DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004646 rno-miR-338* 313264 Trim32 guGAG-UCGUGGUCCUAUAACAa :|| ||:: | ||||||| ucUUCAAGUGAGUGCAUAUUGUu 2 21 972 994 [rn4:5:82391202-82391224:+] 0.5571 147 7 -10.01 -0.6077 MIMAT0004708 rno-miR-9* 313264 Trim32 ugAAAGC-CAAUAGAUCGAAAUa ||| | | | | ||||||| aaUUUAGAGCU-UAGAGCUUUAa 2 21 202 223 [rn4:5:82390432-82390453:+] 0.5571 145 7 -7.64 -0.4431 MIMAT0003152 rno-miR-22* 313264 Trim32 auuUCGAA-CGGUGACUUCUUGa | :|| ::|| ||||||| uccAUUUUCAUUACGGAAGAACa 2 20 922 944 [rn4:5:82391152-82391174:+] 0.5571 150 7 -11.48 -0.7307 MIMAT0004728 rno-miR-124* 313264 Trim32 uaguuCCAGGCGACACUUGUGc || : |: ||||||| uaguuGGAUAGUGUUGAACACu 2 18 678 699 [rn4:5:82390908-82390929:+] 0.5571 145 7 -10.92 -0.6516 MIMAT0000894 rno-miR-291a-5p 313264 Trim32 ucUC-UCCCGGAGGUGAAACUAc || | ||: ||: ||||||| guAGCAUGGUGUCUCCUUUGAUc 2 21 510 532 [rn4:5:82390740-82390762:+] 0.5571 159 7 -16.27 -0.1518 MIMAT0004743 rno-miR-300-5p 313264 Trim32 ugUUUCCUAUUGGAGAGAA-GUu | || |: |:|||||| || acAUAGAUUGUCUUCUCUUGCAg 2 21 627 649 [rn4:5:82390857-82390879:+] 0.5571 124 0 -16.28 -0.3339 MIMAT0003175 rno-miR-543* 313264 Trim32 ucuucaCGUGGCGCUUACAAa | :|: ||||||| uuuuuaGGGCUCAGAAUGUUu 2 16 812 832 [rn4:5:82391042-82391062:+] 0.5571 143 7 -11.90 -0.4987 MIMAT0003195 rno-miR-376b-5p 313264 Trim32 auugguaucuuccuUAUAGGUg ||||||| uaagccuugcuaacAUAUCCAg 2 9 777 798 [rn4:5:82391007-82391028:+] 0.5571 140 7 -10.94 -0.1791 MIMAT0003380 rno-miR-505 313264 Trim32 ccuUUGGUCGUUCACAACUg |::::| |||||||| ccuAGUUGGAUAGUGUUGAa 2 18 676 695 [rn4:5:82390906-82390925:+] 0.5571 153 7 -14.95 -0.9041 MIMAT0005282 rno-miR-872 313264 Trim32 ggacuugaUUGUUCAUU-GGAa ||||:|||| ||| cagaugggAACAGGUAAGCCUu 2 14 763 784 [rn4:5:82390993-82391014:+] 0.5571 125 0 -16.51 -0.1324 MIMAT0005332 rno-miR-708* 313264 Trim32 gaUCUUCG-AGUGUC-AGAUCAAc |||| : | : || ||||||| cuAGAAUUGUGGAAGCUCUAGUUu 2 21 121 144 [rn4:5:82390351-82390374:+] 0.5571 150 7 -18.02 -0.2784 MIMAT0005333 rno-miR-742 313264 Trim32 aaAUGGGUUGUACCACCGAAAg |:|:: |: | |||||||| ugUGCUUCAUCU-GUGGCUUUa 2 21 421 441 [rn4:5:82390651-82390671:+] 0.5571 154 7 -14.72 -0.4904 MIMAT0012834 rno-miR-592 313264 Trim32 ugUAGUAGCG-UAUAACUGUGUUa | ::|| | | : |||||||| uaAGUGUCACUAAGGUGACACAAa 2 22 560 583 [rn4:5:82390790-82390813:+] 0.5571 152 7 -13.54 -0.5885 MIMAT0012849 rno-miR-295 313264 Trim32 cuucacacgggguguAAACUCa |||||| ugcauauuguuugacUUUGAGa 2 8 984 1005 [rn4:5:82391214-82391235:+] 0.5571 120 6 -11.73 -0.1146 MIMAT0012850 rno-miR-465 313264 Trim32 guGUGGUCGUG-GCAAGAUUUAu | || | | | |||||||| uuCCCCUUCUCUCCUUCUAAAUu 2 21 183 205 [rn4:5:82390413-82390435:+] 0.5571 151 7 -11.48 -0.6536 MIMAT0012852 rno-miR-667 313264 Trim32 gaacccGACCCACCGU-CCACAGu || || ||| |||||| uuauauCUCUGUAGCAUGGUGUCu 2 18 500 523 [rn4:5:82390730-82390753:+] 0.5571 125 6 -17.02 -0.2527 MIMAT0000573 rno-miR-140 313264 Trim32 gauggUAUCCCAUUUUGGUGAc :||| | |:||||||| cuuuaGUAGAG-AGAACCACUu 2 18 295 315 [rn4:5:82390525-82390545:+] 0.5571 155 7 -14.95 -0.3136 MIMAT0004650 rno-miR-340-5p 313264 Trim32 uuAGUCAG---AGUAACGAAAU-AUu |||| | ||| |||||| || agUCAGGCACUUCAAGGCUUUAGUAg 2 21 278 303 [rn4:5:82390508-82390533:+] 0.5571 123 0 -17.24 -0.2326 MIMAT0000589 rno-miR-342-3p 313264 Trim32 ugcccacgcuAAA--GACACACUCu ||| | ||||||| uuugaucaccUUUACCAGUGUGAGa 2 14 526 550 [rn4:5:82390756-82390780:+] 0.5571 144 7 -13.94 -0.8222 MIMAT0000781 rno-miR-9 313264 Trim32 aguauGUCGAUCUAUUG-GUUUCu || : ||:|:|| ||||| aguguCACUAAGGUGACACAAAGu 2 19 562 585 [rn4:5:82390792-82390815:+] 0.5571 126 0 -15.84 -0.1200 MIMAT0000784 rno-miR-15b 313264 Trim32 acAUUUGGUACUACACG-ACGAu |: |:: || ||||| |||| gcUGCAUUCUG-UGUGCAUGCUc 2 21 448 469 [rn4:5:82390678-82390699:+] 0.5571 122 0 -13.35 -0.3920 MIMAT0000785 rno-miR-16 313264 Trim32 gcgguuaUAA-AUGCACG-ACGAu ||| |::|||| |||| uggcugcAUUCUGUGUGCAUGCUc 2 16 446 469 [rn4:5:82390676-82390699:+] 0.5571 122 0 -14.23 -0.3920 MIMAT0000834 rno-miR-128 313264 Trim32 uuUCUCUGGCCAAGU-GACACu | || :| |||| ||||| uuACAGUGUGCUUCAUCUGUGg 2 20 415 436 [rn4:5:82390645-82390666:+] 0.5571 123 0 -14.25 -0.3064 MIMAT0000849 rno-miR-143 313264 Trim32 acUCGA-UGUCACGAAGUA-GAGu :||| | | ||:||||| ||| agGGCUCAGAAUGUUUCAUACUCc 2 21 817 840 [rn4:5:82391047-82391070:+] 0.5571 131 0 -22.21 -0.9117 MIMAT0000862 rno-miR-185 313264 Trim32 aguccuuGACGGAAAGAGAGGu :| || |||||||| cacccccUUCCCCUUCUCUCCu 2 16 176 197 [rn4:5:82390406-82390427:+] 0.5571 155 7 -15.77 -0.6663 MIMAT0000865 rno-miR-190 313264 Trim32 uggauuauauaGUUUGUAUAGu | |||||||| gguaagccuugCUAACAUAUCc 2 12 775 796 [rn4:5:82391005-82391026:+] 0.5571 147 7 -10.65 -0.1928 MIMAT0000869 rno-miR-194 313264 Trim32 agguguaccucAACGACAAUGu || ||||||| cuacuguccucUUCCUGUUACa 2 12 398 419 [rn4:5:82390628-82390649:+] 0.5571 147 7 -12.94 -0.5342 MIMAT0000870 rno-miR-195 313264 Trim32 cgguuaUAA-AGACACG-ACGAu ||| | ||||| |||| ggcugcAUUCUGUGUGCAUGCUc 2 16 447 469 [rn4:5:82390677-82390699:+] 0.5571 122 0 -13.58 -0.3920 MIMAT0000878 rno-miR-205 313264 Trim32 gucuGAGGCCACCUUACUUCcu :|:| || |||||| uuucUUUCUGUUCUAUGAAGca 3 19 1006 1027 [rn4:5:82391236-82391257:+] 0.5571 130 0 -9.72 -0.1810 MIMAT0000879 rno-miR-206 313264 Trim32 gguguguGAAGGAAUGUA-AGGu ||| || |||| ||| gguaagcCUUGCUAACAUAUCCa 2 16 775 797 [rn4:5:82391005-82391027:+] 0.5571 123 0 -14.25 -0.5452 MIMAT0000886 rno-miR-216a 313264 Trim32 agugucAACGGUCGACUCUAAu ||| | :||||||| uauuguUUGAC-UUUGAGAUUu 2 17 988 1008 [rn4:5:82391218-82391238:+] 0.5571 146 7 -10.65 -0.9295 MIMAT0001543 rno-miR-449a 313264 Trim32 uggUC-GAUUGUUAUGUG-ACGGu || |||: ||| ||| |||| uugAGUCUAGAAAU-CACUUGCCu 2 20 699 721 [rn4:5:82390929-82390951:+] 0.5571 124 0 -14.35 -0.8175 MIMAT0003193 rno-miR-494 313264 Trim32 uccaaagggcaCAUACAAAGu | ||||||| uuuagggcucaGAAUGUUUCa 2 11 814 834 [rn4:5:82391044-82391064:+] 0.5571 142 7 -15.34 -0.9816 MIMAT0003196 rno-miR-376b-3p 313264 Trim32 uucaccuacaAGGAGAUACUa | :||||||| gauuucuuucUGUUCUAUGAa 2 12 1004 1024 [rn4:5:82391234-82391254:+] 0.5571 143 7 -8.88 -1.0847 MIMAT0003208 rno-miR-374 313264 Trim32 gugaaucGUCCAACAUAAUAUa || || ||||||| aacccguCA-GUGAUAUUAUAu 2 16 485 505 [rn4:5:82390715-82390735:+] 0.5571 145 7 -8.15 -0.4201 MIMAT0003383 rno-miR-497 313264 Trim32 auguuugguGUCACACG-ACGAc | |||||| |||| ggcugcauuCUGUGUGCAUGCUc 2 14 447 469 [rn4:5:82390677-82390699:+] 0.5571 121 0 -16.30 -0.4012 MIMAT0005302 rno-miR-190b 313264 Trim32 uuggauuauaGUUUGUAUAGu | |||||||| guaagccuugCUAACAUAUCc 2 12 776 796 [rn4:5:82391006-82391026:+] 0.5571 147 7 -13.35 -0.1946 MIMAT0005312 rno-miR-411 313264 Trim32 gcaugcgauaugcCAGAUGAu ||||||| ucugaggucccuaGUCUACUg 2 9 383 403 [rn4:5:82390613-82390633:+] 0.5571 140 7 -13.67 -0.2476

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G060536 Trim32 Rattus norvegicus 313264

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim32 RAID00111654 rno-miR-128-3p miRNA MIMAT0000834 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID00655199 rno-miR-449a-5p miRNA MIMAT0001543 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID00661558 rno-miR-26a-3p miRNA MIMAT0017100 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID00894173 rno-miR-3589 miRNA MIMAT0017888 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID00907750 rno-miR-374-5p miRNA MIMAT0003208 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID00911917 rno-miR-143-3p miRNA MIMAT0000849 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID00951149 rno-miR-342-3p miRNA MIMAT0000589 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID00996393 rno-miR-195-5p miRNA MIMAT0000870 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID01192784 rno-miR-742-3p miRNA MIMAT0005333 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID01491115 rno-miR-340-5p miRNA MIMAT0004650 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID01517026 rno-miR-9a-3p miRNA MIMAT0004708 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID01537528 rno-miR-16-5p miRNA MIMAT0000785 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID01571543 rno-miR-497-5p miRNA MIMAT0003383 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID01822757 rno-miR-494-3p miRNA MIMAT0003193 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID01861153 rno-miR-194-5p miRNA MIMAT0000869 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID02003984 rno-miR-140-5p miRNA MIMAT0000573 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID02068409 rno-miR-205 miRNA MIMAT0000878 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID02069679 rno-miR-9a-5p miRNA MIMAT0000781 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID02310211 rno-miR-190a-5p miRNA MIMAT0000865 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID02515725 rno-miR-376b-3p miRNA MIMAT0003196 Trim32 mRNA 313264 Prediction 0.2202 Trim32 RAID02524338 rno-miR-216a-5p miRNA MIMAT0000886 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID02547510 rno-miR-365-5p miRNA MIMAT0017184 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID03045161 rno-miR-206-3p miRNA MIMAT0000879 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID03252088 rno-miR-411-5p miRNA MIMAT0005312 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID03715398 rno-miR-15b-5p miRNA MIMAT0000784 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID03762073 rno-miR-155-5p miRNA MIMAT0030409 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID04011233 rno-miR-190b-5p miRNA MIMAT0005302 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID04027637 rno-miR-181b-1-3p miRNA MIMAT0017139 Trim32 mRNA 313264 Prediction 0.1828 Trim32 RAID04063902 rno-miR-185-5p miRNA MIMAT0000862 Trim32 mRNA 313264 Prediction 0.2202