DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G054839 Rnf7 Rattus norvegicus 300948

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Rnf7; Rnf7_predicted; rCG_25724 rno-miR-1 64 83 AUGUGUGAAGAAAUGUAAGGU- ||| |||| ||| |||| GACAGACUUG---ACACUCCAG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-1* 81 117 -CCCAUG----------UAUUUCU----UCAUACACG ||| |: |||:||: :||:|||| AGGG-AUUCACCUUCAGAUAGAGGGAAUGGUGUGUGG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-10a 64 86 GUGUUUAAGCCUAGAUGUCCCAU |||:| |:| || ||||| GACAGACUUGACACUCCAGGGA- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-10b 64 86 UGUGUUUAAGCCAAGAUGUCCC- |||:| |:| || ||||| -GACAGACUUGACACUCCAGGGA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-122a 40 83 -UGUUU-----GUGGUAACAG--------------UGUGAGGU |||| ||||| ||| |||||||| GACAACCUUGUCACCAA-GUCACUGGACAGACUUGACACUCCAG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-125a 79 127 GUGUCCA-------------AUUUCCCA------------GAGUCCCU |||| ||:|||| ||| |||| -CCAGGGAUUCACCUUCAGAUAGAGGGAAUGGUGUGUGGCCUCUGGGAC Rnf7; Rnf7_predicted; rCG_25724 rno-miR-125b 49 87 -AGU-GUUCAAUC-CC-------------AGAGUCCCU- ||| ||||| || || |||||| GUCACCAAGUCACUGGACAGACUUGACACUC-CAGGGAU Rnf7; Rnf7_predicted; rCG_25724 rno-miR-126 6 29 -CGUAAUAAUGAGU--GCCAUGCU- ||| :||| :|||:||: GGCAGAG--GCUCUCCUGGUGCGGU Rnf7; Rnf7_predicted; rCG_25724 rno-miR-133a 6 38 -UGUC--------GACCAACUU-CCC-CUGGUU :||| ||||| ||| |||| GGCAGAGGCUCUCCUGGUGCGGUGGGUGACCC- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-133b 18 38 AUCGACCAACUU-CCC-CUGGUU ||||| ||| |||| --CCUGGUGCGGUGGGUGACCC- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-134 34 55 GGGAGACCAGUUGGU-CAGUGU || |||| ||||| ||||| ACC-CUGGACAACCUUGUCACC Rnf7; Rnf7_predicted; rCG_25724 rno-miR-136 89 114 AGGUAGUA-GUUUUGUUUACCUCA- || ||| :|:|: :||||| || ACCUUCAGAUAGAGGGAAUGGUGUG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-140* 21 41 ACAGGCA--CCAAGAUGGGACACCAU || || ||| |||||| GGUGCGGUGGGUG--ACCCUGG---- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-150 18 43 GUGACCAUGUU-CCCAAC----CCUCU |||||:|:: |||| ||| -CCUGGUGCGGUGGGUGACCCUGGAC- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-154 24 49 -GCU-UCCGUUGU-GCCUAUUGGAU ||: :||::|| :||| ||||| GCGGUGGGUGACCCUGGACAACCUU Rnf7; Rnf7_predicted; rCG_25724 rno-miR-187 114 143 GCCG---ACGUUGU----GUUCUGUGCU- ||| || :|| ||||:||:|: UGGCCUCUGGGACUCAUCCAAGGCAUGGU Rnf7; Rnf7_predicted; rCG_25724 rno-miR-199a 103 126 -CUUGUCCAUCAGACUUGUGACCC- |||: ||| || ||: | ||||| GGAAU-GGU-GUGUGGCCUCUGGGA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-204 81 108 UCCGUAUCCUA---------CUGUUUCCCUU- :|||| ||:|:|||||| -----AGGGAUUCACCUUCAGAUAGAGGGAAU Rnf7; Rnf7_predicted; rCG_25724 rno-miR-206 69 90 -GGUGUGUGAAGGAAUGUAAGGU |: ||||| || : |||| ACUUGACACU-CCAGGGAUUCA- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-207 1 16 UUCCCUCCUCUCGGUCCUCUUCG- |||||:| |||:|| ---------GAGCCGGCAGAGGCU Rnf7; Rnf7_predicted; rCG_25724 rno-miR-211 62 108 UCC-GU-------------UUCCUA---------CUGUUUCCCUU || || |:|||| ||:|:|||||| UGGACAGACUUGACACUCCAGGGAUUCACCUUCAGAUAGAGGGAAU Rnf7; Rnf7_predicted; rCG_25724 rno-miR-217 3 31 UAGGUCAGUCA-----AGGACUACGUCAU- ||:| ||| |||||:|||:||: -GCCGG-CAGAGGCUCUCCUGGUGCGGUGG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-25 5 31 AGUCUGGCUCUGU-----UCACGUUAC- |:| |||:| :||||::|| --CGGCAGAGGCUCUCCUGGUGCGGUGG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-26a 44 76 CGGA---------UAG-GACCUAA-UGAACUU ||| :|| ||||| |||||| ACCUUGUCACCAAGUCACUGGACAGACUUGAC Rnf7; Rnf7_predicted; rCG_25724 rno-miR-296 81 121 UGUCCUAA------------CUCCC---CC-----CCGGGA :||||| ||||| || ||||: -AGGGAUUCACCUUCAGAUAGAGGGAAUGGUGUGUGGCCUC Rnf7; Rnf7_predicted; rCG_25724 rno-miR-29a 1 27 -UUGGCUAAAGUCU--------ACCACGAU |:||| |||| |||||| GAGCCGG---CAGAGGCUCUCCUGGUGCG- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-324-3p 3 32 -GGUCGUCGU-----GGACCCCGUCACC- ||:|||| ||||| ||:|||| GCCGGCAGAGGCUCUCCUGGUGCGGUGGG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-326 59 105 -UGACCUC-CU-----------UCCCG----GG-------UCUCC |||||| || |||| || ||||| CACUGGACAGACUUGACACUCCAGGGAUUCACCUUCAGAUAGAGGG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-329 20 35 UUUUUCCAAUCGACCCACACAA ||| | |||||| ----UGGUGCGGUGGGUGA--- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-343 18 36 AGACCCGUGUGCCUCCCUCU- |||| :||| ||| || CCUGGU---GCGGUGGGUGAC Rnf7; Rnf7_predicted; rCG_25724 rno-miR-349 1 17 UCUCCAAUUCUGUCGUC-CCGAC :|| |:|||| |||| -------GAGCCGGCAGAGGCUC Rnf7; Rnf7_predicted; rCG_25724 rno-miR-351 81 127 GUCC-GAGU----------UUCCCGA----------GGAGUCCCU :|| :||| :|||| |||| |||| AGGGAUUCACCUUCAGAUAGAGGGAAUGGUGUGUGGCCUCUGGGAC Rnf7; Rnf7_predicted; rCG_25724 rno-miR-383 78 100 UCGGUGUC--AGUGGAAGACUAGA ||| :| |||||||| ||| -UCCAGGGAUUCACCUUCAGAUA- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-409-5p 7 38 -GUUUCA---------ACGA-GCCCAUUGGA ||:|| ||| :||||:||| GCAGAGGCUCUCCUGGUGCGGUGGGUGACCC Rnf7; Rnf7_predicted; rCG_25724 rno-miR-412 11 36 UGCCGAUC--ACCUGG---UCCACUUCA |||| ||| | :||||| -AGGCUCUCCUGGUGCGGUGGGUGAC-- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-485 82 123 -CUUAAGU---AGU-----------GCCG---GUCGGAGA |:||||| ||| :||: ::|||||| GGGAUUCACCUUCAGAUAGAGGGAAUGGUGUGUGGCCUCUG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-487b 25 44 -UCACCUACUGGGACAUGCUAA :||||:|||||||| || CGGUGGGUGACCCUGGACA--- Rnf7; Rnf7_predicted; rCG_25724 rno-miR-1* 93 116 cccaUGUAUUUCUU--CAUACACg |:| |::||| ||:|||| tcagATAGAGGGAATGGTGTGTGg Rnf7; Rnf7_predicted; rCG_25724 rno-miR-10a 64 86 gUGUUUAAGCCUAGAUGUCCCau |||:| |:| || ||||| gACAGACTTGACACTCCAGGGat Rnf7; Rnf7_predicted; rCG_25724 rno-miR-10b 63 84 ugUGUUUAAGCCAAGAUGUCCC |||:| |:| || ||||| ggACAGACTTGACACTCCAGGG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-122a 65 81 UGUUUGUGGUAACAGUGUGAGGU |||:|| ||| |||||||| ACAGAC----TTG--ACACTCCA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-125a 103 125 gugUCCAAUUUCCCAGAGUCCCU | | |: : || ||| |||| ggaATGGTGTGTGGCCTCTGGGA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-125a 59 85 GUGUCCAAUUU---CCCAGA-GUCCCU ||| || |:| | || |||||| CACTGGACAGACTTGACACTCCAGGGA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-125b 58 85 AGUGUUCAAUCCCA-----GA-GUCCCU |||| :| || | || |||||| TCACTGGACAGACTTGACACTCCAGGGA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-126 7 27 CGUAAUAAUGAGUGCCAUGCu ||| : ||| :|||:|| GCAGAGGCTCTCCTGGTGCGg Rnf7; Rnf7_predicted; rCG_25724 rno-miR-133a 15 38 ugucGACCA-ACUUCCC-CUGGuu ||||| |: ||| |||| tctcCTGGTGCGGTGGGTGACCct Rnf7; Rnf7_predicted; rCG_25724 rno-miR-133b 16 38 aucGACCA-ACUUCCC-CUGGuu ||||| |: ||| |||| ctcCTGGTGCGGTGGGTGACCct Rnf7; Rnf7_predicted; rCG_25724 rno-miR-134 35 62 GGGA-------GACCAGUUGGUCAGUGu |||| || |||| | |||||| CCCTGGACAACCTTGTCACCAAGTCACt Rnf7; Rnf7_predicted; rCG_25724 rno-miR-140* 5 32 aCAGGCACCAAGAUGG----GACACCau | | | || ||| |: | |||| cGGCAGAGGCTCTCCTGGTGCGGTGGgt Rnf7; Rnf7_predicted; rCG_25724 rno-miR-150 17 34 guGACCAUGUUCCCAACCCUCU |||||:| || |||| || tcCTGGTGC--GG--TGGGTGA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-154 25 48 GCU-UCCGUUGUG-CCUAUUGGAu ||: :||::|| | ||| ||||| CGGTGGGTGACCCTGGACAACCTt Rnf7; Rnf7_predicted; rCG_25724 rno-miR-187 122 141 gCC-GACGUUGUGUUCUGUGCu || || || | ||||:||:| gGGACT-CATC-CAAGGCATGg Rnf7; Rnf7_predicted; rCG_25724 rno-miR-199a 104 124 CUUGUCCAUCAGACUUGUGACCC |||: ||| || ||: | ||||| GAAT-GGT-GTGTGGCCTCTGGG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-204 85 106 uccguauccuaCUGUUUCCCUU ||:|:|||||| attcaccttcaGATAGAGGGAA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-206 53 81 GGU---GUG---UGAAGGAA-UGUAAGGU ||| ||| || ||| ||| |||| CCAAGTCACTGGACAGACTTGACACTCCA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-211 76 106 uccGUUUCCUA---------CUGUUUCCCUU | |:|||| ||:|:|||||| actCCAGGGATTCACCTTCAGATAGAGGGAA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-217 2 29 UAGGUCAGUC----A-AGGACUACGUCAu | ||:| ||| | |||||:|||:|| AGCCGG-CAGAGGCTCTCCTGGTGCGGTg Rnf7; Rnf7_predicted; rCG_25724 rno-miR-25 3 29 aGUCUGGCUCU-----GUUCACGUUAC | |:| |||: | :||||::|| gCCGGCAGAGGCTCTCCTGGTGCGGTG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-26a 52 75 cGGAU-AG-GACCU-AAUGAACUu || | || ||||| |||||| aCCAAGTCACTGGACAGACTTGAc Rnf7; Rnf7_predicted; rCG_25724 rno-miR-296 100 120 uguCCUAACUCCCCCCCGGga ||| ||: | | |||| gagGGAATGGTGTGTGGCCtc Rnf7; Rnf7_predicted; rCG_25724 rno-miR-29a 2 27 UUGGCUAAAGUCU--------ACCACGau |:|||: |||| |||||| AGCCGG---CAGAGGCTCTCCTGGTGCgg Rnf7; Rnf7_predicted; rCG_25724 rno-miR-324-3p 4 30 GGUCGUC-----GUGGACCCCGUCACC ||:|||| | ||||| ||:|||| CCGGCAGAGGCTCTCCTGGTGCGGTGG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-326 60 85 UGACCU-CCUUCCC----GGGUCUCc |||||| || | :||||:| ACTGGACAGACTTGACACTCCAGGGa Rnf7; Rnf7_predicted; rCG_25724 rno-miR-329 97 115 UUUUUCCAAUCGACCCACACAa | |:||| | ||||||| ATAGAGG---GAATGGTGTGTg Rnf7; Rnf7_predicted; rCG_25724 rno-miR-329 7 33 uuUUUCCAA----UCGAC-CCACACAa |:||| | | || |||| || gcAGAGGCTCTCCTGGTGCGGTGGGTg Rnf7; Rnf7_predicted; rCG_25724 rno-miR-351 100 125 gUCCGAGUUUCC-CG-A--GGAGUCCCU ||| || || |: | |||| |||| gAGG--GAATGGTGTGTGGCCTCTGGGA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-351 66 85 GUCCGAGUUUCCCGAGGA-GUCCCU ||| ||::| | || |||||| CAGACTTGA----C-ACTCCAGGGA Rnf7; Rnf7_predicted; rCG_25724 rno-miR-383 77 100 ucGGUGUC--AGUGGAAGACUAga ||| :| |||||||| ||| ctCCAGGGATTCACCTTCAGATag Rnf7; Rnf7_predicted; rCG_25724 rno-miR-409-5p 17 37 guuuCAACG-AGCCCAUUGGa | ||| :||||:||| tcctGGTGCGGTGGGTGACCc Rnf7; Rnf7_predicted; rCG_25724 rno-miR-412 4 28 uGCCGAUCACC---UGGUCCACUUCA |||| || || || |||| :|| cCGGC-AGAGGCTCTCCTGGTGCGGT Rnf7; Rnf7_predicted; rCG_25724 rno-miR-485 100 121 CUUAAGUAGUGCCGGUCGGAGA ||: || ::| ::|||||| GAGGGAATGGTGTGTGGCCTCT Rnf7; Rnf7_predicted; rCG_25724 rno-miR-487b 9 29 UCACCUACUGGGACAUGCUAa || || | ||: ||:||:| AGAGGCTCTCCTGGTGCGGTg Rnf7; Rnf7_predicted; rCG_25724 rno-miR-122a 74 81 UGUUUGU-GGUAACAG----------------------UGUGAGGU ::||| || ||||| |||||||| --GGACAACC-UUGUCACCAAGUCACUGGACAGACUUGACACUCCAG Rnf7; Rnf7_predicted; rCG_25724 rno-miR-329 108 115 UU------------------------UUUCCAAUCGACCCACACAA |:||| ||||||| GACACUCCAGGGAUUCACCUUCAGAUAGAGGGAAU---GGUGUGUG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf7 RAID00597862 rno-miR-543-3p miRNA MIMAT0003175 Rnf7 mRNA 300948 Prediction 0.1828 Rnf7 RAID00924012 rno-miR-3576 miRNA MIMAT0017862 Rnf7 mRNA 300948 Prediction 0.1828 Rnf7 RAID01149415 rno-miR-98-5p miRNA MIMAT0000819 Rnf7 mRNA 300948 Prediction 0.2202 Rnf7 RAID01672944 rno-let-7e-5p miRNA MIMAT0000777 Rnf7 mRNA 300948 Prediction 0.2202 Rnf7 RAID01842155 rno-let-7a-5p miRNA MIMAT0000774 Rnf7 mRNA 300948 Prediction 0.2202 Rnf7 RAID01996774 rno-let-7f-5p miRNA MIMAT0000778 Rnf7 mRNA 300948 Prediction 0.2202 Rnf7 RAID02130371 rno-let-7b-5p miRNA MIMAT0000775 Rnf7 mRNA 300948 Prediction 0.2202 Rnf7 RAID02166193 rno-miR-362-3p miRNA MIMAT0017357 Rnf7 mRNA 300948 Prediction 0.1828 Rnf7 RAID02477770 rno-let-7d-5p miRNA MIMAT0000562 Rnf7 mRNA 300948 Prediction 0.2202 Rnf7 RAID02482761 rno-let-7c-5p miRNA MIMAT0000776 Rnf7 mRNA 300948 Prediction 0.2202 Rnf7 RAID03500861 rno-miR-3590-3p miRNA MIMAT0017890 Rnf7 mRNA 300948 Prediction 0.1828 Rnf7 RAID03538792 rno-miR-3568 miRNA MIMAT0017848 Rnf7 mRNA 300948 Prediction 0.1828 Rnf7 RAID03723572 rno-miR-329-3p miRNA MIMAT0000566 Rnf7 mRNA 300948 Prediction 0.1828 Rnf7 RAID03788937 rno-miR-22-5p miRNA MIMAT0003152 Rnf7 mRNA 300948 Prediction 0.1828 Rnf7 RAID03848085 rno-let-7g-5p miRNA MIMAT0035719 Rnf7 mRNA 300948 Prediction 0.1828 Rnf7 RAID04048321 rno-let-7i-5p miRNA MIMAT0000779 Rnf7 mRNA 300948 Prediction 0.2202