DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004738 rno-miR-199a-3p 295448 Ints12 auUGGUUAC-ACGUCUG-AUGACa || || | ||:| || ||||| ggACAAAAGAUGUA-ACAUACUGu 2 21 56 78 [rn4:2:230626959-230626981:+] 0.5345 121 0 -11.27 -1.1808 MIMAT0000899 rno-miR-297 295448 Ints12 guacgUAUGUACGUGUGUAUGua | | |||:| |||||| ggacaAAAGAUGUA-ACAUACug 3 19 56 77 [rn4:2:230626959-230626980:+] 0.5345 136 0 -10.33 -0.1432 MIMAT0003195 rno-miR-376b-5p 295448 Ints12 auugguaucuuccuUAUAGGug |||||| gcagauagguuuuuAUAUCCua 3 9 6 27 [rn4:2:230626909-230626930:+] 0.5345 120 0 -10.83 -0.1342 MIMAT0005282 rno-miR-872 295448 Ints12 ggaCUUGAUUGU-U--CAUUGGAa || ||||| | |||||:| aaaGAUGUAACAUACUGUAACUUa 2 19 61 84 [rn4:2:230626964-230626987:+] 0.5345 136 0 -10.90 -0.1658 MIMAT0012845 rno-miR-935 295448 Ints12 cgcCAUCGCCUUCGCCAUUGAcc ||| | | | |||||| gauGUAAC--AUACUGUAACUua 3 21 64 84 [rn4:2:230626967-230626987:+] 0.5345 125 0 -5.32 -0.3792 MIMAT0000575 rno-miR-335 295448 Ints12 uguaaaaagcaauaacGAGAACu |||||| cuguaacuuaauaaaaCUCUUGa 2 8 75 97 [rn4:2:230626978-230627000:+] 0.5430 120 6 -11.05 -0.2735 MIMAT0000615 rno-miR-101b 295448 Ints12 aagUCGAUAGUGUCAUGACAu || |:| || |||||| aaaAGAUGUAAC-AUACUGUa 2 19 60 79 [rn4:2:230626963-230626982:+] 0.5345 124 6 -12.84 -0.1717 MIMAT0000823 rno-miR-101a 295448 Ints12 aagUCAAUAGUGUCAUGACAu || |:| || |||||| aaaAGAUGUAAC-AUACUGUa 2 19 60 79 [rn4:2:230626963-230626982:+] 0.5345 124 6 -12.84 -0.1717 MIMAT0000845 rno-miR-139-5p 295448 Ints12 gaccucugugcacGUGACAUcu :|||||| aaaagauguaacaUACUGUAac 3 10 60 81 [rn4:2:230626963-230626984:+] 0.5345 121 0 -8.86 -0.1524 MIMAT0000850 rno-miR-144 295448 Ints12 ucaUGUA-GUAGAUAUGACAu | || :| | ||||||| aaaAGAUGUAAC-AUACUGUa 2 18 60 79 [rn4:2:230626963-230626982:+] 0.5345 142 7 -9.48 -1.1375 MIMAT0003119 rno-miR-224 295448 Ints12 auUUGCCUUG-GUGAUCACUGAAc :|:| ||| :||| || |||| aaGAUGUAACAUACU-GUAACUUa 2 22 62 84 [rn4:2:230626965-230626987:+] 0.5345 130 0 -12.52 -0.1309

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099925 Ints12 Rattus norvegicus 295448

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ints12 rno-miR-144 52 81 -GAUCAUGUAG--UAGAU---AUGACAU- ||:| ||| || || ||||||| ACUGGGACAAAAGAUGUAACAUACUGUAA Ints12 rno-miR-501 48 68 AAAGUGGGUCCCUGUUUCCUAA ||:||: |||||||| ||| CUUUACU--GGGACAAAAGAUG Ints12 rno-miR-144 72 79 ----------------GAUCAUGUA----GUAGA-UAUGACAU ||:| ||| ::| |||||||| AAAAUUAAAAUCUUUACUGGGACAAAAGAUGUAACAUACUGUAA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ints12 RAID00330991 rno-miR-139-5p miRNA MIMAT0000845 Ints12 mRNA 295448 Prediction 0.1828 Ints12 RAID01655144 rno-miR-101a-3p miRNA MIMAT0000823 Ints12 mRNA 295448 Prediction 0.1828 Ints12 RAID03217863 rno-miR-335 miRNA MIMAT0000575 Ints12 mRNA 295448 Prediction 0.1828 Ints12 RAID03556488 rno-miR-101b-3p miRNA MIMAT0000615 Ints12 mRNA 295448 Prediction 0.1828 Ints12 RAID03743643 rno-miR-224-5p miRNA MIMAT0003119 Ints12 mRNA 295448 Prediction 0.1828 Ints12 RAID03745614 rno-miR-144-3p miRNA MIMAT0000850 Ints12 mRNA 295448 Prediction 0.1828