DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004639 rno-miR-325-3p 363017 Taf1d aacuauccuccacgaGUUAUUu |||||| auaaaaauuuauugaCAAUAAa 2 8 310 331 [rn4:8:12117107-12117128:+] 0.5062 120 6 -5.42 -0.3321 MIMAT0004645 rno-miR-148b-5p 363017 Taf1d ggacucacAUAUUG--UCUUGAAg | |::| ||||||| acaaaucuUCUGGCUAAGAACUUa 2 15 152 175 [rn4:8:12116216-12116227,12116514-12116525:+] 0.4086 141 7 -10.56 -0.8195 MIMAT0000599 rno-miR-349 363017 Taf1d ucuccaauucugucgUCCCGAc |||||| aaagacagauaaaagAGGGCUa 2 8 198 219 [rn4:8:12116548-12116564,12116808-12116812:+] 0.3979 120 6 -18.32 -0.1073 MIMAT0000601 rno-miR-129* 363017 Taf1d uacgaaaAACCCCAUUCCCGAa ||| || ||||||| gaugcccUUGAGGAAAGGGCUa 2 16 239 260 [rn4:8:12116832-12116848,12117053-12117057:+] 0.4140 159 7 -19.82 -0.5540 MIMAT0000601 rno-miR-129* 363017 Taf1d uacgaaaaaccccaUUCCCGAa :|||||| aaagacagauaaaaGAGGGCUa 2 9 198 219 [rn4:8:12116548-12116564,12116808-12116812:+] 0.3979 124 6 -10.36 -0.1105 MIMAT0003152 rno-miR-22* 363017 Taf1d auuucgaacggugacUUCUUGa |||||| uuuuauacauuaaaaAAGAACc 2 8 335 356 [rn4:8:12117132-12117153:+] 0.5062 120 6 -7.34 -0.1919 MIMAT0004712 rno-miR-23a* 363017 Taf1d uuuaggguaggggucCUUGGGg |||||| uuauacauuaaaaaaGAACCCu 2 8 337 358 [rn4:8:12117134-12117155:+] 0.5062 120 6 -13.04 -0.2589 MIMAT0000831 rno-miR-126* 363017 Taf1d gcgcAUGGUU-UUCAUUAUUAc ||:::| || |||||| aauuUAUUGACAAUAAAUAAUu 2 18 315 336 [rn4:8:12117112-12117133:+] 0.5062 124 6 -2.14 -0.1940 MIMAT0003380 rno-miR-505 363017 Taf1d ccuuuggucguUCACAACUg |||||||| auguuuguuucAGUGUUGAa 2 10 18 37 [rn4:8:12113391-12113407,12114786-12114788:+] 0.5007 145 7 -10.79 -1.0974 MIMAT0005288 rno-miR-880 363017 Taf1d agaugagucuUACUUACCU-CAu ||||||||| || -aagaugcccAUGAAUGGAUGUu 2 13 1 22 [rn4:8:12113374-12113395:+] 0.5123 124 0 -13.46 -0.5456 MIMAT0005308 rno-miR-380 363017 Taf1d gcguacaagauaccaGUUGGUa |||||| gcaaagaaaucaaacCAACCAc 2 8 284 305 [rn4:8:12117081-12117102:+] 0.4318 120 6 -6.91 -0.1783 MIMAT0012832 rno-miR-568 363017 Taf1d cacacaUAUGUAAAUAUGUa ||| |||||||| caauaaAUAAUUUUAUACAu 2 15 325 344 [rn4:8:12117122-12117141:+] 0.5062 154 7 -7.66 -1.2644 MIMAT0012843 rno-miR-876 363017 Taf1d acCACUAAGUGUCUCUUUAGGu || | |:: | |||||||| aaGUAAAUUG-A-AGAAAUCCa 2 21 133 152 [rn4:8:12116197-12116216:+] 0.4253 148 7 -12.11 -1.1173 MIMAT0012859 rno-miR-711 363017 Taf1d gaauguagagagggUCCCAGGg ||||||| aagcuaauugaagaAGGGUCCc 2 9 104 125 [rn4:8:12116168-12116189:+] 0.4454 140 7 -18.90 -0.8673 MIMAT0000573 rno-miR-140 363017 Taf1d gaugguaucccauuUUGGUGAc ||||||| aaagaaaucaaaccAACCACUu 2 9 286 307 [rn4:8:12117083-12117104:+] 0.4318 140 7 -11.87 -0.8623 MIMAT0004650 rno-miR-340-5p 363017 Taf1d uuagucagagUAACGAAAUAUu || :|||||| uugacaauaaAUAAUUUUAUAc 2 13 321 342 [rn4:8:12117118-12117139:+] 0.5062 128 6 -2.07 -0.2779 MIMAT0000818 rno-miR-96 363017 Taf1d ucGUUUUUACACGAUC-ACGGUUu :||:|| | || |||||| gcUAAGAACUUAGAAGUUGCCAAu 2 22 164 187 [rn4:8:12116514-12116537:+] 0.3918 121 6 -12.54 -0.1713 MIMAT0000838 rno-miR-132 363017 Taf1d gcugguACCGACAUCUGACAAu || | | ||||||| agaaguUGCCAAU-GACUGUUg 2 17 175 195 [rn4:8:12116525-12116545:+] 0.4111 142 7 -13.51 -0.5409 MIMAT0000846 rno-miR-141 363017 Taf1d ggUAGAAAUGGUCUGUCACAAu || |||::: ||||||| ggAUGUUUGUU--UCAGUGUUg 2 21 16 35 [rn4:8:12113389-12113407,12114786-12114786:+] 0.5007 149 7 -14.76 -0.4884 MIMAT0000851 rno-miR-145 363017 Taf1d ucccuaaggacCCUUUUGACCUg | | ||||||| aaaaauaaaaaGCACAACUGGAu 2 13 219 241 [rn4:8:12116812-12116834:+] 0.4477 144 7 -11.90 -0.2993 MIMAT0000874 rno-miR-200a 363017 Taf1d ugUAGCAAUGGUC--UGUCACAAu || | |::: | ||||||| gaAUGGAUGUUUGUUUCAGUGUUg 2 21 12 35 [rn4:8:12113385-12113407,12114786-12114786:+] 0.5007 143 7 -13.86 -0.4884 MIMAT0000877 rno-miR-204 363017 Taf1d uccGUAUCCUACUGU-UUCCCUu ::| ||: | || |||||| agaUGUUGGGCGUCACAAGGGAa 2 20 59 81 [rn4:8:12114810-12114817,12115867-12115881:+] 0.4886 123 6 -16.83 -0.5175 MIMAT0000883 rno-miR-212 363017 Taf1d accggCACUGACCUCUGACAAu || :| ||||||| uagaaGUUGCCAAUGACUGUUg 2 18 174 195 [rn4:8:12116524-12116545:+] 0.4111 141 7 -12.51 -0.5687 MIMAT0000888 rno-miR-218 363017 Taf1d uguaccaaUCUAGUUCGUGUu | | ||||||| ggcuaaaaAUAAAAAGCACAa 2 14 215 235 [rn4:8:12116808-12116828:+] 0.4066 141 7 -10.05 -1.1114 MIMAT0000889 rno-miR-219-5p 363017 Taf1d ucUUAACGCAAACCUGUUAgu |||| | | |||||| aaAAUU---UAUUGACAAUaa 3 20 313 330 [rn4:8:12117110-12117127:+] 0.5062 127 0 -5.00 -0.5167 MIMAT0004742 rno-miR-296 363017 Taf1d ccucucggaggugggUUGGGAg |||||| uauacauuaaaaaagAACCCUu 2 8 338 359 [rn4:8:12117135-12117156:+] 0.5062 120 6 -12.41 -0.2222 MIMAT0005300 rno-miR-182 363017 Taf1d gccacaCUCAAGAUGGUAACGGUUu || |: : :||||||| ggcuaaGAACUUAGAAGUUGCCAAu 2 20 163 187 [rn4:8:12116227-12116227,12116514-12116537:+] 0.4086 143 7 -13.71 -0.1933 MIMAT0005320 rno-miR-495 363017 Taf1d uucuucACGUG-GUACAAACAAa || |: ||||||||| ugcccaUGAAUGGAUGUUUGUUu 2 17 5 27 [rn4:8:12113378-12113400:+] 0.5123 151 7 -12.93 -0.2437

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101307 Taf1d Rattus norvegicus 363017

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Taf1d RAID00003913 rno-miR-182 miRNA MIMAT0005300 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID00337819 rno-miR-96-5p miRNA MIMAT0000818 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID00699728 rno-miR-568 miRNA MIMAT0012832 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID00736933 rno-miR-219a-5p miRNA MIMAT0000889 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID00855494 rno-miR-141-3p miRNA MIMAT0000846 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID01278169 rno-miR-148b-5p miRNA MIMAT0004645 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID01559858 rno-miR-140-5p miRNA MIMAT0000573 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID01576468 rno-miR-200a-3p miRNA MIMAT0000874 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID01594952 rno-miR-204-5p miRNA MIMAT0000877 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID01808366 rno-miR-148a-5p miRNA MIMAT0035724 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID01814662 rno-miR-340-5p miRNA MIMAT0004650 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID02232763 rno-miR-132-3p miRNA MIMAT0000838 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID02355526 rno-miR-296-3p miRNA MIMAT0004742 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID02814240 rno-miR-495 miRNA MIMAT0005320 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID03231434 rno-miR-218a-5p miRNA MIMAT0000888 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID03481086 rno-miR-212-3p miRNA MIMAT0000883 Taf1d mRNA 363017 Prediction 0.1828 Taf1d RAID03497913 rno-miR-145-5p miRNA MIMAT0000851 Taf1d mRNA 363017 Prediction 0.1828