---------------------UAGAAAUGGUCUGUCACAAU :|:| :|||:||||||| UGAACCAGCCACAAGACUUGAGGGUUUGGUUCAGGCAGUGUUC Zc3hc1 rno-miR-200a 227 234 UGU----------------------AGCAAUGGUCUGUCACAAU |:| :|||:||||||| UGAACCAGCCACAAGACUUGAGGGUUUGGU-UCAGGCAGUGUUC Zc3hc1 rno-miR-20b* 180 187 ----------------------GUCUUCACGAGUGUGACGUCA ||| ||: : ||||||| ACAGGGUAAGAUACAGCAGGCCCAGUUCUGUCGGGACUGCAGG Zc3hc1 rno-miR-324-3p 225 232 ------GGUCG-----------UCGUGGACC----CCGUCACC ||||| || : ||| ||||||| UAUGAACCAGCCACAAGACUUGAGGGUUUGGUUCAGGCAGUGU Zc3hc1 rno-miR-339 144 151 A--------CUCGAGG----------ACCU----CCUGUCCCU |:| || |||: |||||||| GGCAAAGAGGGGACCCAAUUGCCAUGUGGGAUGUGGACAGGGU Zc3hc1 rno-miR-349 184 191 UCUC---------------------CAAUUCUGUCGUCCCGAC || :||| |||||||| GGUAAGAUACAGCAGGCCCAGUUCUGUCGGGACUGCAGGGCUA Zc3hc1 rno-miR-370 158 165 UUG--------------------GUCCAAGGUGGGGUCGUCCG |||| |||||||| CCAAUUGCCAUGUGGGAUGUGGACAGGGUAAGAUACAGCAGGCC Zc3hc1 rno-miR-483 249 256 UG--------------------UUCUGCCCUCCCC-UCCUCACU :|| || |||| ||||||| GGUUUGGUUCAGGCAGUGUUCUGAG-CGUGAGGCUCAGGAGUGU Zc3hc1 rno-miR-503 54 61 ------------------------GUCA--UGACAAGGGCGACGAU |||| :||| ||||||| UGUUGAGGGCGACUUUUUGAAAAACAGUCAGCUGA---CGCUGCUU Zc3hc1 rno-miR-7* 263 270 AUA-------------CCG---UCUGACAC-----UAAACAAC ||| :|| |||| ||||||| AGUGUUCUGAGCGUGAGGCUCAGGAGUGUGACAGUAUUUGUUA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Zc3hc1 RAID00131977 rno-miR-3593-3p miRNA MIMAT0017897 Zc3hc1 mRNA 296957 Prediction 0.1828 Zc3hc1 RAID00141005 rno-miR-10a-5p miRNA MIMAT0000782 Zc3hc1 mRNA 296957 Prediction 0.1828 Zc3hc1 RAID00496166 rno-miR-3586-5p miRNA MIMAT0017880 Zc3hc1 mRNA 296957 Prediction 0.1828 Zc3hc1 RAID02036025 rno-miR-324-3p miRNA MIMAT0000554 Zc3hc1 mRNA 296957 Prediction 0.1828