DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004655 rno-miR-345-3p 25562 Tceb3 agaGGUCUGGGGA----UCAA-GUCCc :| |||:||| |||| |||| gccUCUGACUCCUGCACAGUUCCAGGu 2 20 111 137 [rn4:5:154784816-154784842:-] 0.5714 122 0 -24.67 -0.1505 MIMAT0000607 rno-miR-7a* 25562 Tceb3 uaccgucugacacuAAACAACa ||||||| agaucaguuauacuUUUGUUGc 2 9 229 250 [rn4:5:154784703-154784724:-] 0.5714 140 7 -10.34 -1.0141 MIMAT0004708 rno-miR-9* 25562 Tceb3 ugaaagccaauagAUCGAAAUa |||:|||| aaacuauaagacaUAGUUUUAa 2 10 267 288 [rn4:5:154784665-154784686:-] 0.5714 129 0 -5.89 -0.1258 MIMAT0000783 rno-miR-10b 25562 Tceb3 uguGUUUAAGCCAAGAUGUCCc :::| | | ||||||| gucUGGAAGCAGGACUACAGGg 2 20 24 45 [rn4:5:154784908-154784929:-] 0.5714 143 7 -23.06 -0.4936 MIMAT0000831 rno-miR-126* 25562 Tceb3 gcgcaugguuUUCAUUAUUac || |||||| acauaguuuuAAUUAAUAAau 3 12 277 297 [rn4:5:154784656-154784676:-] 0.5714 127 0 -3.20 -0.1224 MIMAT0004736 rno-miR-193* 25562 Tceb3 aguagaACGGGCGU-UUCUGGGu ||:|| || ||||||| agaggaUGUCCACAGAAGACCCg 2 17 63 85 [rn4:5:154784868-154784890:-] 0.5714 159 7 -23.25 -0.3757 MIMAT0000893 rno-miR-290 25562 Tceb3 uuuuucacggggGUAUCAAACUc |||||||| | uaaacuauaagaCAUAGUUUUAa 2 12 266 288 [rn4:5:154784665-154784687:-] 0.5714 123 0 -8.11 -0.1466 MIMAT0000901 rno-miR-299 25562 Tceb3 uacauacacccugcCAUUUGGu ||||||: uaauuagcaucuuuGUAAACUa 2 9 251 272 [rn4:5:154784681-154784702:-] 0.5714 124 0 -7.10 -0.2105 MIMAT0003115 rno-miR-207 25562 Tceb3 uuCCCUCCU--CUCGGUCCUCUUCg |||| | |:| |:||||||| caGGGACUAUGGGGACGGGAGAAGa 2 22 41 65 [rn4:5:154784888-154784912:-] 0.5714 160 7 -29.50 -0.3947 MIMAT0012827 rno-miR-1224 25562 Tceb3 gagguGGAGGGGUCA-GGAGUg || ||:| || ||||| gguguCCCCCUCUGUGCCUCAg 2 17 135 156 [rn4:5:154784797-154784818:-] 0.5714 124 0 -20.55 -0.1604 MIMAT0012846 rno-miR-201 25562 Tceb3 uucuuguuaCGGAAUGACUCa |:||||||||| ugagccucaGUCUUACUGAGg 2 13 202 222 [rn4:5:154784731-154784751:-] 0.5714 156 7 -19.98 -0.2465 MIMAT0012852 rno-miR-667 25562 Tceb3 gaaccCGACCCACCGUCCACAGu || || |||||||| cuccuGCACAGUUCCAGGUGUCc 2 19 119 141 [rn4:5:154784812-154784834:-] 0.5714 150 7 -16.46 -0.2013 MIMAT0012859 rno-miR-711 25562 Tceb3 gaAUGUAGAGAGGGUCC-CAGGg |:|| | |:||||| |||| ccUGCA-CAGUUCCAGGUGUCCc 2 21 121 142 [rn4:5:154784811-154784832:-] 0.5714 126 0 -24.92 -0.2905 MIMAT0000560 rno-miR-326 25562 Tceb3 ugaccuccuucccGGGUCUcc |||||| aauaaauauugccCCCAGAug 3 9 291 311 [rn4:5:154784642-154784662:-] 0.5714 120 0 -11.87 -0.1940 MIMAT0004641 rno-miR-330 25562 Tceb3 cggAUUCUGUGUC-CGGGUCUcu ||| |:|: | |||||| uaaUAA-AUAUUGCCCCCAGAug 3 20 290 311 [rn4:5:154784642-154784663:-] 0.5714 128 0 -13.95 -0.1921 MIMAT0004650 rno-miR-340-5p 25562 Tceb3 uuagucagaguaacgAAAUAUu |||||| uugcccccagauguaUUUAUAa 2 8 299 320 [rn4:5:154784633-154784654:-] 0.5714 120 6 -5.15 -0.2134 MIMAT0000602 rno-miR-20a 25562 Tceb3 gauGGAC-GUGA-UAUUCGU-GAAAu ::|| ::|| || |||| |||| acuUUUGUUGCUAAUUAGCAUCUUUg 2 21 240 265 [rn4:5:154784688-154784713:-] 0.5714 122 0 -13.12 -1.0900 MIMAT0003125 rno-miR-1 25562 Tceb3 uaugugUGAAGAAAUGU-AAGGu ||| || ||| |||| ccucugACUCCUGCACAGUUCCa 2 17 112 134 [rn4:5:154784819-154784841:-] 0.5714 120 0 -12.75 -0.2735 MIMAT0003211 rno-miR-20b-5p 25562 Tceb3 ugGACGUGAUACUCGU-GAAAc :||| : || |||| |||| ugUUGC-UAAUUAGCAUCUUUg 2 20 245 265 [rn4:5:154784688-154784708:-] 0.5714 121 0 -14.28 -1.0900 MIMAT0003379 rno-miR-378 25562 Tceb3 ggaAGACUGAG---GU-UC-AGGUCa |||||||| || || ||||| gccUCUGACUCCUGCACAGUUCCAGg 2 19 111 136 [rn4:5:154784817-154784842:-] 0.5714 128 0 -28.23 -0.2374 MIMAT0003381 rno-miR-499 25562 Tceb3 uuUGUAGUGACGUUCAGAAUu ::|| | : ||||||| caGUAUGAGCCUCAGUCUUAc 2 20 197 217 [rn4:5:154784736-154784756:-] 0.5714 143 7 -8.18 -0.4321 MIMAT0003381 rno-miR-499 25562 Tceb3 uuUGUAGUGACGU-UCAGAAUu || :| || |||:||| aaACUAUAAGACAUAGUUUUAa 2 20 267 288 [rn4:5:154784665-154784686:-] 0.5714 126 0 -8.79 -0.1104 MIMAT0005311 rno-miR-410 25562 Tceb3 uguccgguagacaCAAUAUaa |||||| gacuuuaagaucaGUUAUAcu 3 9 222 242 [rn4:5:154784711-154784731:-] 0.5714 120 0 -5.03 -0.1034

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G014386 Tceb3 Rattus norvegicus 25562

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Tceb3 RAID00141660 rno-miR-741-3p miRNA MIMAT0017902 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID00396188 rno-miR-7a-1-3p miRNA MIMAT0000607 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID00686896 rno-miR-499-5p miRNA MIMAT0003381 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID00730282 rno-miR-1188-3p miRNA MIMAT0017855 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID00894722 rno-miR-378a-3p miRNA MIMAT0003379 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID01081102 rno-miR-20a-5p miRNA MIMAT0000602 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID01143410 rno-miR-1-3p miRNA MIMAT0003125 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID01875069 rno-miR-410-3p miRNA MIMAT0005311 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID02007937 rno-miR-328a-5p miRNA MIMAT0017029 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID02436464 rno-miR-20b-5p miRNA MIMAT0003211 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID02537615 rno-miR-326-3p miRNA MIMAT0000560 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID02701458 rno-miR-195-3p miRNA MIMAT0017149 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID02794464 rno-miR-3065-5p miRNA MIMAT0017839 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID02812592 rno-miR-330-5p miRNA MIMAT0004641 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID03596943 rno-miR-340-5p miRNA MIMAT0004650 Tceb3 mRNA 25562 Prediction 0.1828 Tceb3 RAID03993441 rno-miR-1247-5p miRNA MIMAT0035721 Tceb3 mRNA 25562 Prediction 0.1828