DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004714 rno-miR-26b* 297337 Rnf181 cucGGUUCAUUACCUCUUGUCc || : | | ||||||| cucCCUGAUUCUCCAGAACAGa 2 20 812 833 [rn4:4:105664653-105664674:-] 0.5932 143 7 -10.53 -0.5511 MIMAT0004739 rno-miR-204* 297337 Rnf181 uugcAGGGAAACGGAAGGGUCg | ||| | ||||||||| cuucUGCCUCUACCUUCCCAGu 2 19 644 665 [rn4:4:105664821-105664842:-] 0.4859 166 7 -23.49 -0.1734 MIMAT0004741 rno-miR-219-1-3p 297337 Rnf181 gccCUGCAGGUCUGCGUUGAGa || ||| | ||||||| uuuGAGUUCCUG--GCAACUCu 2 20 735 754 [rn4:4:105664732-105664751:-] 0.5932 148 7 -15.32 -0.2993 MIMAT0004787 rno-miR-543 297337 Rnf181 cgcuuUUUGUGCGCCCGUUGAa :|:: | | ||||||| acuuuGAGUUC-CUGGCAACUc 2 18 733 753 [rn4:4:105664733-105664753:-] 0.5932 143 7 -12.52 -0.4394 MIMAT0003209 rno-miR-363* 297337 Rnf181 uuuaacGUAGCACUAGGUGGGc | || | ||||||| aaaggaCUUCUU--UCCACCCc 2 17 774 793 [rn4:4:105664693-105664712:-] 0.5932 141 7 -12.56 -0.3176 MIMAT0005280 rno-miR-743b 297337 Rnf181 agauAAGUCAUAC-CAC-AGAAAg || :|| || ||| ||||| gggcUUGGGUCUGAGUGUUCUUUu 2 19 247 270 [rn4:4:105665216-105665239:-] 0.5470 125 0 -11.38 -0.4176 MIMAT0005282 rno-miR-872 297337 Rnf181 ggaCUUGAUUGUUC-AUUGGAa ||| | | || |||||| ccgGAAAUCUCUAGUUAACCUu 2 19 345 366 [rn4:4:105665120-105665141:-] 0.5011 122 6 -12.11 -0.2658 MIMAT0005328 rno-miR-673 297337 Rnf181 gagguuccuggccucGACACUc |||||| cugagagcucagccuCUGUGAu 2 8 15 36 [rn4:4:105665450-105665471:-] 0.6031 120 6 -16.80 -0.1017 MIMAT0005332 rno-miR-708* 297337 Rnf181 gaucuucgagugucAGAUCAAc ||||||| cccuuccggaaaucUCUAGUUa 2 9 340 361 [rn4:4:105665125-105665146:-] 0.5011 140 7 -9.51 -0.5915 MIMAT0012829 rno-miR-511 297337 Rnf181 acucacgucucGUUUUCCGUa ||||||||| gucaaagguguCAAAAGGCAg 2 11 156 176 [rn4:4:105665310-105665330:-] 0.5470 150 7 -15.34 -0.1610 MIMAT0012851 rno-miR-547 297337 Rnf181 gagUGAAUUUCUUCAUGGUu |: |||| ||||||:| uagAUAUAAAAAAGUACUA- 2 18 864 882 [rn4:4:105664604-105664622:-] 0.5932 149 0 -8.70 -0.2600 MIMAT0012852 rno-miR-667 297337 Rnf181 gaacccgaccCACCGUCCACAGu || ||||||| ccagaaagauGUCAAAGGUGUCa 2 14 146 168 [rn4:4:105665318-105665340:-] 0.5470 141 7 -13.99 -0.8100 MIMAT0012853 rno-miR-761 297337 Rnf181 acacagucaAAGUGGGACGACg | || ||||||| uccgaauccUCCAACCUGCUGc 2 14 121 142 [rn4:4:105665344-105665365:-] 0.5470 149 7 -17.47 -0.3970 MIMAT0001619 rno-miR-322 297337 Rnf181 agGUUUUGUA-CUU-AACGACGAc |:|| | | || ||||||| ucCGAAUCCUCCAACCUGCUGCUa 2 21 121 144 [rn4:4:105665342-105665365:-] 0.5470 146 7 -14.67 -0.5546 MIMAT0000552 rno-miR-301a 297337 Rnf181 cgAAACUGU--UAUGAUAACGUGAc | |||:| | | ||||||| ucUGUGAUAUCUUCCCUUUGCACUu 2 22 29 53 [rn4:4:105665433-105665457:-] 0.5470 148 7 -14.37 -0.8522 MIMAT0000575 rno-miR-335 297337 Rnf181 uguaAAAAGCAAUAACGAGA-ACu || || :||||||| || aacaUUGUCAAAGUUGCUCUCUGu 2 20 427 450 [rn4:4:105665036-105665059:-] 0.5011 123 0 -14.82 -0.3461 MIMAT0000579 rno-miR-148b-3p 297337 Rnf181 uguuucaaGAC-ACUACGUGACu ||| | ||||||| uaaccaccCUGCAGCUGCACUGc 2 15 77 99 [rn4:4:105665387-105665409:-] 0.5470 145 7 -13.20 -0.1034 MIMAT0000602 rno-miR-20a 297337 Rnf181 gaUGGACGUGAUAUUCGUGAAAu |:|| | || | ||||||| auAUCUUCCCUUU--GCACUUUg 2 22 35 55 [rn4:4:105665431-105665451:-] 0.5470 154 7 -15.31 -0.8853 MIMAT0000602 rno-miR-20a 297337 Rnf181 gaUGGACGUGAUAU----UCGUGAAAu | |||::: | | :||||||| caAACUGUGUCAGAUCCUGGCACUUUg 2 22 277 303 [rn4:4:105665183-105665209:-] 0.5470 144 7 -15.07 -0.2408 MIMAT0000784 rno-miR-15b 297337 Rnf181 acaUUUGGUA--CUACACGACGAu :||:| | | ||||||| uccGAAUCCUCCAACCUGCUGCUa 2 20 121 144 [rn4:4:105665342-105665365:-] 0.5470 142 7 -14.51 -0.5510 MIMAT0000785 rno-miR-16 297337 Rnf181 gcgguuauaaaUGCACGACGAu || ||||||| cgaauccuccaACCUGCUGCUa 2 12 123 144 [rn4:4:105665342-105665363:-] 0.5470 147 7 -15.04 -0.5546 MIMAT0000786 rno-miR-17-5p 297337 Rnf181 gaUGGACGUGACAUUCGUGAAAc |:|| | || | ||||||| auAUCUUCCCUUU--GCACUUUg 2 22 35 55 [rn4:4:105665431-105665451:-] 0.5470 154 7 -16.72 -0.8853 MIMAT0000786 rno-miR-17-5p 297337 Rnf181 gauggacgugacauUCGUGAAAc :||||||| cugugucagauccuGGCACUUUg 2 10 281 303 [rn4:4:105665183-105665205:-] 0.5470 141 7 -15.64 -0.2386 MIMAT0000788 rno-miR-19b 297337 Rnf181 agucaaaacguaccuAAACGUGu ||||||| cugugauaucuucccUUUGCACu 2 9 30 52 [rn4:4:105665434-105665456:-] 0.5470 140 7 -6.79 -0.5611 MIMAT0000789 rno-miR-19a 297337 Rnf181 agucaaaacguaucuAAACGUGu ||||||| cugugauaucuucccUUUGCACu 2 9 30 52 [rn4:4:105665434-105665456:-] 0.5470 140 7 -6.79 -0.5611 MIMAT0000798 rno-miR-27b 297337 Rnf181 cgUCUUGAAUCGGUGACACUu |||:|| |||| |||||| ugAGAGCUCAGCCUCUGUGAu 2 20 16 36 [rn4:4:105665450-105665470:-] 0.6031 151 6 -25.05 -0.1007 MIMAT0000799 rno-miR-27a 297337 Rnf181 cgcCUUGAAUCGGUGACACUu ||:|| |||| |||||| ugaGAGCUCAGCCUCUGUGAu 2 19 16 36 [rn4:4:105665450-105665470:-] 0.6031 146 6 -24.10 -0.1007 MIMAT0000817 rno-miR-93 297337 Rnf181 gaUGG-ACGUGCUUG--UCGUGAAAc ||: ||: || | :||||||| aaACUGUGUCAGAUCCUGGCACUUUg 2 22 278 303 [rn4:4:105665183-105665208:-] 0.5470 147 7 -17.65 -0.2408 MIMAT0000817 rno-miR-93 297337 Rnf181 gaUGGACGUGCUUGUCGUGAAAc |:|| | | : ||||||| auAUCUUCCC--UUUGCACUUUg 2 22 35 55 [rn4:4:105665431-105665451:-] 0.5470 142 7 -15.17 -0.9179 MIMAT0000825 rno-miR-106b 297337 Rnf181 uaGACGUGACAGUCGUGAAAu || | || | ||||||| auCUUCCCUUU--GCACUUUg 2 20 37 55 [rn4:4:105665431-105665449:-] 0.5470 148 7 -12.42 -0.8853 MIMAT0000825 rno-miR-106b 297337 Rnf181 uaGACGU-GAC-AG--UCGUGAAAu |||:: | | || :||||||| aaCUGUGUCAGAUCCUGGCACUUUg 2 20 279 303 [rn4:4:105665183-105665207:-] 0.5470 144 7 -16.65 -0.2386 MIMAT0000828 rno-miR-124 297337 Rnf181 ccguAAGUGGCGCAC-GGAAu |||||: :||| |||| ggguUUCACUAUGUGACCUUg 2 17 574 594 [rn4:4:105664892-105664912:-] 0.4859 128 0 -22.92 -0.1052 MIMAT0000834 rno-miR-128 297337 Rnf181 uuucucUGGCCAAGUGACACu ||| | ||||||| guauguACCAG--CACUGUGc 2 16 679 697 [rn4:4:105664789-105664807:-] 0.5395 144 7 -14.12 -0.1708 MIMAT0000836 rno-miR-130a 297337 Rnf181 uacgggAAAAUUGUAACGUGAc | || | ||||||| gugauaUCUUCCCUUUGCACUu 2 17 32 53 [rn4:4:105665433-105665454:-] 0.5470 148 7 -13.09 -0.8416 MIMAT0000837 rno-miR-130b 297337 Rnf181 uacgGGAAAGUAGUAACGUGAc :||| | | ||||||| gauaUCUUCC--CUUUGCACUu 2 19 34 53 [rn4:4:105665433-105665452:-] 0.5470 147 7 -13.09 -0.8381 MIMAT0000844 rno-miR-138 297337 Rnf181 gccgGACUAAGUGUU--GUGGUCGa | | | ||| : ||||||| ccugCAGCUGCACUGCUCACCAGCu 2 20 84 108 [rn4:4:105665378-105665402:-] 0.5470 146 7 -22.93 -0.1939 MIMAT0000853 rno-miR-150 297337 Rnf181 gugaCCAUGUUCC-CAAC-CCUCu || |||||| ||| |||| aaggGGGACAAGGCCUUGUGGAGg 2 19 540 563 [rn4:4:105664923-105664946:-] 0.4785 129 0 -22.18 -0.2851 MIMAT0000854 rno-miR-152 297337 Rnf181 gguucaaGACAGU--ACGUGACu ||| || ||||||| aaccaccCUG-CAGCUGCACUGc 2 15 78 99 [rn4:4:105665387-105665408:-] 0.5470 143 7 -17.09 -0.1034 MIMAT0000863 rno-miR-186 297337 Rnf181 ucggguUUUCCUCUUAAGAAAc ||| |||||||||| acaugcAAAUUAGAAUUCUUUu 2 17 840 861 [rn4:4:105664625-105664646:-] 0.5932 164 7 -12.96 -1.1931 MIMAT0000870 rno-miR-195 297337 Rnf181 cgguuauaaagacACGACGAu ||||||| gaauccuccaaccUGCUGCUa 2 9 124 144 [rn4:4:105665342-105665362:-] 0.5470 140 7 -13.74 -0.5546 MIMAT0000885 rno-miR-214 297337 Rnf181 gacggacagacacGGACGACa ||||||| ccgaauccuccaaCCUGCUGc 2 9 122 142 [rn4:4:105665344-105665364:-] 0.5470 140 7 -14.92 -0.3939 MIMAT0000892 rno-miR-223 297337 Rnf181 ccCCAUAAACUGUUUGACUGu | ||||| | |||||||: uaGCUAUUU-A-AAACUGAUa 2 20 304 322 [rn4:4:105665164-105665182:-] 0.5470 143 0 -11.89 -0.1416 MIMAT0004742 rno-miR-296 297337 Rnf181 ccucUCG-GAGGUGGGU-UGGGAg ||| || ::|:|| ||||| uaccAGCACUGUGCUCAGACCCUu 2 19 684 707 [rn4:4:105664779-105664802:-] 0.5395 125 0 -19.63 -0.7185 MIMAT0003114 rno-miR-383 297337 Rnf181 ucGGUGUCAGUGGAAGAC-UAGa :|| |||::|: |||| ||| ugUCAAAGUUGCUCUCUGUAUCc 2 21 432 454 [rn4:4:105665032-105665054:-] 0.5011 132 0 -17.76 -0.1350 MIMAT0003117 rno-miR-361 297337 Rnf181 cauggggaccucuaaGACUAUu |||||| uguagcuauuuaaaaCUGAUAa 2 8 302 323 [rn4:4:105665163-105665184:-] 0.5470 120 6 -10.22 -0.1611 MIMAT0003179 rno-miR-542-3p 297337 Rnf181 aaagucaauaguUAGACAGUGu ||||||||| uauuugaauggcAUCUGUCACu 2 11 714 735 [rn4:4:105664751-105664772:-] 0.5932 150 7 -14.09 -0.9878 MIMAT0003199 rno-miR-381 297337 Rnf181 cucUCGAACGGGA-ACAUAu || ||||:|| ||||| caaAG-UUGCUCUCUGUAUc 2 17 435 453 [rn4:4:105665033-105665051:-] 0.5011 126 0 -13.01 -0.1457 MIMAT0003203 rno-miR-485 297337 Rnf181 cuuaaguagugCCGGUCGGAGa | :||||||| uagggcugagaGCUCAGCCUCu 2 12 10 31 [rn4:4:105665455-105665476:-] 0.6031 143 7 -18.31 -1.0071 MIMAT0003211 rno-miR-20b-5p 297337 Rnf181 ugGACGUGAUACUCGUGAAAc || | || | ||||||| auCUUCCCUUU--GCACUUUg 2 20 37 55 [rn4:4:105665431-105665449:-] 0.5470 148 7 -14.96 -0.8853 MIMAT0003211 rno-miR-20b-5p 297337 Rnf181 uggacgugauacUCGUGAAAc :||||||| gugucagauccuGGCACUUUg 2 10 283 303 [rn4:4:105665183-105665203:-] 0.5470 141 7 -15.64 -0.2408 MIMAT0003381 rno-miR-499 297337 Rnf181 uuuGUAGUGACGUUCAGA-AUu | || |||| ||||| || uucCCUCUCUGCCAGUCUCUAg 2 19 194 215 [rn4:4:105665271-105665292:-] 0.5470 130 0 -13.59 -0.1565 MIMAT0003383 rno-miR-497 297337 Rnf181 auGUUU--GGUGUCACACGACGAc |:|| |: || ||||||| ucCGAAUCCUCCAACCUGCUGCUa 2 21 121 144 [rn4:4:105665342-105665365:-] 0.5470 147 7 -15.24 -0.5510 MIMAT0005304 rno-miR-301b 297337 Rnf181 cgAAACUGU--UAUGGUAACGUGAc | |||:| | || ||||||| ucUGUGAUAUCUUCCCUUUGCACUu 2 22 29 53 [rn4:4:105665433-105665457:-] 0.5470 156 7 -16.74 -0.8522 MIMAT0005339 rno-miR-873 297337 Rnf181 uccucUGAGUGUUCAAGGACg |||: ::|||||||| cugucACUU-UGAGUUCCUGg 2 17 728 747 [rn4:4:105664739-105664758:-] 0.5932 154 7 -17.01 -0.5781

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G100905 Rnf181 Rattus norvegicus 297337

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf181 RAID00050403 rno-miR-148b-3p miRNA MIMAT0000579 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID00133592 rno-miR-152-3p miRNA MIMAT0000854 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID00199116 rno-miR-128-3p miRNA MIMAT0000834 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID00212903 rno-miR-223-3p miRNA MIMAT0000892 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID00219470 rno-miR-130b-3p miRNA MIMAT0000837 Rnf181 mRNA 297337 Prediction 0.2202 Rnf181 RAID00306160 rno-miR-873-5p miRNA MIMAT0005339 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID00513856 rno-miR-20a-5p miRNA MIMAT0000602 Rnf181 mRNA 297337 Prediction 0.2202 Rnf181 RAID00577199 rno-miR-17-5p miRNA MIMAT0000786 Rnf181 mRNA 297337 Prediction 0.2202 Rnf181 RAID00580748 rno-miR-383-5p miRNA MIMAT0003114 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID00830090 rno-miR-106b-5p miRNA MIMAT0000825 Rnf181 mRNA 297337 Prediction 0.2202 Rnf181 RAID00930109 rno-miR-542-3p miRNA MIMAT0003179 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01033544 rno-miR-19a-3p miRNA MIMAT0000789 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01082266 rno-miR-195-5p miRNA MIMAT0000870 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01140194 rno-miR-19b-3p miRNA MIMAT0000788 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01189492 rno-miR-361-5p miRNA MIMAT0003117 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01243990 rno-miR-130a-3p miRNA MIMAT0000836 Rnf181 mRNA 297337 Prediction 0.2202 Rnf181 RAID01322656 rno-miR-124-3p miRNA MIMAT0000828 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01419974 rno-miR-381-3p miRNA MIMAT0003199 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01631504 rno-miR-16-5p miRNA MIMAT0000785 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01673563 rno-miR-497-5p miRNA MIMAT0003383 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01735821 rno-miR-93-5p miRNA MIMAT0000817 Rnf181 mRNA 297337 Prediction 0.2202 Rnf181 RAID01753406 rno-miR-3558-3p miRNA MIMAT0017826 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01812500 rno-miR-138-5p miRNA MIMAT0000844 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01837046 rno-miR-296-3p miRNA MIMAT0004742 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01846658 rno-miR-499-5p miRNA MIMAT0003381 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID01883769 rno-miR-485-5p miRNA MIMAT0003203 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID02071171 rno-miR-370-5p miRNA MIMAT0017202 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID02187485 rno-miR-27a-3p miRNA MIMAT0000799 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID02194994 rno-miR-214-3p miRNA MIMAT0000885 Rnf181 mRNA 297337 Prediction 0.2202 Rnf181 RAID02245862 rno-miR-27b-3p miRNA MIMAT0000798 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID02406892 rno-miR-761 miRNA MIMAT0012853 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID02468829 rno-miR-301b-3p miRNA MIMAT0005304 Rnf181 mRNA 297337 Prediction 0.2202 Rnf181 RAID02501750 rno-miR-6323 miRNA MIMAT0025062 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID02612426 rno-miR-322-5p miRNA MIMAT0001619 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID03100416 rno-miR-186-5p miRNA MIMAT0000863 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID03261707 rno-miR-20b-5p miRNA MIMAT0003211 Rnf181 mRNA 297337 Prediction 0.2202 Rnf181 RAID03396991 rno-miR-150-5p miRNA MIMAT0000853 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID03632165 rno-miR-335 miRNA MIMAT0000575 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID03707962 rno-miR-291b miRNA MIMAT0017822 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID03799567 rno-miR-15b-5p miRNA MIMAT0000784 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID03915346 rno-miR-1193-3p miRNA MIMAT0017859 Rnf181 mRNA 297337 Prediction 0.1828 Rnf181 RAID04022901 rno-miR-301a-3p miRNA MIMAT0000552 Rnf181 mRNA 297337 Prediction 0.2202